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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 620 fasta sequence
[TGGACTGAGGAGTGAAAGCTTGTCGCAACTCGCAACCCAATCATCCAATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAAAACTGTTCCAAGCATTTCTT]
[+] EMBL CF329631 [TGGACTGAGGAGTGAAAGCTTGTCGCAACTCGCAACCCTAT ATCC ATTCCC CACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGANTTATTCGGTCaaaaaaa ]
[+] EMBL OSC26871 [ ctAATCATCCAATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAG CCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTNCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCG ACTTGAAACTGAATGAGTTAATTGTGTCTATTGTG ]
[+] EMBL C98146 [ AATCATCCAATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCAAAAAAAAaaaa ]
[+] EMBL OS0794A [ AATCATCCAATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAG CCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGNTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAA ]
[+] EMBL CF308306 [ ACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAA ATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAAAACTGTTC ]
[+] EMBL BE039635 [ GAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTT ]
[+] EMBL BE530978 [ CGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAAAACTGTTCCAAGCATTTCTT]
[-] EMBL CF308305 [ CGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAA ATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAAAACTGTTCCAAGCAaaaaa ]
[+] EMBL AU225749 [ gccGCTCCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCT AGCgg ]
consensusID : consensus_15935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 555 fasta sequence
[AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAA-AATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT-CCGTCGATCG-CCAT----GGCGGATGAAGAACCTGTTGAT-CCAAAGAAGTACCTTGAGGAG-CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT-ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT-GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT-CGCACTTGAAACTGAATGAGTTAAT-TGTGTCTATTGTGACTG-TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF281956 [AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAA AATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGC ]
[+] EMBL CF317097 [ gaGACCTGACTGGACTG AGGAGT GAAACAATT CCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGAT ]
[-] EMBL CF329630 [ TCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCAAAAAAAA ]
[+] EMBL CF318680 [ CACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAATAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCC ]
[+] EMBL AU058237 [ ACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCAT ]
[+] EMBL AK060396 [ ACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGAT ]
[+] EMBL CF316160 [ ACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTGTTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCA ]
[+] EMBL AU065588 [ ACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACNCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAA NCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCNAATGATGACCGGCTGNTACTTTTGGATCAGTGACTTGTTCTATTTGCGT ACCTTGGT CGCACTTG AACTGAATGAG TAATGTG GCCAATTGTGACTG GTTGGG ]
[+] EMBL AU089712 [ CGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATAAAAAAaaaa ]
[+] EMBL CF309213 [ CAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTT ]
[+] EMBL AU173058 [ TCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAGCCGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCA ]
[+] EMBL AU065592 [ GATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCATGTGGGGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAA CCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCCGCACTTG AACTGNATGAGTT ]
[+] EMBL AU029962 [ gaATCGCGAGGAGGAGGANACCCCGCCCGCCAGCCACCCCGGATCCCGTCNATCGCCCATGTGGGGCGGATGAAGAACCTGTTGATCCCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAAAAAA ]
[-] EMBL CF280163 [ CACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCAAAAAAAA ]
[+] EMBL AU029943 [ AGTNCCTTGAGGAG CGCTGCAAGCCCCAGTGCGTTAAGCCACTNTAATGGGTTTGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATNCT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCNCCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTANTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCNCCATTTCCCATATCAAAGNATGTGGNTTTATTCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BE228798 [ GAGGATA T GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCccca ]
consensusID : consensus_15935#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence
[AAAAACCTTGTTGATCCAAAAAAGTCCCTTGAGGAGCGTTGCAAGCCCCAGTGGGTAAACCCCTTTTATGAGTATAAAAAGTGCGTCAAAAAAGTGAAAAAGAATAATATTGGGCATAAACATTGCATTGGGCAATATTTCGATTATTGGTCAGGCATTGACAAATGTGTAGCCCCGAAACCCCTTAAAAAGCTCAAATAATGCCCGGCTGCTACTTTTGGATCAGTGACTTGTTTTATTTGGGTACCCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTGGGGTTTCATGACTTGTAATAAAACCCCCCTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF281957 [AAAAACCTTGTTGATCCAAAAAAGTCCCTTGAGGAGCGTTGCAAGCCCCAGTGGGTAAACCCCTTTTATGAGTATAAAAAGTGCGTCAAAAAAGTGAAAAAGAATAATATTGGGCATAAACATTGCATTGGGCAATATTTCGATTATTGGTCAGGCATTGACAAATGTGTAGCCCCGAAACCCCTTAAAAAGCTCAAATAATGCCCGGCTGCTACTTTTGGATCAGTGACTTGTTTTATTTGGGTACCCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTGGGGTTTCATGACTTGTAATAAAACCCCCCTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15935#1 ---------AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAATTCCCACACGGA 51
consensus_15935#2 ------------------------------------------------------------
consensus_15935#0 TGGACTGAGGAGTGAAAGCTTGTCGCAACTCGCAACCCAATCATCCAATTCCCACACGGA 60
consensus_15935#1 CTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGA 111
consensus_15935#2 ------------------------------------------------------------
consensus_15935#0 CTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGA 120
consensus_15935#1 GACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTG 171
consensus_15935#2 -----------------------------------------------AAAAACCTTGTTG 13
consensus_15935#0 GACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTG 180
** * * *****
consensus_15935#1 ATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGT 231
consensus_15935#2 ATCCAAAAAAGTCCCTTGAGGAGCGTTGCAAGCCCCAGTGGGTAAACCCCTTTTATGAGT 73
consensus_15935#0 ATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGT 240
******* **** ************ ************** ***** ** * *******
consensus_15935#1 ATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGC 291
consensus_15935#2 ATAAAAAGTGCGTCAAAAAAGTGAAAAAGAATAATATTGGGCATAAACATTGCATTGGGC 133
consensus_15935#0 ATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGC 300
** * *********** * **** * *** ** *** ************ **** *****
consensus_15935#1 AATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGC 351
consensus_15935#2 AATATTTCGATTATTGGTCAGGCATTGACAAATGTGTAGCCCCGAAACCCCTTAAAAAGC 193
consensus_15935#0 AATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGC 360
********** ********* ******************* ******* **** * ****
consensus_15935#1 TCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGT 411
consensus_15935#2 TCAAATAATGCCCGGCTGCTACTTTTGGATCAGTGACTTGTTTTATTTGGGTACCCTTGT 253
consensus_15935#0 TCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGT 420
****** *** ******************************* ****** *** ******
consensus_15935#1 TCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTT 471
consensus_15935#2 TCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTGGGGTTTCATGACTT 313
consensus_15935#0 TCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTT 480
********************************************* **************
consensus_15935#1 GTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCAAAAAAAAAA 531
consensus_15935#2 GTAATAAAACCCCCCTTTTCCCA---------------------------AAAAAAAAAA 346
consensus_15935#0 GTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGT 540
********* ** ** ******* * *
consensus_15935#1 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 555
consensus_15935#2 AAAAAAAAAAAAAAAAAA------------------------------------------ 364
consensus_15935#0 GGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAA 600
* * * *
consensus_15935#1 --------------------
consensus_15935#2 --------------------
consensus_15935#0 AACTGTTCCAAGCATTTCTT 620
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||