|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 1070 fasta sequence
[GTCGCCTCGCCGTGGCCTCTTCCTCTTCCTCTTCCTCCGCGTATAAATAGATTCCCCTCTTGGGGCCTTGCCTTTCGCTGTCAGCCTCAGCCAAACTCTTCTCTTCTCTTCTGCCTACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA-GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT-CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA-GGATCAT-CAA-CG-AGA-TCG--CCACCCTG-CTGGAG-CAA-CCCG-TCG-TCAAC-TTCG-ATAA--GGTCG-ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT-GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT-CCGTCAGTT-CTGTCAGGACAAAAGC-AGA-GATGGGTGCCTTATGG-CATTGGCTGTTGTGAGAAACGACTTCT-ATGATCTGCGCAACAAGT-TTCAGACTATGC-TTCAG-C-TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC-AGCAATAATTGAAGCAAAAGAGT-GTAGCTG-CA-T-GTGA-TCT-CA-CA-TGATAAA-TGTATCTTTGAAGATGTAGA-CCA-TGTT-CAATGGGCTTCT-GGCTT-AGAGTGTGTGCG-CGT-GT-GCAGAAT-CAAAT-CATTTGGTTTGAGGCTTCAT-GCTTCCAACTTTGAGCT-CAT-AACCC-TTTAATT-GTTAGTGACAACTGAT-CGTCTAGT-GT-CGAT-GTACCTGT-TACCT-GTCT-GTGTTCGGTT-GTCT-GCCA-CCTT-T-GCAAACT-CTTACTGGTT-GT-CTGGTGACTTGTTT-AGCTGGCTT-GTGACT-TT-AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCAACATGAACAAGCATCCGTATTCAGTTTTGAGAATTTCATGTTGTTGTGC]
[+] EMBL CF314061 [GTCGCCTCGCCGTGGCCTCTTCCTCTTCCTCTTCCTCCGCGTATAAATAGATTCCCCTCTTGGGGCCTTGCCTTTCGCTGTCAGCCTCAGCCAAACTCTTCTCTTCTCTTCTGCCTACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC CTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT AT ]
[+] EMBL CF277915 [ gagtagaaaGCTGTCAGCCTCAGCCAAACTCTTCTCTTCTCTTCTGCCTACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGT ]
[+] EMBL AK072521 [ CCTCAGCCAAACTCTTCTCTTCTCTTCTGCCTACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCAACATGAACAAGCATCCGTATTCAGTTTTGAGAATTTCATGTTGTTGTGC]
[+] EMBL CF313424 [ CAGCCAAACTCTTCTCTTCTCTTCTGCCTACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCA ]
[+] EMBL CF314597 [ CAGCCAAACTCTTCTCTTCTCTTCTGCCTACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCAGGGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCG CTNCCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGTGGTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTTCCCGTCAGTTNCTGTCAGGACAAAAGC AGANGATGGGTGCCTTATGGNCATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGTGGTAGCTG CA T GTGA TCT CA CA TGATAA ]
[+] EMBL AA752337 [ tTTCTCTTCTGCCTACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAACTCACCGATCTCCTCTCCTCCATGTTCTCCCA GGGTTTTGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCg ]
[+] EMBL AU174822 [ TCTTCTGCCTACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AG ]
[+] EMBL CA753124 [ CACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACAGGGATCATCCAACCGAAGATTCGGCCCACCCTGCCTGGAGCCAACCCCGTTCGTTCAACTTTCGAATAAAGGGTCGAACGCC ACGTTC TCAGCTCAAAGGCAGCAG ]
[+] EMBL CF280006 [ CCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA TGGTGA TCT CA CA TGATAA ]
[+] EMBL CA998895 [ GCCGCCGATTCAGATTCCGATTGCGCTCGCCCATGGCTGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CC AGA TCG CCACCCTG C ]
[+] EMBL AK104879 [ TGCGCTCGCCCATGGCGGCCGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GCACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCAACATGAACAAGCATCCGTATT ]
[+] EMBL AA749761 [ TGCGCTCG CCATGGCCG CGCCGCTCTCCGCGACCAG TCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATcagga ]
[+] EMBL AY345241 [ GCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAA ]
[+] EMBL OS1321943 [ CA GGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCA CCCGGGCTTCGTCT CCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT TTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGCAAGA GATGGGTGCCTTATGG CATTGGCTGTTGTNAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGCTTTCAA CTTGGAGCAGCAAATCCAGGCTTATGATNCCAAGC AGCAATAATTGAAGCAAAAGAGT TTAGCTN CA T GTGATTCT CA CA TGNTAA ]
[+] EMBL AU085713 [ GCCGACA GGATCAT CAA CG AGA TCG CCACCCTG CTGGAG CAA CCCG TCG TCAAC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCAAaaa ]
[+] EMBL OSS15827A [ AC TTCG ATAA GGTCG ACGCCTACGTTCATCAGCTCAAAGGCAGCAGCGCCAGT TTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTTCG CGT GT TCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGGGACAACTGAT CGGCTAGT GT CGNT GTACCTGT TANCT GTCT GTGTNCGGTT G CT TNCA C ]
[-] EMBL CF313423 [ TCAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCAAaaaa ]
[-] EMBL CF314598 [ CAAAGGCAGCAGCGCCAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCAACATGAACAAGCATCCGTATTCAaaaaa ]
[+] EMBL AU223462 [ CAGT GTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTT CCGTCAGTT CTGTCAGGACAAAAGC AGA GATGGGTGCCTTATGG CATTGGCTGTTGTGAGAAACGACTTCT ATGATNTGCGCAACAAGT TTCAGACTATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAAaaa ]
[+] EMBL BI798130 [ GAAACGACTTCT ATGATCTGCGCAACAAGT TTCAGACTATGC TTCAGTC TGGACCACCAAATCCAGGCTTATGATCCCAAGCTACCAATAATTGAACCCAAAGAGT GTAGCTGCCACT GTGA TCT CACCACTGATAAAGTGTATCTTTGAAGATGTAGACCCACTGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCGCCGT GT CCAGAAT CAAAT CATTTGGTTTGAGGCTTCATGGCTTCCAACTTTGAGCTGCATGAACCC TTTAATTGGTTAGTGACAACTGATGCGTCTAGTGGTCCGATGGTACCTGT TACCTCGTCTGGTGTTCGGTTGGTCTGGCCA CCTTGTGGCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTATGTGAAATTGCACCATAATTTCTGACTTAAaaaaaaaa ]
[+] EMBL BI797165 [ CTTCTGATGATCTGCGCACAAAGTGTTCAGACTATGC TTCAG C TGGAGCAGC AATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGC AAAGAGTGGTGACTG CA T GTGA TCTGCA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTTGCAATGGGCTTCTGGGCTTGAGAGTGTGTGCG CGTGGTGGCAGAATGCAAATGCATTTGGTTTGAGGCTTCAT GCTTCCGACTTTGAGCT CATGAACCCGTTGAATT GTTAGTGAC ACTGAT CGTCTAGT GTGCGAT GTACCTGTGTACCT GTCT GTGTTCGGTT GTCT GCCACCCTT T GCAAACTGCTTACTGGTTGGT CTGGTGACTTGTTTGAGCTGGCTTGGTGACTGTTGAGGAAGGGAAAGTATGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAAC ACGATCACCCTGTTTAATATCAAaaa ]
[-] EMBL CF314062 [ ATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GTAATGGTGACTTG TT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCAACATGAACAAaaaa ]
[-] EMBL CF280007 [ ATGC TTCAG C TGGAGCAGCAAATCCAGGCTTATGATCCCAAGC AGCAATAATTGAAGCAAAAGAGT GTAGCTG CA T GTGA TCT CA CA TGATAAA TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCGACATGAACAAGCAT ]
[-] EMBL CF297612 [ A TGTATCTTTGAAGATGTAGA CCA TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGAG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAGTTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAATATCAACATGAACAAGCATCCGTATTCAGTTTTGAGAAaaaa ]
[+] EMBL AU162071 [ TGTT CAATGGGCTTCT GGCTT AGAGTGTGTGCG CGT GT GCAGAAT CAAAT CATTTGGTTTGAGGCTTCAT GCTTCCAACTTTGAGCT CAT AACCC TTTAATT GTTAGTGACAACTGAT CGTCTAGT GT CGAT GTACCTGT TACCT GTCT GTGTTCGGTT GTCT GCCA CCTT T GCAAACT CTTACTGGTT GT CTGGTGACTTGTTT AGCTGGCTT GTGACT TT AGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAanaa ]
consensusID : consensus_16030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[TCATCAGCTCAAAGGCAGCAGCGCCAGTGTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTTCCGTCAGTTCTGTCAGGACAAAAGCAGAGATGGGTGCCTTATGGCATTGGCTGTTGTGAGAAACGACTTTTATGATCCGCGCAACAAGTTTCAGACTATGCTTCAGCTGGAGCAGCAAATCCAGGCTTATGATCCCAAGCAGCAATAATTGAAGCAAAAGAGTGTAGCTGCATGTGATTTCACATGATAAATGTATCTTTGAAGATGTAGACCATGTTCAATGGGCTTTTGGCTTAAAGTGTGTGCGCGTGTGCAGAATCAAATCATTTGGTTTGAGGCTTCATGCTTCCAACTTTGAGCTCATAACCCTTTAATTGTTAGTGACAACTGATCGTTTAGTGTCGATGTACCTGTTACCTGTCTGTGTTCGGTTGTTTGCCACCTTTGCAAACTTTTAATGGTTGTTTGGTGACTTGTTTAGCTGGCTTGTGACTTTAGGAAGGGAAAGTGTGTGAAATTGCCCCATAATTTTTGACTTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF277914 [TCATCAGCTCAAAGGCAGCAGCGCCAGTGTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTTCCGTCAGTTCTGTCAGGACAAAAGCAGAGATGGGTGCCTTATGGCATTGGCTGTTGTGAGAAACGACTTTTATGATCCGCGCAACAAGTTTCAGACTATGCTTCAGCTGGAGCAGCAAATCCAGGCTTATGATCCCAAGCAGCAATAATTGAAGCAAAAGAGTGTAGCTGCATGTGATTTCACATGATAAATGTATCTTTGAAGATGTAGACCATGTTCAATGGGCTTTTGGCTTAAAGTGTGTGCGCGTGTGCAGAATCAAATCATTTGGTTTGAGGCTTCATGCTTCCAACTTTGAGCTCATAACCCTTTAATTGTTAGTGACAACTGATCGTTTAGTGTCGATGTACCTGTTACCTGTCTGTGTTCGGTTGTTTGCCACCTTTGCAAACTTTTAATGGTTGTTTGGTGACTTGTTTAGCTGGCTTGTGACTTTAGGAAGGGAAAGTGTGTGAAATTGCCCCATAATTTTTGACTTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_16030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[TACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCNATTCCNATTGCNCTCGCCCATGGGGCCGCGCTCTCCGCGACCAGCTCACCGNTCTCCTCTCCTCCATGTTCTCCCAGGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCGGNGCTTCGTCTTCNAGGTCGTNACCCTCTTCTGCNNCGACGCCGACAGGNTCATNAACGAGATCGTCACCCTNCTGGAGCAACCCGTCGTCAACTTTNGATAAGGTCGACGGCTACG]
[+] EMBL C27270 [TACTTCCCACGCCACCCCCACCCTCGCCGCCGATTCCNATTCCNATTGCNCTCGCCCATGGGGCCGCGCTCTCCGCGACCAGCTCACCGNTCTCCTCTCCTCCATGTTCTCCCAGGGTTTGGTGGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCGGNGCTTCGTCTTCNAGGTCGTNACCCTCTTCTGCNNCGACGCCGACAGGNTCATNAACGAGATCGTCACCCTNCTGGAGCAACCCGTCGTCAACTTTNGATAAGGTCGACGGCTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16030#0 GTCGCCTCGCCGTGGCCTCTTCCTCTTCCTCTTCCTCCGCGTATAAATAGATTCCCCTCT 60
consensus_16030#1 ------------------------------------------------------------
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 TGGGGCCTTGCCTTTCGCTGTCAGCCTCAGCCAAACTCTTCTCTTCTCTTCTGCCTACTT 120
consensus_16030#1 ------------------------------------------------------------
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 CCCACGCCACCCCCACCCTCGCCGCCGATTCCGATTCCGATTGCGCTCGCCCATGGCGGC 180
consensus_16030#1 ------------------------------------------------------------
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 CGCCGCTCTCCGCGACCAGCTCACCGCTCTCCTCTCCTCCATGTTCTCCCAGGGTTTGGT 240
consensus_16030#1 ------------------------------------------------------------
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 GGACGAGCAGTTCCAGCAGCTGCAGATGCTGCAGGACGAGGGGGGCACCCCGGGCTTCGT 300
consensus_16030#1 ------------------------------------------------------------
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 CTCCGAGGTCGTCACCCTCTTCTGCGACGACGCCGACAGGATCATCAACGAGATCGCCAC 360
consensus_16030#1 ------------------------------------------------------------
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 CCTGCTGGAGCAACCCGTCGTCAACTTCGATAAGGTCGACGCCTACGTTCATCAGCTCAA 420
consensus_16030#1 ------------------------------------------------TCATCAGCTCAA 12
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 AGGCAGCAGCGCCAGTGTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTTCCGTCA 480
consensus_16030#1 AGGCAGCAGCGCCAGTGTTGGTGCTCAGAAAGTGAAGTTCACTTGCATGCAGTTCCGTCA 72
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 GTTCTGTCAGGACAAAAGCAGAGATGGGTGCCTTATGGCATTGGCTGTTGTGAGAAACGA 540
consensus_16030#1 GTTCTGTCAGGACAAAAGCAGAGATGGGTGCCTTATGGCATTGGCTGTTGTGAGAAACGA 132
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 CTTCTATGATCTGCGCAACAAGTTTCAGACTATGCTTCAGCTGGAGCAGCAAATCCAGGC 600
consensus_16030#1 CTTTTATGATCCGCGCAACAAGTTTCAGACTATGCTTCAGCTGGAGCAGCAAATCCAGGC 192
consensus_16030#2 --------------------------------TACTTCCCACGCCACCCCCA-CCCTCGC 27
* **** * * * * ** **
consensus_16030#0 TTATGATCCCAAGCAGCAATAATTGAAGCAAAAGAGTGTAGCTGCATGTGATCTCACATG 660
consensus_16030#1 TTATGATCCCAAGCAGCAATAATTGAAGCAAAAGAGTGTAGCTGCATGTGATTTCACATG 252
consensus_16030#2 CGCCGATTCCNATTCCNATTGCNCTCGCCCATGGGGCCGCGCTCTCCGCGA--CCAGCTC 85
*** ** * * * * * * * *** * ** ** *
consensus_16030#0 ATAAATGTATCTTTGAAGATGTAGACC--ATGTTCAATGGGCTTCTGGCTTAGAGTGTGT 718
consensus_16030#1 ATAAATGTATCTTTGAAGATGTAGACC--ATGTTCAATGGGCTTTTGGCTTAAAGTGTGT 310
consensus_16030#2 ACCGNTCTCCTCTCCTCCATGTTCTCCCAGGGTTTGGTGGACGAGCAGTTCC-AGCAGCT 144
* * * * **** ** *** *** * * * ** *
consensus_16030#0 GCGCGTG-TGCAGAATCAAATCATTTGGTTTGAGGCTTCATGCTTCCAACTTTGAGCTCA 777
consensus_16030#1 GCGCGTG-TGCAGAATCAAATCATTTGGTTTGAGGCTTCATGCTTCCAACTTTGAGCTCA 369
consensus_16030#2 GCAGATGCTGCAGGACGAGG-----------GGGGCACCGGNGCTTCGTCTTCNAGGTCG 193
** ** ***** * * * *** * * * *** ** **
consensus_16030#0 TAACCCTTTAATTGTTAGTGACAACTGATCGTCTAGTGTCGATGTACCTGTTACCTGTCT 837
consensus_16030#1 TAACCCTTTAATTGTTAGTGACAACTGATCGTTTAGTGTCGATGTACCTGTTACCTGTCT 429
consensus_16030#2 TNACCCTCT--TCTGCNNCGACG-CCGACAGGNT--CATNAACGAGATCGTCACCCTNCT 248
* ***** * * *** * ** * * * * * ** *** **
consensus_16030#0 GTGTTCGGTTGTCTGCCACCTTTGCAAACTCTTACTGGTTGTCTGGTGACTTGTTTAGCT 897
consensus_16030#1 GTGTTCGGTTGTTTGCCACCTTTGCAAACTTTTAATGGTTGTTTGGTGACTTGTTTAGCT 489
consensus_16030#2 G-GAGCAACCCGTCGTCAACTTTNGATAAGGTCGACGGCTACG----------------- 290
* * * * ** **** * * * ** *
consensus_16030#0 GGCTTGTGACTTTAGGAAGGGAAAGTGTGTGAAATTGCACCATAATTTCTGACTTAAGAG 957
consensus_16030#1 GGCTTGTGACTTTAGGAAGGGAAAGTGTGTGAAATTGCCCCATAATTTTTGACTTAAAAA 549
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 TTGTGAAGTCTTGATGCTGGGTGGTATACAAGTCTATAAACAACGATCACCCTGTTTAAT 1017
consensus_16030#1 AAAAAAAAAAAAAA---------------------------------------------- 563
consensus_16030#2 ------------------------------------------------------------
consensus_16030#0 ATCAACATGAACAAGCATCCGTATTCAGTTTTGAGAATTTCATGTTGTTGTGC 1070
consensus_16030#1 -----------------------------------------------------
consensus_16030#2 -----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||