|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 985 fasta sequence
[CTTCCATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA-GAAAAAGCT-GAGGCCAAATGGT-GGAAG-AAGC-TTGTTCGAGATGATCAAAAGGCACCACAC-TTTGTGAAAG-TTGAC-TGGGACAAAT-GGGTTGA-TGAAGATGATGAT-GGTGCTGATGTCAACGT-GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT-GGAATGGGCGGAATGGGTGATATGATGGGTGGCA-TGGGTGGTATGGGTGG-CATGGGTG--GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG-CGGTATGGGTGGCA-TGGGTGG-CA-TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG-CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG-AGC--AATCGAAGGCCC-C-T-CTAC-ATAATTCCTTTCTCTGT-TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT-GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG-CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC-GCTCTGCAATCATATATTAAGCTTTGGAT-CGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK112034 [CTTCCATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTT ]
[+] EMBL CF315195 [ TTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGG ATGGGTGGAATGGGTGGGAATGG ]
[+] EMBL AK104798 [ TCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCT ]
[+] EMBL AU070089 [ gaactacgtCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACANGGTTTACATAACTGTACANTTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACANAGTAAATGTTGAGGNGAGCAAAATAAGTGTAGGTGTTAGGTNCATATTCTGTATTGTA GAAAANGCT GAGGCCAAATGGT GGAAG ANGCTTTGTTCGNGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC T ]
[+] EMBL AU182549 [ CTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT ]
[+] EMBL AU064496 [ TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACANTTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACANAGTAAATGTTGAGGAGAGCANAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACACTTTTGTGAAAG TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT NGTGCTGATGTCAACGT GGNTGGNATTGACTTTTCGA ]
[+] EMBL AU068730 [ TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAGAAAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTTAC TGGGNCAATG GGGTTGA TGAAGATGATGAT GGTGCTGATGTC ACGT GGATGG ATGGACTTT ]
[+] EMBL AU069265 [ TCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTTTTTNTNTGCTACAGCTGGAACTGATGGGAACTTATACGATTCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTNTTAGGTCCATATTCTGTATTGTAGGAAAAAGCTNTGGGCCCAATGGTt ]
[+] EMBL AU063226 [ nCGCAAAACCCTCNGCCCTCACCCNCCACCACCACCNTCNCCTCCACCGGTAAACNGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGTNGGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAGTTTGACTTGGGACAAATNGGGTTGATTGAGGATGATGATNGGT CTGATGTCAACGTNGGTTGGAtt ]
[+] EMBL AU069133 [ CGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGT GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TGGGACAAAT G ]
[+] EMBL AU175004 [ ACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTNGAGGAGAGCAAAATAAGTGTAGGTGTTAGGTCCATATTCTGTATTGTA GAAAAAGCT GAGGCCAAATGGN GGAAG AAGC TTGTTCGAGATGATCAAAAGGCACCACAC TTTGTGAAAG TTGAC TG ]
[-] EMBL CF315196 [ TTGAC TGGGACAAAT GGGTTGA TGAAGATGATGAT GGTGCTGATGTCAACGT GGATGGAATGGACTTTTCGAATTTTGGTGGCATGGGTGGAATGGGT GGAATGGGCGGAATGGGTGATATGATGGGTGGCA TGGGTGGTATGGGTGG CATGGGTG GCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCAaa aaa ]
[+] EMBL BI805680 [ GTGGCANTGGGTGGTATGGGTGGCCTTGGGTG GCCTGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCACTGGGTGGNCACTGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCNAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC CATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACCTTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCCACTGAGTACGCCAACCNTTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT GCTTTAAAAAAAAAA ]
[+] EMBL BI810542 [ TGCTATGGGT G CATGGGTGGCGCAT GCTGAGATGATGGGTGGCATGGGTGGTATGGGACGGTATGGGTGGCA C TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGCCTGTCTGAAGCCGG AAATCCCAGGATTCGGACGCTAAAACCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGTGTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATAGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGTCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT GCGGAAAAAAAAAA ]
[-] EMBL CA999278 [ TGGCTGAGATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT ]
[+] EMBL AU082211 [ GATGATGGGTGGCATGGGTGGTATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCAaa aaaaa ]
[+] EMBL AU175003 [ TATGGG CGGTATGGGTGGCA TGGGTGG CA TGGATGAGTNCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAT GCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C74668 [ GGGTGG CA TGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAAC ]
[+] EMBL C74670 [ TCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG ]
[-] EMBL AU225814 [ ccGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAG AGC AATCGAAGGCCC C T CTAC ATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAG CGgc ]
[-] EMBL AU225784 [ AGTCGGACGCTAAAGCCGAGACAAGTTAGAAGCAAAATCGAAGGCCCACATAATACAATAATTCCTTTCTCTGT TGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATC GCTCTGCAATCATATATTAAGCTTTGGAG CGg ]
[+] EMBL AU166780 [ ntnTGT TGCATCCCGTCTTTTATGGATNTGGTGAACTGAANAAAACATTTTACGTTAT GACGGTAGGGATGGGTGCTCCCTTGTAGAACGATG CTATGAAACTGGAGCTCCAACTGAGNACGCAAACCATTCTTGGATTGTTTTTNTTAATGCGCTTTGANGCTTCATCNGCTCTGCAATCATATATTAAGCTTTGGATGCTTTTAAAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_16047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence
[GGAATGGTTGAAATGGGCCGAATTGGNTGATTTAATGGGTTGCCATGGGTTGGTATGGTTGCCTGGGTGGCCATGGCTGAAGATGATGGGTTGGCATGGTTGGTATGG-CCGGTATGGGTTGCCA-TGGGTTGGCATGGATGAAGTTCGAGGACGAGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG-CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCTGTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGCTAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTGAATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU082205 [GGAATGGTTGAAATGGGCCGAATTGGNTGATTTAATGGGTTGCCATGGGTTGGTATGGTTGCCTGGGTGGCCATGGCTGAAGATGATGGGTTGGCATGGTTGGTATGG CCGGTATGGGTTGCCA TGGGTTGGCATGGATGAAGTTCGAGGACGAGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTG CTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCTGTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGCTAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTGAATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI805820 [ CATGGCTG AGATGATGGG TGGCATGGGTGGTATGGTGCGGTATGGTNTGGCACTGGG TGGCATGGATG AGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTGCCTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGC ATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAAC TTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCC ACTGAGTAC C AACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAaaaaa ]
[-] EMBL CA998942 [ TTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGAT ]
consensusID : consensus_16047#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGCAGTATGGGTGCAATGGGTTGATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGATGGGTGGCATGGGTGGCATGGATGAGTTCGAGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGCGAAAATCCAGGAGCGACGTAAAGCGAAGCAAGTAGAGCAATCGAGGCCCTCTACATAATTCCTTTCTCTGTTCATCCTGCTATATGGATCTGGTAACTAAGAAACATTTACGTATGCGTAGGATGGGTCTCCTTGAGACGTCTATGAACTGGACTC]
[+] EMBL OS0347A [ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGCAGTATGGGTGCAATGGGTTGATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGATGGGTGGCATGGGTGGCATGGATGAGTTCGAGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGCGAAAATCCAGGAGCGACGTAAAGCGAAGCAAGTAGAGCAATCGAGGCCCTCTACATAATTCCTTTCTCTGTTCATCCTGCTATATGGATCTGGTAACTAAGAAACATTTACGTATGCGTAGGATGGGTCTCCTTGAGACGTCTATGAACTGGACTC]
consensusID : consensus_16047#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[TGGACTGAAGGAGTAGAAACATCTTTTTATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGAGAGAGAGATGGATG]
[+] EMBL CF301165 [TGGACTGAAGGAGTAGAAACATCTTTTTATTCCCCAAAAAACCTCGCAAAACCCTCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGGTAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTTACATAACTGTACAATTAGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAGGTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTATACGAATCAAAGCTAGAGTTGAACGACAAAGTAAATGTTGAGGAGAGAGAGAGAGATGGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16047#0 ------------------------------------------------------------
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 --------------------------GGAATGGTTGAAATGGGCCGAATTGGNTGATTTA 34
consensus_16047#2 ACTTGTCGAATTTTGGTGGCATGGGTGGAATGGGTGGAATGGGCGGAAT-GGGTGATATG 59
consensus_16047#0 --------------------------------------------CTT---CCATTCCCCA 13
consensus_16047#3 ---------------------TGGACTGAAGGAGTAGAAACATCTTT---TTATTCCCCA 36
consensus_16047#1 ATGGGTTGCCATGGGTTGGTATGGTTGCC-TGGGTGGCCATGGCTGAAGATGATGGGTTG 93
consensus_16047#2 ATGGGTGGC-ATGGGC-AGTATGGGTGCAATGGGTTG--ATGGCTGA-GATGATGGGT-G 113
**
consensus_16047#0 AAAAACCTCGCAAAACCC---TCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGG 70
consensus_16047#3 AAAAACCTCGCAAAACCC---TCGGCCCTCACCCGCCGCCGCCGCCGTCGCCTCCACCGG 93
consensus_16047#1 GCATGGTTGGTATGGCCGGTATGGGTTGCCATGGGTTGGCATGGATGAAGTTCGAGGACG 153
consensus_16047#2 GCATGGGTGGTATGGGCGG-ATGGGT-GGCATGGGT-GGCATGGATGA-GTTCGAG-ACG 168
* * * * * * ** ** * * * * * * *
consensus_16047#0 TAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTT 130
consensus_16047#3 TAAACGGCAGCATGAGTCGGCACCCTGAAGTGAAGTGGGCTCAGAGGATTGACAAGGTTT 153
consensus_16047#1 AGATTGACGATGAAGAAGAAGTGTCTAAACCTCAAGACGCAGAGAAGGCTGCTGAAGCCG 213
consensus_16047#2 AGAGTGACGATGAAGAAGAAGTGTCTAAACCTCAAGCCGAGAAGAAGGCTGCTGAAGC-- 226
* * * ** ** * * *** * ** * *
consensus_16047#0 ACATAACTGTACAATT---AGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAG 187
consensus_16047#3 ACATAACTGTACAATT---AGCTGATGCTAAGGATGCTAAGGTCAATCTGGAACCAGAAG 210
consensus_16047#1 GAAAATCCCAGGAGTCGGACGCTAAAGCCGAGACAAGTTAGAGCAATCGAAGGCCCCTCT 273
consensus_16047#2 GAAAATCC-AGGAGC--GACG-TAAAGC-GAAGCAAGT-AGAGCAATCGAGG--CCCTCT 278
* * * * * * * ** * * ** ***** *
consensus_16047#0 GTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTAT--ACGAATCAAAG-- 243
consensus_16047#3 GTGTATTCTCTTTCTCTGCTACAGCTGGAACTGATGGGAACTTAT--ACGAATCAAAG-- 266
consensus_16047#1 ACATAATTCCTTTCTCTGTTGCATCCCGTCTTTTATGGATCTGGTGAACTGAAGAAAACA 333
consensus_16047#2 ACATAATTCCTTTCTCTGTT-CATCCTGC--TATATGGATCTGGT-AACTAAGAAACA-- 332
** * ********* * ** * * * *** ** * ** * **
consensus_16047#0 -CTAGAGTTG-AACGACAAAG-TAAATGTTGAGGAGAGCAAAA--TAAGTGTA--GGTGT 296
consensus_16047#3 -CTAGAGTTG-AACGACAAAG-TAAATGTTGAGGAGAGAGAGA--GAGATGGA--TG--- 316
consensus_16047#1 TTTTACGTTATGACGGTAGGGATGGGTGCTCCCTTGTAGAACGATGCTATGAAACTGGAG 393
consensus_16047#2 -TTTACGT----ATGCGTAGGATGGGT-CTCCTT---GAGACG--TCTATGAA-CTGGA- 379
* ** * * * * * * * ** * *
consensus_16047#0 TAGGTCCATATTCTGTATTGTAGAAAAAGCTGAGGCCAAATGGTGGAAGAAGCTTGTTCG 356
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 CTCCAACTGAGTACGCAAACCATTCTTGGATTGTTTTTCTTAATGCGCTTTGATGCTTCA 453
consensus_16047#2 CTC--------------------------------------------------------- 382
consensus_16047#0 AGATGATCAAAAGGCACCACACTTTGTGAAAGTTGACTGGGACAAATGGGTTGATGAAGA 416
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 TCGCTCTGCAATCATATATTAAGCTTTGGATGCTTTAATCTGCTTTTGTGAGATACTGCT 513
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 TGATGATGGTGCTGATGTCAACGTGGATGGAATGGACTTTTCGAATTTTGGTGGCATGGG 476
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 GTGCCCGTGCTAGAGTCCACTGAGCATGCAACAATTCATGTGATCTGACGATGCTTGTGC 573
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 TGGAATGGGTGGAATGGGCGGAATGGGTGATATGATGGGTGGCATGGGTGGTATGGGTGG 536
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 TAGACGAGTGAGGCAGTAGCACTGTTAGTTCCCAAGCTTGTTTTGAAAGGATGCATAGTG 633
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 CATGGGTGGCATGGCTGAGATGATGGGTGGCATGGGTGGTATGGGCGGTATGGGTGGCAT 596
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 AATCCCTATTTATTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 692
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 GGGTGGCATGGATGAGTTCGAGGACGAGAGTGACGATGAAGAAGAAGTGTCTAAACCTCA 656
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 ------------------------------------------------------------
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 AGACGCAGAGAAGGCTGCTGAAGCCGGAAAATCCCAGGAGTCGGACGCTAAAGCCGAGAC 716
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 ------------------------------------------------------------
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 AAGTTAGAGCAATCGAAGGCCCCTCTACATAATTCCTTTCTCTGTTGCATCCCGTCTTTT 776
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 ------------------------------------------------------------
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 ATGGATCTGGTGAACTGAAGAAAACATTTTACGTTATGACGGTAGGGATGGGTGCTCCCT 836
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 ------------------------------------------------------------
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 TGTAGAACGATGCTATGAAACTGGAGCTCCAACTGAGTACGCAAACCATTCTTGGATTGT 896
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 ------------------------------------------------------------
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 TTTTCTTAATGCGCTTTGATGCTTCATCGCTCTGCAATCATATATTAAGCTTTGGATCGT 956
consensus_16047#3 ------------------------------------------------------------
consensus_16047#1 ------------------------------------------------------------
consensus_16047#2 ------------------------------------------------------------
consensus_16047#0 TTAAAAAAAAAAAAAAAAAAAAAAAAAAA 985
consensus_16047#3 -----------------------------
consensus_16047#1 -----------------------------
consensus_16047#2 -----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||