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Oryza sativa
cluster # 1602 cluster # 1602       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1602#0 length = 1450 sequences # 2  

consensusID : consensus_1602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1450
fasta sequence
                              [TCGCCGCCACGGCGAACCCCTCGCCGCCGCCACCGCCACCGCCGATCGGGCGGGAGGAGGCGTCGCCCGATCCGATGTCGGCCGCGGAGGATCCCGCGAAGCCCCCGCCCCCACCCCCGCCGCAGCTCGAGGCGTCCGGATCGGACCCCGACGACCCCCTCCTCCGCGACCGCGTCGTCGTCATCGCCCCTCCCCCTCCCCCGCCACCACCACCACCACCAGCACCCGCCCCCGCCCTCCTCGCCCCCGCCGAGAACGCCTCCGCGGAAGCCGCCTTCGCCGTGCCGCCGGCGGCGATCGCGGCGGTGGTGGAGGCGAACGGCAACTCGGAGAAGAAGAAGAAGAGGAAGACGGATGAAGGGGAAGGGTGCAAGTCGTGCAGCTGCAAGAAATCCAAGTGCCTTAAGCTTTATTGTGTGTGTTTTGCATCTGGATCACATTGTTCTGAATCATGTGGATGTGATCCATGTTACAACAAATCTATTCATGGTGTTCCACGGAGTACACCAGCCTTGCCTTTGAAAGCTGTTCAAACATTAGAGACTGGTCAAGATTCAGTGGAACAACTTATAAGATCCCCTATGGACTTTGGTAGAAGAAAATGCACTTGCAAAAAGTCAGGCTGCCTTAAGAAATACTGTGACTGCTACCAGGGAGGAGCAGGATGCTCCATCAACTGTAAATGTGATGATTGCAAGAACCCATATGGGAGAAAAGTTGGTGTTATTTTGGATGGTAAAAATATTCTTGCTGGACCAACACCAAATGAAAGGAATGGAACAGAAGCTGACTCAAGTGACGATGAAGAAGATGATTATTATATGAACCGACCACTCTCGCCTGTCTCCCCATCTCCAGTATCCAGAGAGTCTTCATTCCAACAGGAGACTTTAGTTGGCGTCGAAGTCCAGACTATGAATGGGCATCTATACCCAAAACCGCTTACCCAAGTGCGGCCGGAATCATGGCAGCTCACTAGGAGGCCTACTGAGGAAGTGCGAGGAGAGGCATGGCACTACTTGAGGAGGCCCAGTGAGGATGGAACATCCGATGTTACGGAAGGACATGCTGACCCCAAGTTTCAGAGAGACAATAAACAGCTGGAAAACCAT-GTTGATAGGTACAGCATTCCGCGGTGCATCGAGGTGATG-AACG-CCATGGCAGA-CCTCTCGCCG-ATCGAGAAGTCGCT--CGCACCGGACG-TCTTCT-TGGATCCAAG-CAA-TC-GGGAGATTTTTCTTT-CAC-TGA-CTGTAGATATTCGAACCATGTGGCTGAAGCGTAAGATGAAGAGCCTTGTGTAGAGATACCATGAAAATTTTTCATCCGCATAAAACCTGTCAAGCATGTGGTGTACTGTAGATATATCTAGTTTTCAAGAGTTCTGAACCGATGTATCTAGTCCTAACTTGGCACAGGCTATATTGCAGCCAGCAACAATAAATTCATATGATCTTCA]

[+] EMBL AK108664             [TCGCCGCCACGGCGAACCCCTCGCCGCCGCCACCGCCACCGCCGATCGGGCGGGAGGAGGCGTCGCCCGATCCGATGTCGGCCGCGGAGGATCCCGCGAAGCCCCCGCCCCCACCCCCGCCGCAGCTCGAGGCGTCCGGATCGGACCCCGACGACCCCCTCCTCCGCGACCGCGTCGTCGTCATCGCCCCTCCCCCTCCCCCGCCACCACCACCACCACCAGCACCCGCCCCCGCCCTCCTCGCCCCCGCCGAGAACGCCTCCGCGGAAGCCGCCTTCGCCGTGCCGCCGGCGGCGATCGCGGCGGTGGTGGAGGCGAACGGCAACTCGGAGAAGAAGAAGAAGAGGAAGACGGATGAAGGGGAAGGGTGCAAGTCGTGCAGCTGCAAGAAATCCAAGTGCCTTAAGCTTTATTGTGTGTGTTTTGCATCTGGATCACATTGTTCTGAATCATGTGGATGTGATCCATGTTACAACAAATCTATTCATGGTGTTCCACGGAGTACACCAGCCTTGCCTTTGAAAGCTGTTCAAACATTAGAGACTGGTCAAGATTCAGTGGAACAACTTATAAGATCCCCTATGGACTTTGGTAGAAGAAAATGCACTTGCAAAAAGTCAGGCTGCCTTAAGAAATACTGTGACTGCTACCAGGGAGGAGCAGGATGCTCCATCAACTGTAAATGTGATGATTGCAAGAACCCATATGGGAGAAAAGTTGGTGTTATTTTGGATGGTAAAAATATTCTTGCTGGACCAACACCAAATGAAAGGAATGGAACAGAAGCTGACTCAAGTGACGATGAAGAAGATGATTATTATATGAACCGACCACTCTCGCCTGTCTCCCCATCTCCAGTATCCAGAGAGTCTTCATTCCAACAGGAGACTTTAGTTGGCGTCGAAGTCCAGACTATGAATGGGCATCTATACCCAAAACCGCTTACCCAAGTGCGGCCGGAATCATGGCAGCTCACTAGGAGGCCTACTGAGGAAGTGCGAGGAGAGGCATGGCACTACTTGAGGAGGCCCAGTGAGGATGGAACATCCGATGTTACGGAAGGACATGCTGACCCCAAGTTTCAGAGAGACAATAAACAGCTGGAAAACCAT GTTGATAGGTACAGCATTCCGCGGTGCATCGAGGTGATG AACG CCATGGCAGA CCTCTCGCCG ATCGAGAAGTCGCT  CGCACCGGACG TCTTCT TGGATCCAAG CAA TC GGGAGATTTTTCTTT CAC TGA CTGTAGATATTCGAACCATGTGGCTGAAGCGTAAGATGAAGAGCCTTGTGTAGAGATACCATGAAAATTTTTCATCCGCATAAAACCTGTCAAGCATGTGGTGTACTGTAGATATATCTAGTTTTCAAGAGTTCTGAACCGATGTATCTAGTCCTAACTTGGCACAGGCTATATTGCAGCCAGCAACAATAAATTCATATGATCTTCA]
[+] EMBL CA753450             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAGCTGACTCAAGTGACGATGAAGAAGATGATTATTATATGAACCGACCACTCTCGCCTGTCTCCCCATCTCCAGTATCCAGAGAGTCTTCATTCCAACAGGAGACTTTAGTTGGCGTCGAAGTCCAGACTATGAATGGGCATCTATACCCAAAACCGCTTACCCAAGTGCGGCCGGAATCATGGCAGCTCACTAGGAGGCCTACTGAGGAAGTGCGAGGAGAGGCATGGCACTACTGGAGGAGGCCCAGTGAGGATGGAACATCCGATGTTATGGAAGGACATGCTGACCCCCAGTTTCAGAAAGACAATAAACAGCTGGAAAACCCTGGTTGATAGGTACAGCATTCCGCGGTGCCTCCAGGTGATGAAACGCCCTTGGCAGACCCTCTCNCCGAATCGAAAATTCCCTCCCCCCCCGGACGTTTTTCTGGGGATCCCAGCCAATTCGGGGAGATTTTTCTTTCCACTTGACCTGTAAATAatgcca                                                                                                                                                                                                 ]


>consensus_1602#0 TCGCCGCCACGGCGAACCCCTCGCCGCCGCCACCGCCACCGCCGATCGGGCGGGAGGAGG CGTCGCCCGATCCGATGTCGGCCGCGGAGGATCCCGCGAAGCCCCCGCCCCCACCCCCGC CGCAGCTCGAGGCGTCCGGATCGGACCCCGACGACCCCCTCCTCCGCGACCGCGTCGTCG TCATCGCCCCTCCCCCTCCCCCGCCACCACCACCACCACCAGCACCCGCCCCCGCCCTCC TCGCCCCCGCCGAGAACGCCTCCGCGGAAGCCGCCTTCGCCGTGCCGCCGGCGGCGATCG CGGCGGTGGTGGAGGCGAACGGCAACTCGGAGAAGAAGAAGAAGAGGAAGACGGATGAAG GGGAAGGGTGCAAGTCGTGCAGCTGCAAGAAATCCAAGTGCCTTAAGCTTTATTGTGTGT GTTTTGCATCTGGATCACATTGTTCTGAATCATGTGGATGTGATCCATGTTACAACAAAT CTATTCATGGTGTTCCACGGAGTACACCAGCCTTGCCTTTGAAAGCTGTTCAAACATTAG AGACTGGTCAAGATTCAGTGGAACAACTTATAAGATCCCCTATGGACTTTGGTAGAAGAA AATGCACTTGCAAAAAGTCAGGCTGCCTTAAGAAATACTGTGACTGCTACCAGGGAGGAG CAGGATGCTCCATCAACTGTAAATGTGATGATTGCAAGAACCCATATGGGAGAAAAGTTG GTGTTATTTTGGATGGTAAAAATATTCTTGCTGGACCAACACCAAATGAAAGGAATGGAA CAGAAGCTGACTCAAGTGACGATGAAGAAGATGATTATTATATGAACCGACCACTCTCGC CTGTCTCCCCATCTCCAGTATCCAGAGAGTCTTCATTCCAACAGGAGACTTTAGTTGGCG TCGAAGTCCAGACTATGAATGGGCATCTATACCCAAAACCGCTTACCCAAGTGCGGCCGG AATCATGGCAGCTCACTAGGAGGCCTACTGAGGAAGTGCGAGGAGAGGCATGGCACTACT TGAGGAGGCCCAGTGAGGATGGAACATCCGATGTTACGGAAGGACATGCTGACCCCAAGT TTCAGAGAGACAATAAACAGCTGGAAAACCATGTTGATAGGTACAGCATTCCGCGGTGCA TCGAGGTGATGAACGCCATGGCAGACCTCTCGCCGATCGAGAAGTCGCTCGCACCGGACG TCTTCTTGGATCCAAGCAATCGGGAGATTTTTCTTTCACTGACTGTAGATATTCGAACCA TGTGGCTGAAGCGTAAGATGAAGAGCCTTGTGTAGAGATACCATGAAAATTTTTCATCCG CATAAAACCTGTCAAGCATGTGGTGTACTGTAGATATATCTAGTTTTCAAGAGTTCTGAA CCGATGTATCTAGTCCTAACTTGGCACAGGCTATATTGCAGCCAGCAACAATAAATTCAT ATGATCTTCA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)