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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 887 fasta sequence
[CCAGGCGTCCGATGGCTTCGGAGAAGGAGGCGGCGCTCGCCCCGTGCCCAACGACTAACCCCCTACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCA-CTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCC-AAGTGAAGGATGGATTAACTGGCCTATCAAAGG-CAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAG-CAGGAGGGACTTGAAGATGGCTA-CCGTATTGTCATCAATGATGG-CCCCAGTGGATGCCAATCTGTTTA-CCACATACATGTACATCTCCTCGGAGG-CAGG-CAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGA--C-AGACACA-TTGCGTTCTCACTA--AAAAAA--AAAATTTTTTCCAAAAAAAAAAAAAANANAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAACTCAAGGGGGGCCGTCCATTTGCCTTAGGAGCGTAACCCCCTATGGCCGGTTTAAAGTGGATTGAAAACCTGGTTCCATTAATACTTGGCAATCCTTTTCAATGGGTAACAAAAGCCACCAACTTTCAAATGCCCCTATGGAGGAACCCTTTTGGCTAACCCCCTGGGGACCCTGGAGAATTACCCTACCCCTTCTTTCTTTTTTTTTCGTCCTCACAAAAGGCTTGGGG]
[+] EMBL BI798359 [CCAGGCGTCCGATGGCTTCGGAGAAGGAGGCGGCGCTCGCCCCGTGCCCAACGACTAACCCCCTACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCA CTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCC AAGTGAAGGATGGATTAACTGGCCTATCAAAGGCCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCCAGGAGGGACTTGAAGATGGCTACCCGTATTGTCATCAATGATGGCCCCCAGTGGATGCCAATCTGTTTA CCACATACATGTACATCTCCTCGGAGGCCAGGCCAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGA CAAGACACA TTGCGTTCTAA A AAAAAA A ]
[+] EMBL BI804937 [ ATCAAGAAGGAAATACCTTCCACCTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCC AAGTGAAGGATGGATTAACTGGCCTATCAAAGG CAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCCAAGTTGTTGCCAAG CAGGAGGGACTTGAAGATGGCTA CCGTATTGTCATCAATGATGG CCCCAGTGGATGCCCATCTGTTTA CCACATACATGTACATCTCCTCGGAGG CAGG CAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACCATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGA C AGACACC TTGCGTTCTCACTAGTAAAAAA AAAA ]
[+] EMBL AW154977 [ cGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGG CAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAG CAGGAGGGACTTGAAGATGGCTA CCGTATTGTCATCAATGATGG CCCCAGTGGATGCCAATCTGTTTA CCACATACATGTACATCTCCTCGGAGG CAGG CAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGTCTCTTCGTTGAATAATTCCTGTGACTGGCATAACAATTGGTGCCCTGAACTTATGCCATATGTGTGGGGA GTTACCACGACAGGACATGAGCATACTGCGATGA ATATGGA C CGATACA CTGCGGT TCACTT ATAATACCGGCTTTTTTTCCAAAAAAAAAAAAAANANAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAACTCAAGGGGGGCCGTCCATTTGCCTTAGGAGCGTAACCCCCTATGGCCGGTTTAAAGTGGATTGAAAACCTGGTTCCATTAATACTTGGCAATCCTTTTCAATGGGTAACAAAAGCCACCAACTTTCAAATGCCCCTATGGAGGAACCCTTTTGGCTAACCCCCTGGGGACCCTGGAGAATTACCCTACCCCTTCTTTCTTTTTTTTTCGTCCTCACAAAAGGCTTGGGG]
[+] EMBL BI795338 [ AAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAG CAGGAGGGACTTGAAGATGGCTA CCGTATTGTCATCAATGATGG CCCCAGTGGATGCCAATCTGTTTA CCACATACATGTACATCTCCTCGGAGG CAGG CAGATGAACT GCCGCCGGGCTAACGAGTGCCCCTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAAC ATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGACCC AGACACATTTGCGTTCTCACTA AAAAA ]
[+] EMBL C22422 [ GTTACCNCCTCTATGTTGCCAAAGTTNTTNCAAAG CAGGAGGGACTTGAAGATGGCTA CCTTA TGTCATCAATGATGG CCCCAGTGGATGCCAATCTGTTTACCCACATACATGTACATCTCCTCGGAGG CAGG CAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGA CAAGATACA TTGNGTTNTCA A AAAAAA AAAA AAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL D42223 [ TTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTA ]
consensusID : consensus_16040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 769 fasta sequence
[TTTTATCCACATAAGAACACTCGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC--GCCGT-G-CCCAAC-GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA-TGTTG-CCAAAGTTGTTGCAAAGCAGGAGGGAC-TTGAAGATGGCTACCGTA-TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG-TTTACCACATACATGTACATCTCCTCGGA-GGCAGG--CAGATG-AACT-GGCCGCCGGGCTAA-CGAGTG-CCCGT-C-TGTTGAACTGCCTTCAT-GGCAA-GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT-GGCATAACAATTGGTGCCCTGAACTTAT-GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT-GATTTAT-GGACAA-GATACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTTCTGCATGATGCGTCTGTATTTCAAGAGCAGTGCAGTGAAAGATGATCTTCAGATGGAGTTGATAAAAAAAAA]
[+] EMBL CF323553 [TTTTATCCACATAAGAACACTCGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGG GAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT G ]
[+] EMBL C74185 [ ACATAAGAACACTCGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCN GTTG N CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAANGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CC AAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTATTTGTCATCAATGATGG CCCANTTGATGCCAATCTG TTNCCACATACATGT CATCTCCTCGNA GCAGG AGATG ACT GGCCNCGGG ]
[+] EMBL CF300441 [ CGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATG ]
[+] EMBL AK121029 [ TCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTTCTGCATGATGCGTCTGTATTTCAAGAGCAGTGCAGTGAAAGATGATCTTCA ]
[+] EMBL CF338113 [ TCGGGGAAGTTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAAC ]
[+] EMBL CB096561 [ TTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGNGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCGA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAAGGACACATT ]
[+] EMBL AU173566 [ TTCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGC CCGTNGNCCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCNAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA NGCAGG CAGATG AACT GGCNGCCGGGCTAA CGA TT NCCGT CTTGTTGAACTGCCTTCCT G ]
[+] EMBL AK103503 [ TCGATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACA ]
[+] EMBL BP184998 [ aCGAGGGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTT ]
[+] EMBL AU078258 [ ATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC G CGTNG CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGAGGGCAGGGCCAGATGAAACTGGGCCGCCGGGCTAA CGAGTGCCCCGT C TGTTGAACTGCCTTCATGGGCAAGGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGGCATAACAATTGGNGCCCTGAACTTATGGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTaaaaa ]
[+] EMBL C22421 [ CCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC G CGTNGNCCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAAGNGAGGG CCCGTGC TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTC ]
[+] EMBL CA998392 [ TCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCC GCCGT G CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACC ]
[+] EMBL OSSS24621 [ GGCGTCGGAGAAGGAGGCGGCGCTCGCCCNNNCGT CCCAAC GACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAANGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATTGTTG CCAAAGTTGTTGCAAAGAAGGAGGCACTTTGAAGATGGCTACCGTA TTGTCATCAATGNTGGGCCCCGTNGNTGCC ATNTGNTTTACCACATACAatg ]
[+] EMBL AU091333 [ GGCGCTCGCC GCCGT G CCCANCGGACAACCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTCAaaaaa ]
[-] EMBL CF300440 [ GACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTttaaaaaa ]
[+] EMBL AU172808 [ AGAGGCATGTAGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTaaaaaa ]
[+] EMBL C22390 [ AGAAATACTCGGTTACCTCCTCTA TGTTG CCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCNATGGANTTATGGGACAA GATACATTGCGNTCTCACTAGTGATTACNGCGTTTTggggg ]
[+] EMBL C22389 [ CTCTA TGTTGCCCAAAGTTGTTGCAAAGCAGGAGGGAC TTGAAGATGGCTACCGTA TTGTCATCAATGATGGCCCCAGTGGATGCCAATCTG TTTACCACATACATGTACATCTCCTCGGA GGCAGG CAGATG AACT GGCCGCCGGGCTAA CGAGTG CCCGT C TGTTGAACTGCCTTCAT GGCAA GGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACT GGCATAACAATTGGTGCCCTGAACTTAT GCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTAT GATTTAT GGACAA GATACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTTCTGCATGATGCGTCTGTATTTCAAGAGCAGTGCAGTGAAAGATGATCTTCAGATGGAGTTGATAAAAAAAAA]
consensusID : consensus_16040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 639 fasta sequence
[ATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA-CCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGCTACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTACATCTCCTCGGAGGCAGGC-AGATGAACTGGCCGCC-GGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCANGACAGGACATGACCATCCTGCTATGATTTATGGACAAGACACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTNGNNAANNAAAAAAAANANNAANAN]
[+] EMBL CA756030 [ATCGATCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA CCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGCTACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTACATCTCCTCGGAGGCAGGC AGATGAACTGGCCGCCGGGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCANGACAGGACATGACCATCCTGCTATGATTTATGGACAAGACACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTNGNNAANNAAAAAAAANANNAANAN]
[+] EMBL BE040168 [ TCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA CCCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGCTACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTACATCTCCTCGGAGGCAGGC AGATGAACTGGCCGCC GGGCTAACGAGTGCCCGTCTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCANGACAGGACATGACCATCCTGCTATGATTTATGGACAAGACACATTGCGTTCTCACTAGTTATTACTGCTTTTTTTTTCCATGTNGNNAANNAAAAAAAANANNAANAN]
[-] EMBL BI306736 [ ggGGCGTTCGCCGCAGTGCCTAGGGACAACCCCCACCAT TTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGATGAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATTCCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATACTCGGTTACCTCCTTTATGTTGCCAAAGTTGTTGCAAAGCAGTAGGGACTTGAAGATGGCTACCGTATTGTCATCAATTATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTACATCTCTTCGGAGGCACGCTAGATGAACTGGCCGCC GGGTTAACGAGTGCCCGTTTGTTGAACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCATAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATGACCATCCTGCTATGATTTATGGACAAAACACATTGGGTTCTCATTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16040#1 TTTTATCCACATAAGAACACTCGCGGCGGCGACCACTTGTGCTCGGGGAAGTTCGATCGA 60
consensus_16040#2 -------------------------------------------------------ATCGA 5
consensus_16040#0 ---------------------------------------------------------CCA 3
* *
consensus_16040#1 TCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA---C 117
consensus_16040#2 TCCCTCACCATGGCGTCGGAGAAGGAGGCGGCGCTCGCCGCCGTGCCCAACGACAA---C 62
consensus_16040#0 GGCGTC-CGATGGCTTCGGAGAAGGAGGCGGCGCTCGCC-CCGTGCCCAACGACTAACCC 61
* ** * ***** ************************ ************** * *
consensus_16040#1 CCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGACGAT 177
consensus_16040#2 CCCACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGAT 122
consensus_16040#0 CCTACCATATTTGACAAGATCATCAAGAAGGAAATACCTTCCACTGTGGTATTTGAGGAT 121
** ***************************************************** ***
consensus_16040#1 GAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATT 237
consensus_16040#2 GAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATT 182
consensus_16040#0 GAGAAGGTTCTGGCTTTCAGAGACATAAATCCTCAAGCTCCGACCCACATTGTGATCATT 181
************************************************************
consensus_16040#1 CCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATA 297
consensus_16040#2 CCCAAAGTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATA 242
consensus_16040#0 CCCAA-GTGAAGGATGGATTAACTGGCCTATCAAAGGCAGAAGAGAGGCATGTAGAAATA 240
***** ******************************************************
consensus_16040#1 CTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGC 357
consensus_16040#2 CTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGC 302
consensus_16040#0 CTCGGTTACCTCCTCTATGTTGCCAAAGTTGTTGCAAAGCAGGAGGGACTTGAAGATGGC 300
************************************************************
consensus_16040#1 TACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTA 417
consensus_16040#2 TACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTA 362
consensus_16040#0 TACCGTATTGTCATCAATGATGGCCCCAGTGGATGCCAATCTGTTTACCACATACATGTA 360
************************************************************
consensus_16040#1 CATCTCCTCGGAGGCAGGCAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGA 477
consensus_16040#2 CATCTCCTCGGAGGCAGGCAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGA 422
consensus_16040#0 CATCTCCTCGGAGGCAGGCAGATGAACTGGCCGCCGGGCTAACGAGTGCCCGTCTGTTGA 420
************************************************************
consensus_16040#1 ACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCA 537
consensus_16040#2 ACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCA 482
consensus_16040#0 ACTGCCTTCATGGCAAGGATGTCACACTGCCTCTCCGTTGAATAATTCCTGTAACTGGCA 480
************************************************************
consensus_16040#1 TAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATG 597
consensus_16040#2 TAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCANGACAGGACATG 542
consensus_16040#0 TAACAATTGGTGCCCTGAACTTATGCTATATGTTTGTGGATGTTACCAGGACAGGACATG 540
************************************************ ***********
consensus_16040#1 ACCATCCTGCTATGATTTATGGACAAGATACATTGCGTTCTCACTAGTTATTACTGCTTT 657
consensus_16040#2 ACCATCCTGCTATGATTTATGGACAAGACACATTGCGTTCTCACTAGTTATTACTGCTTT 602
consensus_16040#0 ACCATCCTGCTATGATTTATGGACA-GACACATTGCGTTCTCACTAAAAAAAAAAATTTT 599
************************* ** ***************** * * ***
consensus_16040#1 TTTTTTCCATGTTGAATACTTGCTGTTGCCTGCATTGCTTCTGCATGATGCGTCTGTATT 717
consensus_16040#2 TTTTTTCCATGTNGNNAANNAAAAAAAANANNAANAN----------------------- 639
consensus_16040#0 TTCCAAAAAAAAAAAAAANANAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAACT 659
** * * *
consensus_16040#1 TCAAGAG--CAGTGCAGTGA----AAGATGATCTTCAGATGGAGTTGATAAAAAAAAA-- 769
consensus_16040#2 ------------------------------------------------------------
consensus_16040#0 CAAGGGGGGCCGTCCATTTGCCTTAGGAGCGTAACCCCCTATGGCCGGTTTAAAGTGGAT 719
consensus_16040#1 ------------------------------------------------------------
consensus_16040#2 ------------------------------------------------------------
consensus_16040#0 TGAAAACCTGGTTCCATTAATACTTGGCAATCCTTTTCAATGGGTAACAAAAGCCACCAA 779
consensus_16040#1 ------------------------------------------------------------
consensus_16040#2 ------------------------------------------------------------
consensus_16040#0 CTTTCAAATGCCCCTATGGAGGAACCCTTTTGGCTAACCCCCTGGGGACCCTGGAGAATT 839
consensus_16040#1 ------------------------------------------------
consensus_16040#2 ------------------------------------------------
consensus_16040#0 ACCCTACCCCTTCTTTCTTTTTTTTTCGTCCTCACAAAAGGCTTGGGG 887
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||