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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 791 fasta sequence
[CAGCCGCCGCCGCCCGAGCAGAGAAGCCGCCTTCGCCGCCGCCGCCGCACTCCACCGCGCGCTCTCCGTCTCCGGCCGCCGCCAGACAAGATG-GTGAGAGTCAGTGTCCTCAATGACGCTCTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC-GTCAAAGGTGATCA-TCA-AGTTCCTCATCGTCAT-GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG-TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC-TTAA-CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC-ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC-GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA-TGG-AAGATTTTCTCAGG-TGTTAGCAAGAAGAGCTTTGTTAGT-AGT-GGGAGT-CTGAGAAC-TTGTT-AAGATTATTGTCTCCTATGTC-TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT-GCCTG-CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGGATCTTTTACAAGTTACTGAAAACTTTTTTGCGAGCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK062943 [CAGCCGCCGCCGCCCGAGCAGAGAAGCCGCCTTCGCCGCCGCCGCCGCACTCCACCGCGCGCTCTCCGTCTCCGGCCGCCGCCAGACAAGATG GTGAGAGTCAGTGTCCTCAATGACGCTCTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAA ]
[+] EMBL CF340441 [CAGCCGCCGCCGCCCGAGCAGAGAAGCCGCCTTCGCCGCCGCCGCCGCACTCCACCGCGCGCTCTCCGTCTCCGGCCGCCGCCAGACAAGATG GTGAGAGTCAGTGTCCTCAATGACGCTCTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTNTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGTGGGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGT ]
[+] EMBL CF334886 [ CCGCCGCCCGAGCAGAGAAGCCGCCTTCGCCGCCGCCGCCGCACTCCACCGCGCGCTCTCCGTCTCCGGCCGCCGCCAGACAAGATG GTGAGAGTCAGTGTCCTCAATGACGCTCTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGG ]
[+] EMBL AU078684 [ GCCCGAGCAGAGAAGCCGCCTTCGCCGCCGCCGCCGCACTCCACCGCGCGCTCTCTGTCTCCGGCCGCCGCCAGACAAGATG GTGAGAGTCAGTGTCCTCAATGACGCTCTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCT ]
[+] EMBL CA758711 [ AGCAGAGAAGCCGCCTTCGCCGCCGCCGCCGCACTCCACCGCGCGCTCTCCGTCTCCGGCCGCCGCCAGACAAGATG GTGAGAGTCAGTGTCCTCAATGATGCTCTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGC ]
[+] EMBL CB627575 [ CAGAGAAGCCGCCTTCGCCGCCGCCGCCGCACTCCACCGCGCGCTCTCCGTCTCCGGCCGCCGCCAGACAAGATG GTGAGAGTCAGTGTCCTCAATGATGCTCTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATTGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTAC ]
[+] EMBL C74727 [ nCAGAGAANCCGCCTTCNCCGCCGCCGCCGCACTCCACCGCGCGCTCTCCGTCTCCGGCCGCCGCCANANAAGATN GTGAGAGTCAGTGTCCTCAATGACGCTCTGAAAACCATGTACAATNCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC NTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT NCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCNGGACTGCTAAGCTGCTTCCCNCCCGTCAGTTTNGGNAC ATTGTCCTTA CACCTCTGCCGGAA ]
[+] EMBL OS10543A [ GCCGCCGCCGCCGCACTCCACCGCGCGCTCTCCGTCTCCGGCCGCCGCCAGACAAGATG GTGAGAGTCAGTGTCCTCAATGACGCTCTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGNC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTC ]
[-] EMBL BU673493 [ TCTCCGTCCGCCGCCAGACAAGATGTGT AGAGTCATGGTCCTCAATGATGCTCTGTAAACCATGTACTATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGGATCTTTTACAAGTTACTGAAAACTTTT ]
[+] EMBL BI796910 [ GAAGCGT GTAAGCGCCAAGTTCTTATCCGGCCCTCAGTCAAAGGTGATCA TCA AGTTCCTCATTGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCCATTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAACAGTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGTCGCCTG CCTTTTTGATAaaaaaa ]
[-] EMBL CB964446 [ CTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGG ]
[-] EMBL BU673659 [ CTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGG ]
[-] EMBL CB964433 [ CTTATCCGGCCCTC GTCAAAGGTGATCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGG ]
[-] EMBL CB965668 [ CCTC GTCAAAGGTGATCATTCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTAC AGTTACTAT AACTTCCTGGG ]
[-] EMBL CF334887 [ TCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGGTTCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTTTACTAGAGATATTCATCTCACA TGG AAGATTTTTTCAGG TGTTAGCAAAAAGAGCTTTGTTAGT AGT GGGAGT TTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGGATCTTTTACAAGTTACTGAAAACTTTTTTGCGAGCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB000751 [ TCA TCA AGTTCCTCATCGTCAT GCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGGATCaaaaaaaaa ]
[+] EMBL BI800295 [ TCA TCAGAGTTCCTCATTGTCATCGCAGAAGCATGGTTACATTGGTGAGTTTGAGTTTGTTGATGACCACCGG TCTGGCAAGATCGTGGTTGAGCTGAATGGACGCC TTAACCAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTGCCCTTTTTGATAaaaa ]
[+] EMBL BI796177 [ CGG TCTGCCAAGATCGT GTTGA CTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTT GTGTCAAGGAAATCGAGTCCTGGACTGCTA GCTGCTTCCCTCCCGTCAGTTTGGGTACAATTGTCCTTACCACCTCT CCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACACTGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTCGTGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCT CCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGGATCaaaa ]
[+] EMBL OSC21761 [ cngatnGGTTANNCTGAATGGACGNC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTNCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGGNAAGATTTTCTCAGGTTGTTAGCANGAAGAGCTTTNTTAGTAAGT NGGAGTNTTAANAACTTTNTTAAANATTAT ]
[+] EMBL AU078685 [ CTGAATGGACGCC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGaaaaaaa ]
[+] EMBL AA751288 [ CC TTAA CAAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGC GAAGAAC GTNGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA ]
[+] EMBL OSEN19421 [ TGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAACCGAGTCCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTTCTTAACACCTTTGCCGGAATCATGGTCCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTTTCAGG TGTTAGCAAGAAGAGCTTTTTTAGT AGT GGGAGT CTGAGAAC TTG ]
[-] EMBL BE039575 [ CCTGGACTGCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTAC ATTGTCCTTACCACCTCTGCCGGAATCATGGACCACGAAGAAGCGAGGCGGAAGAAC GTCGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACA TGG AAGATTTTCTCAGG TGTTAGCAAAAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCA ]
[+] EMBL AU197217 [ AGG TGTTAGCAAGAAGAGCTTTGTTAGT AGT GGGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG CCTTTTTGATAaaaaaa ]
[-] EMBL D42653 [ CTTTGTTAGT AGT GGAGT CTGAGAAC TTGTT AAGATTATTGTCTCCTATGTC TGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCT CATCGTATGATGGCTCAGAATCTTGCATGATGCGT GCCTG C ]
consensusID : consensus_16072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence
[TTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGCCTGAGAACTTGTTAAGATTATTGTCTCCTATGTCTGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGTGCCTGCCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGGATCTTTTACAAGTTACTGAAAACTTT]
[+] EMBL AK063144 [TTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGCCTGAGAACTTGTTAAGATTATTGTCTCCTATGTCTGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGGCTCAGAATCTTGCATGATGCGTGCCTGCCTTTTTGATACTCCTAATCTTTTACAAGTTACTATAAACTTCCTGGGATCTTTTACAAGTTACTGAAAACTTT]
consensusID : consensus_16072#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 339 fasta sequence
[CCCTTNTANCTTGGTNTNCAAGNAAAANNGAGCCCNGNACTNCTAAGCTTNCNTCCCCNCCCGTNANTTTGGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACATGGAAGATTTTCNCAGGTGTTANCAAGAANANCTTTGTTAGTAGTGGGAGTCTGAGAACTTGTTAAGATTATTGTCNCCTATGTCTGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCANCGTNTGATGGCTCAGAATCTTNCATGATGCGTGCCTGCCTTTTTNAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU089698 [CCCTTNTANCTTGGTNTNCAAGNAAAANNGAGCCCNGNACTNCTAAGCTTNCNTCCCCNCCCGTNANTTTGGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACATGGAAGATTTTCNCAGGTGTTANCAAGAANANCTTTGTTAGTAGTGGGAGTCTGAGAACTTGTTAAGATTATTGTCNCCTATGTCTGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCANCGTNTGATGGCTCAGAATCTTNCATGATGCGTGCCTGCCTTTTTNAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSC105412 [ gtcGGAGGCAAGGTGCTCGGCTTTTTCTACTAGAGATATTCATCTCACATGGAAGATTTTCTCAGGTGTTAGCAAGAAGAGCTTTGTTAGTAGTGGGAGTCNGAGAACTTGTTAAGATTATTGTCNCCTATGTCTGAATTACCCCCCAATCTGTTTTTATTTTGCTTGGCGACTGAGTGAGNTGCTGTACTTTTCTCCATCGTNTGATGGCTCAGAATCTTGCNTGATGCGTGCCTGCCTTTTTGATAAAAANAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16072#0 CAGCCGCCGCCGCCCGAGCAGAGAAGCCGCCTTCGCCGCCGCCGCCGCACTCCACCGCGC 60
consensus_16072#2 ------------------------------------------------------------
consensus_16072#1 ------------------------------------------------------------
consensus_16072#0 GCTCTCCGTCTCCGGCCGCCGCCAGACAAGATGGTGAGAGTCAGTGTCCTCAATGACGCT 120
consensus_16072#2 ------------------------------------------------------------
consensus_16072#1 ------------------------------------------------------------
consensus_16072#0 CTGAAAACCATGTACAATGCTGAGAAGCGTGGTAAGCGCCAAGTTCTTATCCGGCCCTCG 180
consensus_16072#2 ------------------------------------------------------------
consensus_16072#1 ------------------------------------------------------------
consensus_16072#0 TCAAAGGTGATCATCAAGTTCCTCATCGTCATGCAGAAGCATGGTTACATTGGTGAGTTT 240
consensus_16072#2 ------------------------------------------------------------
consensus_16072#1 ------------------------------------------------------------
consensus_16072#0 GAGTTTGTTGATGACCACCGGTCTGGCAAGATCGTGGTTGAGCTGAATGGACGCCTTAAC 300
consensus_16072#2 ------------------------------------------------------------
consensus_16072#1 ------------------------------------------------------------
consensus_16072#0 AAGTGTGGTGTCATCAGCCCACGCTTTGATGTTGGTGTCAAGGAAATCGAGTCCTGGACT 360
consensus_16072#2 ------------------------------------------------------------
consensus_16072#1 ------------------------------------------------------------
consensus_16072#0 GCTAGGCTGCTTCCCTCCCGTCAGTTTGGGTACATTGTCCTTACCACCTCTGCCGGAATC 420
consensus_16072#2 ----------------CCCTTNTANCTTGGTNTNCAAGNAAAANNGAGCC--CNGNACTN 42
consensus_16072#1 -----------TTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAAT 49
* * *
consensus_16072#0 ATGGACCACGAAGAAGCGAGGCGGAAGAACGTCGGAGGCAAGGTGCTCGGCTTTTTCTAC 480
consensus_16072#2 CTAAGCTTNCNT----CCCCNCCCGTNANTTTGGGAGGCAAGGTGCTCGGCTTTTTCTAC 98
consensus_16072#1 ACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTG-AA 108
* * ** *** ** * *** *
consensus_16072#0 TAGAGATATTCATCTCACATGGAAGATTTTCTCAGGTGTTAGCAAGAAGAGCTTTGTTAG 540
consensus_16072#2 TAGAGATATTCATCTCACATGGAAGATTTTCNCAGGTGTTANCAAGAANANCTTTGTTAG 158
consensus_16072#1 AAGAGAGTCAAAGAGTGCTTGAAA---TTGCCGGGAGGGAAGCGGATGGGGGCCGGCGAT 165
***** * * ** ** ** * * * * * * *
consensus_16072#0 TAGTGGGAGTCTGAGAACTTGTTAAGATTATTGTCTCCTATGTCTGAATTACCCCCCAAT 600
consensus_16072#2 TAGTGGGAGTCTGAGAACTTGTTAAGATTATTGTCNCCTATGTCTGAATTACCCCCCAAT 218
consensus_16072#1 GCGCCCCGGCCTGAGAACTTGTTAAGATTATTGTCTCCTATGTCTGAATTACCCCCCAAT 225
* * ************************* ************************
consensus_16072#0 CTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGG 660
consensus_16072#2 CTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCANCGTNTGATGG 278
consensus_16072#1 CTGTTTTTATTTTGCTTGGCGACTGAGTGAGCTGCTGTACTTTTCTCCATCGTATGATGG 285
************************************************* *** ******
consensus_16072#0 CTCAGAATCTTGCATGATGCGTGCCTGCCTTTTTGATACTCCTAATCTTTTACAAGTTAC 720
consensus_16072#2 CTCAGAATCTTNCATGATGCGTGCCTGCCTTTTTNAAA-----AAAAAAAAAAAAAAAAA 333
consensus_16072#1 CTCAGAATCTTGCATGATGCGTGCCTGCCTTTTTGATACTCCTAATCTTTTACAAGTTAC 345
*********** ********************** * * ** * ** *
consensus_16072#0 TATAAACTTCCTGGGATCTTTTACAAGTTACTGAAAACTTTTTTGCGAGCTAAAAAAAAA 780
consensus_16072#2 AAAAAA------------------------------------------------------ 339
consensus_16072#1 TATAAACTTCCTGGGATCTTTTACAAGTTACTGAAAACTTT------------------- 386
* ***
consensus_16072#0 AAAAAAAAAAA 791
consensus_16072#2 -----------
consensus_16072#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||