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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 844 fasta sequence
[CTTTTTTTTTAACAGTACTCCATCAATAGCAACATATATACTCCAGTCCATACTCCATAGCAACATACGGAAAGCTAAAGTTTTAGAGGTCCAGAGGACTAAGGAGAGAGCGAGACAAGTAAGAAACAATGAGACTTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC-AAGATTGCCATCC-AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA-ACAAA-CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT-CCTTATTTGTGAAGA-TCATTCA-TTTGAAGT-AAAACCCTGAGAGGCTACT-CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT-AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG-TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG-CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC-TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGACTGTGGA]
[+] EMBL CB621731 [CTTTTTTTTTAACAGTACTCCATCAATAGCAACATATATACTCCAGTCCATACTCCATAGCAACATACGGAAAGCTAAAGTTTTAGAGGTCCAGAGGACTAAGGAGAGAGCGAGACAAGTAAGAAACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCT ]
[-] EMBL CB621730 [ ACATATATACTCCAGTCCATACTCCATAGCAACATACGGAAAGCTAAAGTTTTAGAGGTCCAGAGGACTAAGGAGAGAGCGAGACAAGTAAGAAACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTGGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGGAGTCG ]
[-] EMBL AU092681 [ TTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCCGNCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTTCACCGGCGCGCTGCTTCGCCGACATNCCTGCGTGCGGCGCGGC ]
[+] EMBL CF277096 [ tTTTTTGAAACGTTGCAAATTATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTATTCATCCGAAAAGAAAAATTCTGTTAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGGGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGGTTTGGGGTCC ]
[+] EMBL CF331155 [ tTTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGA ]
[-] EMBL CF331156 [ TTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGA ]
[+] EMBL CB660094 [ ACGTTGCAAATCATAAGAGTAACATCATCGACCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGACTGTGGA]
[+] EMBL CB660056 [ CGTTGCAAATCATAAGAGTAACATCATCGATCCTTTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGCGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGACTGTGGA]
[-] EMBL CB660091 [ CGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGAGGGAGAGG ]
[-] EMBL CB660055 [ AATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTTGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGAGGGAGAGG ]
[-] EMBL CF281771 [ GACTCAAGACAACAAAGATTGCCATCCAAACTCAAACAGTGTTG TGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACANACAAANCATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGA ]
[-] EMBL AU070526 [ CTTTTTCTCCCTTATTTGTGAAGATTCATTCATTTTGAAGTAAAAACCCTGAGAGGCTACTCCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGT ]
[-] EMBL OSS3653A [ TTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGAACTCTTAAAATCTTGCTGCTCCTTACGACAGAAGTNAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCANCGACGAGGTNGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCNGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGG ]
[-] EMBL CF301074 [ T CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGG ]
[-] EMBL OSS1901A [ aAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAAGTAATACATGCAGCCGGAATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGNACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGT ]
[-] EMBL OSS3074A [ CCTTACGACAGAAGTCAAATTCGTTGNTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCAACGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGG ]
[-] EMBL C27788 [ CTTACCACANAAGTTAAATTCGTTGGTGT AGTAATACATGCAGCCGGAATAGCCGTCNATCTCCTTGGGNCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGNACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCANCGACGAGGTNGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCNGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCG ]
[-] EMBL OS0584A [ GTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGNCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCANCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGA GGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGAC ]
[-] EMBL AU066069 [ TCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGT ]
[-] EMBL OSS3159A [ TCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCAACGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCNGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGG ]
consensusID : consensus_16010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 703 fasta sequence
[TTTTTTTTTTTTAAG-AACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACT-TGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC-AGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG-TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGG]
[-] EMBL BE039977 [TTTTTTTTTTTTAAG AACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAANAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACT TGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC AGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGG]
[-] EMBL CA758890 [TTTTTTTTTTTTAAG AACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACT TGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC AGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGG]
[+] EMBL CF281772 [ TTTTTTGTAAGAAACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACGTCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGATAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACT TGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC AGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGGNTTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACA ]
[-] EMBL BI794861 [ tttttttttTGACTCAAGACAACAAGATTG CATCCAACTCAAACAGTGTTGTTGA TGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGGGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTGTGG TTGTCGGCTTTTTCTCCTTA TTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC AGATACGGGGCATGCACTCTCAAAATCTTGCTG TCCTTACGACAGAAGTCAAATTCG TGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTG ]
[-] EMBL C74072 [ nCATTT AAGT AAACCTTNAGA GCTACTCAAAATAC GGGCATGCACTCTAANAATCTTGCTGCTCCTTACGACAGAAGTCAAATNCGTTGGTGTAGTAATACATGNAG CGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTNAAG TCTTTCAACAGGTCGAAGACNCAGCGCTTGACNTGACGGACCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGNCGATGTGCTTCGACGCCGCCATCAGCATCGACGAGGTCGGGANCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGNCGCGGCGGGCCTCGAGGGCTTCTCGC ]
consensusID : consensus_16010#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[TTTTTTTTTTTTTTTTTTTTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAANCAGGATGAAAAGCTCANAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGNATAGGNGTCCATCTCCTTGGGGNACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGNTTGGACCTGGNGGCCC]
[-] EMBL AU029412 [TTTTTTTTTTTTTTTTTTTTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAANCAGGATGAAAAGCTCANAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGNATAGGNGTCCATCTCCTTGGGGNACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGNTTGGACCTGGNGGCCC]
consensusID : consensus_16010#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[TTTTTTTTTTTTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTCAAATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCC]
[+] EMBL CF298984 [TTTTTTTTTTTTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTCAAATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16010#0 CTTTTTTTTTAACAGTACTCCATCAATAGCAACATATATACTCCAGTCCATACTCCATAG 60
consensus_16010#3 ------------------------------------------------------------
consensus_16010#1 ------------------------------------------------------------
consensus_16010#2 ------------------------------------------------------------
consensus_16010#0 CAACATACGGAAAGCTAAAGTTTTAGAGGTCCAGAGGACTAAGGAGAGAGCGAGACAAGT 120
consensus_16010#3 ------------------------------------------------------------
consensus_16010#1 -------------------------------------------------TTTTTTTTTTT 11
consensus_16010#2 ------------------------------------------------------------
consensus_16010#0 AAGAAACAATGAGACTTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACT 180
consensus_16010#3 ---------------TTTTTTTTTTTTTGCAAATCATAAGAGTAACATCATCGATCAACT 45
consensus_16010#1 TAAGAACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACT 71
consensus_16010#2 ------------------------------------------------------------
consensus_16010#0 TATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTG 240
consensus_16010#3 TATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTG 105
consensus_16010#1 TATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTG 131
consensus_16010#2 -----------------TTTTTTTTTTTTTTTTTTTTGCCATCCAACTCAAACAGTGTTG 43
* * *************************
consensus_16010#0 TTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGC 300
consensus_16010#3 TTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGC 165
consensus_16010#1 TTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGC 191
consensus_16010#2 TTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAANCAGGATGAAAAGCTCANAGGC 103
************************************** ****** ********* ****
consensus_16010#0 GTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGA 360
consensus_16010#3 GTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGA 225
consensus_16010#1 GTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGA 251
consensus_16010#2 GTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGA 163
************************************************************
consensus_16010#0 ACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCT 420
consensus_16010#3 ACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCT 285
consensus_16010#1 ACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCT 311
consensus_16010#2 ACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCT 223
************************************************************
consensus_16010#0 GAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAA 480
consensus_16010#3 GAGAGGCTACTCAAATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAA 345
consensus_16010#1 GAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAA 371
consensus_16010#2 GAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAA 283
************* **********************************************
consensus_16010#0 GTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCA 540
consensus_16010#3 GTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCC-------- 397
consensus_16010#1 GTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCA 431
consensus_16010#2 GTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGNATAGGNGTCCATCTCCTTGGGGNA 343
*********************************** ***** **********
consensus_16010#0 CTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTC 600
consensus_16010#3 ------------------------------------------------------------
consensus_16010#1 CTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTC 491
consensus_16010#2 CTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGNTTGGACCTGGNGGCCC---- 399
consensus_16010#0 GAGGCACTTCTGCGGGTTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGG 660
consensus_16010#3 ------------------------------------------------------------
consensus_16010#1 GAGGCACTTCTGCGGGTTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGG 551
consensus_16010#2 ------------------------------------------------------------
consensus_16010#0 CCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGG 720
consensus_16010#3 ------------------------------------------------------------
consensus_16010#1 CCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGG 611
consensus_16010#2 ------------------------------------------------------------
consensus_16010#0 ATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGG 780
consensus_16010#3 ------------------------------------------------------------
consensus_16010#1 ATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGG 671
consensus_16010#2 ------------------------------------------------------------
consensus_16010#0 CCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGACTG 840
consensus_16010#3 ------------------------------------------------------------
consensus_16010#1 CCTCGAGGGCTTCTCGCCTTGGAGATCTGAGG---------------------------- 703
consensus_16010#2 ------------------------------------------------------------
consensus_16010#0 TGGA 844
consensus_16010#3 ----
consensus_16010#1 ----
consensus_16010#2 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||