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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 752 fasta sequence
[TTTTTTTTTTTTTTTTTTTCTATGGCGGAAATATCAATAAAGAA-TGAATATGTTTTTTTGATGACTC--AA-GAG--C-AACA-GGC-AATTACATTTCCATTCCCAAGTATCACAAGTTTATT-GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA--GA---G-AAACCAGAGCC-TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG-TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC-CCGCCCTTGATTAACACAAA-GGTC-GGC-ATGGCC-TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT-CGATCTTGAAGAAGACGGC-GTCGGCGAAGCG-TCCGGCCATGTCCTTGAAGGCCGGCTCGA-TG-AA-GC-GGCA-GGGCCC-G-CACCAGGT-GGC-GGAGAAGTCGATCACGATCAGCTTGT-TGGGGT-TGCTCT-TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC-GGCCACCAC-GCGCG-AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT------TCTCTCTCTCTCTCT-TTTCTCGCCTTGCTCCT-CTTCGCTTCGCGTGAGCGCAAGCAACAACTCTTCTTGT]
[-] EMBL AU174111 [TTTTTTTTTTTTTTTTTTTCTATGGCGGAAATATCAATAAAGAATTGAATATGATCAGATGATGACTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAANAGGACAACCACAGGGTCTNTCACTCCTAGCACCGA NA G AAACCANAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTNTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCNAAAGTTCGTCGACAT CGATCTTGAAAAAa ]
[-] EMBL BI799971 [ tttttttttTAAAGAA TGAATATGATCAGATGATGACTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCG ]
[+] EMBL CB627373 [ AATATGATCAGATGATGACTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT TCTCTCTCTCTCTCT TTTCTCGCCTTGCTCCT CTTCGCTTCGCGTG ]
[+] EMBL CF307665 [ TTTTTTTGATGACTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGCTTACTCCCACTTCACATCGAATTTTGCAGCATT ]
[-] EMBL AU029400 [ ttttTTTTTTTGATGACTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAANGT TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA NGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATTAGCTTGT TGGGGT TGCTCT TGTGGGNGGCCCA TGCTCGTNCCAAGTGGCCGTGGAGTGGACGGGCAACCAA GCGCG AGTCG ]
[-] EMBL BI795376 [ TTTTTTTGATGACTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAG TTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAATGGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCCGATCTTGAAGAAGACGGCTGTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AACGCTGGCA GGGCCCTG CACCAGGT GGCTGGAGAAGTCGATCACGATCAGCTTGTATGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGG CGTGGAGTGGAC GGCCACCACTGCG ]
[-] EMBL BI795333 [ TTTTTTT T TTC AA GAG C AACA GGC AGGTACATTTCCATTCCCAAGTATCACAAGTTTATTGGTCTTAAACGCGTTTACTCCCACTTCACATCGAA TTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCC TGGTACTAAATGAGGAA GGAGGCATAAG TTGGGATTTAGGATGAGGAGGATGAAATGAACATG TGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGA TAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC GCCACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTG TGGGG TGCTCT TGTGGGCGCCCCACTGCTCGT CCAGGTGGCCGTGGAGTGGAC GGGCACCAC G ]
[-] EMBL BI798529 [ TTTTTTT T TTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTG AGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCCGTGGTACTAAATGAGGAATGCAGGCATAAGTTGGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGG C TCCACTTTCCATTGGCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGGGAAGCG TCCGGGCATGTCCTTGAAGGGCGGTCCGATTG AA GC GGGAGGGGCCC G GA CAGGTGGGCGGGAGAAGTCGATCACGATCAGCTTGT AGGGGTATGCTCTATGTGGGCGg ]
[-] EMBL AU096551 [ ttttttttTTTTTTTGATGACTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATNAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAA CGTTCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TG ]
[-] EMBL BI795568 [ TTTTTTGATGACTCCAAAGGAGGCCAAACAGGGCAAATTACATTTCCATTCCCAAGTATCACAAGTTTA T GTCTTAAACGCGTTTACTCCCACTTCACATCGAA TTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAAGGAAAGGAAAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTGGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACT ]
[-] EMBL CB627372 [ agaTGATGACTC AA GAG C AACA GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT TCTCTCTCTCTCTCT TTTCTCGCCATGCTCCT CTTCGCTTCGCGTGAGCGCAAGCAcc ]
[-] EMBL AK062383 [ A GGC AATTACATTTCCATTCCCAAGTATCACAAGTTTATT GTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGA GA G AAACCAGAGCC TGGTACTAAATGAGGAATGCAGGCATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATG TTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTC CCGCCCTTGATTAACACAAA GGTC GGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCTCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCT TTTCTCGCCTTGCTCCT CTTCGCTTCGCGTGAGCGCAAGCAACAACTCTTCTTGT]
[-] EMBL C74924 [ CTAACCTCCTTCNCCGCCCTTGATTAACACAAA GGTC GGCAATGGCCTTCCACTTTCCATTGCCTCGCCACTTCCGAAANTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGT TNCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT TCTCTCTCTCTCTC TCTCTCTTTTCTCg ]
[-] EMBL AU069205 [ TACCNTCNTTC CCGCCCTTGATTACCACAAA GGTCGGGC ATGGCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC GCGCG AGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGT TCTCTCTCTCTCTCTCTCTCT ]
[-] EMBL AU096550 [ GCC TCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGGC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GGC GGAGAAGTCGATCACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAC NCGCG AGTCG CGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCT TTTCTCGCCTTGCTCCTNCNT TNTTCGCGTGAGCGCAAGCAACAA ]
[-] EMBL C25952 [ caACTTTCAATTGCCTCGCCACTTCCGAAAGTTCGTCGACAT CGATCTTGAAGAAGACGNC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TGAAA GC GGCA GGGCCC G CACCAGGT GGC GGAGAANTCGATNACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTNCCANGTGGCCGTGGAGTGGAC GGCCACCAC GCGCGNANGNTNC CCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATNTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCT TTTCTCGCCTTGCTCCTNCAT TCTTCGCGTGAGCGCAAGCAACA ]
[-] EMBL C26989 [ CGACAT CGATCTTGAAGAAGACGNC GTCGGCGAAGCG TCCGGCCATGTCCTTGAAGGCCGGCTCGA TG AA GC GGCA GGGCCC G CACCAGGT GTC GGAGAAATCGATNACGATCAGCTTGT TGGGGT TGCTCT TGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGAC GGCCACCAN GCGCG ANGCTCC CCGTCGTCGGCGGCGGGCGGCGGCGTGAANATCGTCGANAAGAAGGAGCCCATTTCGGTNGCGTGCNTGGTTTGGT TNTNTNTCT ]
consensusID : consensus_16136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 447 fasta sequence
[TTTNTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG-CATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAGGTCGGCATGG-CCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCGATCTTGAAGAAGACGGCGTCGGCGAANGTCCGGCCATGTCCTTGAAGGCCGGCTCGATGAAGCG]
[-] EMBL C97916 [TTTNTTTTTTTTTTTTTTTTTTTTTTTTGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG CATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAGGTCGGCATGG CCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCGATCTTGAAGAAGACGGCGTCGGCGAANGTCCGGCCATGTCCTTGAAGGCCGGCTCGATGAAGCG]
[-] EMBL AU075354 [ TTTTTTTTTTTTTTTTTT T AACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGANAGAAACCAGAGCCTGGTACNAAATGAGGAATGCAGG CATAANTTTGGGATTTANGATGNGGAGGATGANATGNACATGTTGACNTTCCNCTCCAGTTCNTCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGNTTAACACAAAGGTCGGCATGGNCCTCCACTTTCCATNGCCTCGCCACTTCCGAAAGT ]
[-] EMBL CF330571 [ TTTTTTTTT TCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTT ]
[-] EMBL AU197591 [ TTTTTTGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG CATA ]
[-] EMBL CF307666 [ ATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCTTAAACGCGCTTACTCCCACTTCACATCGAATTTTGCAGCATTT ]
[-] EMBL AA749593 [ ACTAAATGAGGAATGCAGGACATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAGG CTGCAT ]
consensusID : consensus_16136#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 352 fasta sequence
[CGAAAGTCGCGACATCGATCTNAAAAAAACGCCGTCGGCGAAACGTCCGGCCATGCCTTGAA-GCCGGCTCGATGAAACGGCAGGGCCCGCACC-AGGTGNCGGAAGAAGTCGATCACGATC-AGCTTGTTGGGGTTGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGCGCGAAGNTNCCCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCTTTTCTCGCCTTGCTCCTNCNTTCTTCGCGTGAGCGCAAGCAACAACTCTTC]
[-] EMBL C74067 [CGAAAGTCGCGACATCGATCTNAAAAAAACGCCGTCGGCGAAACGTCCGGCCATGCCTTGAA GCCGGCTCGATGAAACGGCAGGGCCCGCACCAAGGTGGCGGAAGAAGTCGATCACGATCAAGCTTGTTGGGGTTGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGCGCGAAGNTNCCCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCTTTTCTCGCCTTGCTCCTNCNTTCTTCGCGTGAGCGCA ]
[-] EMBL OSC8841 [ GAAGGCCGGCTCGATGAAGCGGCAGGGCCCGCACC AGGTGNCGG AGAAATCGATTACGATC AGCTTGTTGGGGTTGCTCTTGTGGGCGCCNCACTGCTCGTNCNANGTGGCCGTGGAGTGGACGGCCACCACNCGCGAAG TNNCCCGTCGTCGGCGGCGGGCGGCNGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCTTTTCTCGCCTTGCTCCTNCATTCTTCGCGTGAGCGCAAGCAACAACTCTTC]
[-] EMBL OSC28371 [ ACC AGGTGNC GNAGAAGTCGATCACGATC AGCTTGTTGGGGTTGCTCTTNTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGCGCGAAGNTTNCCCGTCGTCGGCGNCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTNGGTCGCGTGCTTGGTTTGGTTCTCTCTNTCTGTCTCTCTCTTTTCTCGCCTTGCTCCTNCNTTCTTCGCGTGAGCGCAAGCAA ]
[-] EMBL OSS3822A [ CGATC AGCTTGTTGGGGTTGCTNTTGTGGGCGCCCCACTGCTCGTNCCAAGTGGCCGTGGAGTGGACGGCCACCANGCGCGAANGCNCCCCGTCGTCGGCNGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATNTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTNTCTCTCTCTTTTCTCGCCTTGCTCCTNCN ]
consensusID : consensus_16136#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence
[AAGGNGCATGCCCCACTTCCATGCTCGCACTTCGAAAGTCGCGACACGACTTAAGAAGACGCGTCGCGAAACGTCGGCCATGCCTTTAAGCCGGCTCGATGAAACGCAGGCCCGCACCAGGTGCGGAGAAGTCGATCACGATCAGCTTGTTGGGGTTGCTCTTGTGGCGCCCCACTGCTCGTCCCAGGTGNCGTGGAGTGGACGGCCACCACGCGCGAGTCCGCGTCGTCGGCGGCGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTNTGGTCTCTCTCTCTCTCTCTC]
[-] EMBL OS0115A [AAGGNGCATGCCCCACTTCCATGCTCGCACTTCGAAAGTCGCGACACGACTTAAGAAGACGCGTCGCGAAACGTCGGCCATGCCTTTAAGCCGGCTCGATGAAACGCAGGCCCGCACCAGGTGCGGAGAAGTCGATCACGATCAGCTTGTTGGGGTTGCTCTTGTGGCGCCCCACTGCTCGTCCCAGGTGNCGTGGAGTGGACGGCCACCACGCGCGAGTCCGCGTCGTCGGCGGCGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGCCCATCTCGGTCGCGTGCTTGGTNTGGTCTCTCTCTCTCTCTCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16136#2 ------------------------------------------------------------
consensus_16136#3 ------------------------------------------------------------
consensus_16136#0 TTTTTTTTTTTTTTTTTTTCTATGGCGGAAATATCAATAAAGAATGAATATGTTTTTTTG 60
consensus_16136#1 ------------------------------------------------------------
consensus_16136#2 ------------------------------------------------------------
consensus_16136#3 ------------------------------------------------------------
consensus_16136#0 ATGACTCAAGAGCAACAGGCAATTACATTTCCATTCCCAAGTATCACAAGTTTATTGTCT 120
consensus_16136#1 ------------------------------------------------------------
consensus_16136#2 ------------------------------------------------------------
consensus_16136#3 ------------------------------------------------------------
consensus_16136#0 TAAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACAACCACA 180
consensus_16136#1 ------------------------------------------------------------
consensus_16136#2 ------------------------------------------------------------
consensus_16136#3 ------------------------------------------------------------
consensus_16136#0 GGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAATGCAGG 240
consensus_16136#1 ------------------------------------------------------------
consensus_16136#2 ------------------------------------------------------------
consensus_16136#3 ------------------------------------------------------------
consensus_16136#0 CATAAGTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCCTCTCCAGT 300
consensus_16136#1 ------------------------------------------------------------
consensus_16136#2 ------------------------------------------------------------
consensus_16136#3 ------------------------------------------------------------
consensus_16136#0 TCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTAACACAAAG 360
consensus_16136#1 ----------------------------------TTTNTTTTTTTTTTTTTTTTTTTTTT 26
consensus_16136#2 --------------------------------------CGAAAGTCG--CGACATCGATC 20
consensus_16136#3 ------AAGGNGCATGCCCCACTTCCATGCTCGCACTTCGAAAGTCG--CGACA-CGA-C 50
consensus_16136#0 GTCGGCATGGCCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGTCGACATCGATC 420
consensus_16136#1 TTGACTCAAGAGCAACAGGCAATTACATTTCCAT-TCCCAAGTATCACAAGTTTATTGTC 85
* * * * *
consensus_16136#2 TN-AAAAAAACGCCGTCGGCGAAACGTCCGGCCATG-CCTTGAAG-CCGGCTCGATGA-A 76
consensus_16136#3 TT-AAGAAGACGC-GTCG-CGAAACGTC-GGCCATG-CCTTTAAG-CCGGCTCGATGA-A 103
consensus_16136#0 TTGAAGAAGACGGCGTCGGCGAAGCGTCCGGCCATGTCCTTGAAGGCCGGCTCGATGA-A 479
consensus_16136#1 TT-----AAACGCGTTTACTCCCACTTCACATCGAATTTTGCAGCATTTTTAAGAGGACA 140
* * *** * * ** * * * ** ** *
consensus_16136#2 ACGGCAGGGCC---CGCACCAGGTGNCGGAAGAAGTCGATCACGATCAGCTTGTTGGGGT 133
consensus_16136#3 ACGC--AGGCC---CGCACCAGGTGC--GGAGAAGTCGATCACGATCAGCTTGTTGGGGT 156
consensus_16136#0 GCGGCAGGGCC---CGCACCAGGTGGC-GGAGAAGTCGATCACGATCAGCTTGTTGGGGT 535
consensus_16136#1 ACCACAGGGTCTCTCACTCCTAGCACCGAGAGAAACCAGAGCCTGGTACTAAATGAGGAA 200
* ** * * * ** * **** * * * * **
consensus_16136#2 TGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGC 193
consensus_16136#3 TGCTCTTGTGG-CGCCCCACTGCTCGTCCCAGGTGNC-GTGGAGTGGACGGCCACCACGC 214
consensus_16136#0 TGCTCTTGTGGGCGCCCCACTGCTCGTCCCAGGTGGCCGTGGAGTGGACGGCCACCACGC 595
consensus_16136#1 TGCAGGCATAA--GTTTGGGATTTAGGATGAGGAGGATGAAATGAACATGTTGACTTTCC 258
*** * * * * *** * * * * * ** *
consensus_16136#2 GCGAAGNTNCCCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGC 253
consensus_16136#3 GCGAG---TCCGCGTCGTCGGCGGCGG-CGGCGGCGTGAACATCGTCGAGAAGAAGGAGC 270
consensus_16136#0 GCGAGTCGCCGCCGTCGTCGGCGGCGGGCGGCGGCGTGAACATCGTCGAGAAGAAGGAGC 655
consensus_16136#1 TCTCCAGTTCATCCTTCTTAGCACCAACCACGCGACTAACCTCCTTCCCGCCCTTGATTA 318
* * * * * ** * * * * * * * ** * *
consensus_16136#2 CCATCTCGGTCGCGTGCTTGGTTTGGTTCTCTCTCTCTCTCTCTCTCTTTTCTCGCCTTG 313
consensus_16136#3 CCATCTCGGTCGCGTGCTTGGTNTGGT-CTCTCTCTCTCTCTCTC--------------- 314
consensus_16136#0 CCATCTCGGTCGCGTGCTTGGTTTGGT------TCTCTCTCTCTCTCTTTTCTCGCCTTG 709
consensus_16136#1 ACACAAAGGTCG---GCATGGCCTCCACTTTCCATTGCCTCGCCACTTCCGAAAGTTCGT 375
** ***** ** *** * * *** *
consensus_16136#2 CTCCTNCNTTCTTCGCGTGAGCGCAAGCAACAACTCTTC--------------------- 352
consensus_16136#3 ------------------------------------------------------------
consensus_16136#0 CTCCTCTTCGCTTCGCGTGAGCGCAAGCAACAACTCTTCTTGT----------------- 752
consensus_16136#1 CGACATCGATCTTGAAGAAGACGGCGTCGGCGAANGTCCGGCCATGTCCTTGAAGGCCGG 435
consensus_16136#2 ------------
consensus_16136#3 ------------
consensus_16136#0 ------------
consensus_16136#1 CTCGATGAAGCG 447
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||