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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[CATAAATAGACCCTTAAAAGATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCCCCCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAGAGGCTGCAGCAGCAGCCTCCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTGCGAAGATTGCAAAAAGTTCAGTTCAGTAGCACGGCGAAACAGCCCAACAGTATTAGAATGGACAGACAGGAAAACATATTTATGTAAGGACAGAGAGAAGTATATGGACCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCTTCAGAAGATTATAGAAAAAGAAATAGTTAGCAACGTCATCGTGAAATATCTTCGTTAACACAAAACACAGTAACAAGTTAATATAAAGAACTGTTGGCAAGGTAGATCAGATTCATATAAGAATTGACTAATTGATTACAAAAGGGACATGAGGGCAATAGATAGCTAAAAATTTGGAAGTAGCAGTGAGATTTTACCAGTTTG]
[+] EMBL CB673964 [CATAAATAGACCCTTAAAAGATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCCCCCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAGAGGCTGCAGCAGCAGCCTCCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTGCGAAGATTGCAAAAAGTTCAGTTCAGTAGCACGGCGAAACAGCCCAACAGTATTAGAATGGACAGACAGGAAAACATATTTATGTAAGGACAGAGAGAAGTATATGGACCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCTTCAGAAGATTATAGAAAAAGAAATAGTTAGCAACGTCATCGTGAAATATCTTCGTTAACACAAAACACAGTAACAAGTTAATATAAAGAACTGTTGGCAAGGTAGATCAGATTCATATAAGAATTGACTAATTGATTACAAAAGGGACATGAGGGCAATAGATAGCTAAAAATTTGGAAGTAGCAGTGAGATTTTACCAGTTTG]
consensusID : consensus_16043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 592 fasta sequence
[TTTTTTGGGGCATGTAACTGGCTTGACAACCATTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAAC-AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT-AAGAGGCTGCAGCAGCAGCCT-CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGAATTAACGCCGGCTC]
[-] EMBL AU082445 [TTTTTTGGGGCATGTAACTGGCTTGACAACCATTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAAC AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTTCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGNTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGNTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTC ]
[-] EMBL AK059406 [ GGGGCATGTAACTGGCTTGACAACCATTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAGC AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGCTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGAATTA ]
[-] EMBL AK122061 [ ACAACCATTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAAC AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGAATTAACG ]
[+] EMBL CF300984 [ tttttTTC TAAATAGATGGATAAATTATGCAAC AGTACACAAAGAGGTACATAGTTCACTTCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGGATT ]
[-] EMBL OSS16365A [ AAATAGATGGATAAATTATGCAACAAGTACACAAAGAGGTACATAGGTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAAGA GCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTC CCTTCTCGGCGTACTGCTNAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGAATTAACGCCGGCTC]
[-] EMBL AU197756 [ ATAAATTATGCAAC AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTT ]
[-] EMBL CF300985 [ GTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCTCCCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTC ]
[-] EMBL CB685850 [ CTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTGGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTATGGTTC ]
consensusID : consensus_16043#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[TNTTNNNTTTNANNNNNTNNNNNNNGGCTGNACAACCATTATTNTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTNATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAGAGGCTGCAGCAGCAGCCTCCTCCAGGAGCTGCTTCACCTTGGTGANGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCCTCG]
[-] EMBL CA755037 [TNTTNNNTTTNANNNNNTNNNNNNNGGCTGNACAACCATTATTNTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTNATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAGAGGCTGCAGCAGCAGCCTCCTCCAGGAGCTGCTTCACCTTGGTGANGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCCTCG]
consensusID : consensus_16043#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 559 fasta sequence
[TTTTTTTTTTTTTTTTTTTGG-TTGACAA-CC-A-TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC-AT-CCCGAATTG-ATAGAATGGTAAGTTGTC-AGC-AA-CC-AGATTAGCATAGAGTTGTTC-AGCTGAC-AGAAGCCATGTAGCATAGAGTTC-ATAACTTCTT-AAGAGGCTGC-AGCAGC-AGCCTCCTCCAGGAGCTGCTTCACCTT-GGTGATGTAGTCGCTC-ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT-CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC-AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCT]
[-] EMBL AU174447 [TTTTTTTTTTTTTTTTTTTGGCTTGACAA CC A TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTC ]
[-] EMBL BI797105 [ TTTTTTTTTTAACGGG TTGACAAGCCGAGTTATTTTTCTA TGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACGAT CCCGAA TG ATAGAAGGGTAAGTTGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTTGGGTGATGTAG ]
[-] EMBL AY121834 [ TTTTTTTTTT TTGACAA CC A TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTGAATAGAATGGTAAGTTGTCAAGCAAA CCAAGATTAGCATAGAGTTGTTCAAGCTGACAAGAAGCCATGTAGCATAGAGTTCAATAACTTCTTAAAGAAGCTGCAAGCAGCAAGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTCAATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCT]
[-] EMBL AU082422 [ TTTTTTTTTT TTGACAA CC A TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAAACGGTGGCCTGCTTGTAGAGTCCATAGAGG ]
[-] EMBL AU082442 [ TTTTTTTGGCTTGACAA CC A TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AA CC AGATTAGCATAGNGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTNCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGNCCCTCTGGGCGAATCTGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCT ]
[-] EMBL AU082443 [ ttTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC A C CCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCCTTt ]
[-] EMBL C73357 [ TGGAT AATTATGCAACAGTACACAAAGAGGTACATAGTCCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AACCC AGATTAGCATAGAGTTGTTCAAGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTTAAAGA GCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTT ]
[-] EMBL OSS16464A [ ACATAGTCCAC ATCCCCGAATTG ATAGAATGGTAAG TGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATANCTTCTT AAGA GCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCA ]
[-] EMBL OSR19081A [ TTGAATAGAATGGTAAGTTGTCAAGCAAA CCAAGATTAGCATAGAGTTGTTCAAGCTGACAAGAAGCCATGTAGCATAGAGTTCAATAACTTCTTAAAGAAGCTGCAAGCAGCAAGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTCAATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCT]
consensusID : consensus_16043#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 527 fasta sequence
[TACGTCACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT-A-AGAGGCT-GCAGCAGCAGCCT----CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCT]
[+] EMBL CF308004 [TACGTCACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCATCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTA ]
[-] EMBL CB000989 [ tTTTTTTTTTGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCT]
[-] EMBL AU057154 [ TTTTTTTTTTTTTTTT TAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCNCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACNGCTCAAAATCCTC ]
[-] EMBL AU058350 [ TTTTTTTTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGGTGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT ANAGA GCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTT ]
[-] EMBL CF308003 [ TTTTTTTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCTCGCAGCACCACCCTTTCCCCTCCCAGAG TGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTAC ]
[-] EMBL AU082401 [ ttttTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCT ]
[-] EMBL AU065974 [ CATGTAGCATAGAGTTCATAACTTCTTAA AGA GCT GCAGCAGCAGCCT NCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACANNTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATCTGCCAGGACGAGCAGTATTGACATCTCCAACGGTGNCCTNCTTGTAGAGTCCATAGAGGATAAGCTTGNCCNCGTTGCTAGTGCTCTCCGGNAAGGTCTTCGACTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATANCGGCTTAAAGTTTTTC ]
consensusID : consensus_16043#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[TTTTGAAAGATTACAAGATAATATGATTCATAGGAGTAATAGTCTTCATAAATAGATGGATAAGTTATGCAAAAGTAAAAAGAGGTACATAGTTCGACATCCCGAATTGATAGAATGGTAAGTTGTTAGCAACCAGATTAGCATAGATGTGTTCAGGCTGAGCAGAAGGCATGTAGCATAGAGTTCATAACTTCTTAACGAGGTTGTAGCAGCAGCACTCCTCCAGGAGCTGCTTCACCTGGGCTGATGTAGTCGCGTGCGATAGCTTGCCTCCGTTCGAGTTGCGCTTACAAGCAGCTGTTCCAGTGCATCCCATTTCGCCCTGGTCCCTCGTGGGGCGAATATGCCAGGACGACGCGAGATATTGAGCATCTCCAACGGGTGGCCTGTCTTGTAGAGTCCATAGAGGATAAGCTTGTTCATCGTTGCTAGTGCTCTCGCGGACAAGGTGCTTCGCCGTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCT]
[-] EMBL BI798688 [TTTTGAAAGATTACAAGATAATATGATTCATAGGAGTAATAGTCTTCATAAATAGATGGATAAGTTATGCAAAAGTAAAAAGAGGTACATAGTTCGACATCCCGAATTGATAGAATGGTAAGTTGTTAGCAACCAGATTAGCATAGATGTGTTCAGGCTGAGCAGAAGGCATGTAGCATAGAGTTCATAACTTCTTAACGAGGTTGTAGCAGCAGCACTCCTCCAGGAGCTGCTTCACCTGGGCTGATGTAGTCGCGTGCGATAGCTTGCCTCCGTTCGAGTTGCGCTTACAAGCAGCTGTTCCAGTGCATCCCATTTCGCCCTGGTCCCTCGTGGGGCGAATATGCCAGGACGACGCGAGATATTGAGCATCTCCAACGGGTGGCCTGTCTTGTAGAGTCCATAGAGGATAAGCTTGTTCATCGTTGCTAGTGCTCTCGCGGACAAGGTGCTTCGCCGTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16043#1 ------TTTTTTGGGGCATGTAACTGGCTTGACAACCATTATTTTTCTATTGTGCAGTAC 54
consensus_16043#3 ------TTTTTTTTTTTTTTTTTTTGG-TTGACAACCATTATTTTTCTATTGTGCAGTAC 53
consensus_16043#2 TNTTNNNTTTNANNNNNTNNNNNNNGGCTGNACAACCATTATTNTTCTATTGTGCAGTAC 60
consensus_16043#4 -----------------TACGTCACGGCATGACAGTGTTTTTTTTTTTTTTTTTT----- 38
consensus_16043#5 ------------------------------------------------------------
consensus_16043#0 ------------------------------------------------------------
consensus_16043#1 ACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATA 114
consensus_16043#3 ACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATA 113
consensus_16043#2 ACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTNATAGTCTTCATA 120
consensus_16043#4 --------------------TTACAAGATAATATGATTCATAGGACTAATAGTCTTCATA 78
consensus_16043#5 ----------TTTTGAAAGATTACAAGATAATATGATTCATAGGAGTAATAGTCTTCATA 50
consensus_16043#0 --------------------------------------------------------CATA 4
****
consensus_16043#1 AATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 173
consensus_16043#3 AATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 172
consensus_16043#2 AATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 179
consensus_16043#4 AATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 137
consensus_16043#5 AATAGATGGATAAGTTATGCAAAAGTAAA--AAGAGGTACATAGTTCGACATCCCGAATT 108
consensus_16043#0 AATAGACCCTTAAAAGATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 63
****** *** ****** **** * **************** ************
consensus_16043#1 GATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 231
consensus_16043#3 GATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 230
consensus_16043#2 GATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 237
consensus_16043#4 GATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 195
consensus_16043#5 GATAGAATGGTAAGTTGTTAGCAACCAGATTAGCATAGATGTGTTCAGGCTGAGCAGAAG 168
consensus_16043#0 GATAGAATGGTAAGTTGTCAGCCCCCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 121
****************** *** *************** ******* **** ******
consensus_16043#1 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 289
consensus_16043#3 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 288
consensus_16043#2 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 295
consensus_16043#4 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 253
consensus_16043#5 GCATGTAGCATAGAGTTCATAACTTCTTAACGAGGTTGTAGCAGCAGCACTCCTCCAGGA 228
consensus_16043#0 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 179
***************************** **** ** ********* ***********
consensus_16043#1 GCTGCTTCACCTTGG-TGATGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCT- 342
consensus_16043#3 GCTGCTTCACCTTGG-TGATGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCT- 341
consensus_16043#2 GCTGCTTCACCTTGG-TGANGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCT- 348
consensus_16043#4 GCTGCTTCACCTTGG-TGATGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCT- 306
consensus_16043#5 GCTGCTTCACCTGGGCTGATGTAGTCGCGTGCGATAGCTTGCCTCCGTTCGAGTTGCGC- 287
consensus_16043#0 GCTGCTTCACCTTGG-TGATGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCTG 233
************ ** *** ******** ** **** ***** ***** ****
consensus_16043#1 ------TCA---ACAGCT---TTCCA-TGCATCCCATTTCGCCCTG-TCCCTCT-----G 383
consensus_16043#3 ------TCA---ACAGCT---TTCCA-TGCATCCCATTTCGCCCTG-TCCCTCT-----G 382
consensus_16043#2 ------TCA---ACAGCT---TTCCA-TGCATCCCATTTCGCCCTG-TCCCTCT-----G 389
consensus_16043#4 ------TCA---ACAGCT---TTCCA-TGCATCCCATTTCGCCCTG-TCCCTCT-----G 347
consensus_16043#5 ------TTACAAGCAGCTG--TTCCAGTGCATCCCATTTCGCCCTGGTCCCTCGTG---G 336
consensus_16043#0 CGAAGATTGCAAAAAGTTCAGTTCAGTAGCACGGCGAAACAGCCCAACAGTATTAGAATG 293
* ** * *** *** * * ** *
consensus_16043#1 GGCGAA--------------TATGCCAGGACGA---GCAGTATTGA-CATCTCCAACGG- 424
consensus_16043#3 GGCGAA--------------TATGCCAGGACGA---GCAGTATTGA-CATCTCCAACGG- 423
consensus_16043#2 GGCGAA--------------TATGCCAGGACGA---GCAGTATTGA-CATCTCCAACGG- 430
consensus_16043#4 GGCGAA--------------TATGCCAGGACGA---GCAGTATTGA-CATCTCCAACGG- 388
consensus_16043#5 GGCGAA--------------TATGCCAGGACGACGCGAGATATTGAGCATCTCCAACGGG 382
consensus_16043#0 GACAGACAGGAAAACATATTTATGTAAGGACAGAGAGAAGTATATG-GACCTTCAACAGC 352
* * * **** ***** * *** * ** **** *
consensus_16043#1 ------------------TGGCCTG-CTTGTAGAGTCCATAG---AGGATAAGCTT--GT 460
consensus_16043#3 ------------------TGGCCTG-CTTGTAGAGTCCATAG---AGGATAAGCTT--GT 459
consensus_16043#2 ------------------TGGCCTG-CTTGTAGAGTCCATAG---AGGATAAGCTT--GT 466
consensus_16043#4 ------------------TGGCCTG-CTTGTAGAGTCCATAG---AGGATAAGCTT--GT 424
consensus_16043#5 ------------------TGGCCTGTCTTGTAGAGTCCATAG---AGGATAAGCTT--GT 419
consensus_16043#0 TTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCTTCAGA 412
* **** * * * *** **** ***** *
consensus_16043#1 TC-TCGTTGCTAGTGCTCTCC--GGCAAGGT-CTTCGCC--TTCTCGGCGTACTGCTCAA 514
consensus_16043#3 TC-TCGTTGCTAGTGCTCTCC--GGCAAGGT-CTTC-CC--TTCTCGGCGTACTGCTCAA 512
consensus_16043#2 TC-TCGTTGCTAGTGCTCTCC--GGCAAGGT-CTTCGCC--TTCTCGGCGTACTGCTCAA 520
consensus_16043#4 TC-TCGTTGCTAGTGCTCTCC--GGCAAGGT-CTTCGCC--TTCTCGGCGTACTGCTCAA 478
consensus_16043#5 TCATCGTTGCTAGTGCTCTCGCGGACAAGGTGCTTCGCCG-TTCTCGGCGTACTGCTCAA 478
consensus_16043#0 AGATTATAGAAAAAGAAATAGTTAGCAACGT-CATCGTGAAATATCTTCGT-TAACACAA 470
* * * * * * *** ** * ** * ** *** * ***
consensus_16043#1 AATCCTCCTGCAGACCCATA------GCGGCT--TAAAGTTTTTCAGATTCTTCTCTTCT 566
consensus_16043#3 AATCCTCCTGCAGACCCATA------GCGGCT--TAAAGTTTTTCAGATTCTTCT----- 559
consensus_16043#2 AATCCTCCTGCAGACCCATA------GCGGCT--TAAAGTTTTTCAGATTCTTCTCCTCG 572
consensus_16043#4 AATCCTCCTGCAGACCCATA------GCGGCT--TAAAGTTTTTCAGATTCTTCTCT--- 527
consensus_16043#5 AATCCTCCTGCAGACCCATA------GCGGCT---------------------------- 504
consensus_16043#0 AACACAGTAACAAGTTAATATAAAGAACTGTTGGCAAGGTAGATCAGATTCATATAAGAA 530
** * ** *** * * *
consensus_16043#1 TCTTTTCTTGGAATTAACGCCGGCTC---------------------------------- 592
consensus_16043#3 ------------------------------------------------------------
consensus_16043#2 ------------------------------------------------------------
consensus_16043#4 ------------------------------------------------------------
consensus_16043#5 ------------------------------------------------------------
consensus_16043#0 TTGACTAATTGATTACAAAAGGGACATGAGGGCAATAGATAGCTAAAAATTTGGAAGTAG 590
consensus_16043#1 ---------------------
consensus_16043#3 ---------------------
consensus_16043#2 ---------------------
consensus_16043#4 ---------------------
consensus_16043#5 ---------------------
consensus_16043#0 CAGTGAGATTTTACCAGTTTG 611
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||