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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2066 fasta sequence
[GCTTTCCGCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGAGCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGTAGGAAATCGAAGCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGTGGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCGGTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGAGTCCGTTCGCCTGCGCGATTCGTTCTCCGAGATAAGGACCTTCAGTCACAATTACTACATGGAAGGCCAGGAGCGATGTACAACATATATGAATCGAGTTGTTAACGATTCAGTCCTGGGATTTCAAGCAGTAAGAGAGGGGATTTCAGCAATGGAATTTGATAAAAAGGGAATATACCTTGCATCAGTTACAGCCTCGGGATGTTTAACCGTGCATGATTTTGAGACCTTATACTGCTCCACATATGGTCCATCACGGGGTTTGCCAGATGAATCATCAAACTATTTGCTACATATATCAAACTCAATGCCCCTATGTGCTGTCCGATGGAATCCAGCAAATCAAGATGAGATAGTTTGTGTATCTAGACAAACTGACATGGTTCTCCTGTTTGATATTGGCTGTGTCTCGTCCACGCCAACTGAAATTTTACGGAAAGGAAGATCCAGATATCCTGTGCTCTCTGAATTCCGCAAAGGTTTGACTGATGTAGCTTTTTCTTCAGATGATAAGTCATGGTTATTTGCATCTGGCCTTGATGGAGCGGTCTTCATGTGGGACATGCGGCTAAGTAAAAAACACTGTCTTGAGCTCATAGGACATCCAGAATCTCAATTTAGCAGTGTCAAGCTAAATATAGATAACCGGACCGTGTTTGCTGCAACTAAAGAGGGCACCGTTCATGCCTGGGATCTCCGTGGAGGGAGGGCATCAGCTGCTTTTCAAAGCCATAATGAGGTTCAACAATTATCATCAGTGAAGATATCAACTTTGTTGGGCAAAATTCCATCGCTAAAGGACCAAACGAACATTGTGTCGAGTGAAATTCTTTCAATAGACTTCAACCCTAGTTGCTCATATCAGTTAGCCTTCCATCTTGACAATGGCTGGTCTGGAGCCTTGAACATTAACACCCTCAGTGTGAGTCACCTGCACTGCCCTCCTCCTGATTGGTTGGAGCACATGAACTTCATGTGGCAAAAGCTACATAGAAAACCGACCTGGTTGCCGACATCTTCAATTTATGCAGTTGGATCTGCCTCCAATACTGTTGGCATGCATCTACTGGATTTTCATCCAGATACAAGTTCAGCATGCCATGTCGACTACAATGAGGAAATAAGAGGCTCCGATGAAAAGAAACCTGCAGCAAACAAGTTTATTCCTTCATCTCAGAGAGTTGTTTCCTGTGCAGCACATCCCTTCTGTCATACTATACTTGCCGGTACTCAGTTTTCATCTTTGCTCGTGTTATCGCAAAAGCAAGAGTCTATCAAAAACTCGGAGTAGCGGTGTCATGGAACAATCTTGATTTGCCTCCAAGACAATATCTCCAAATGCAGTCACAGTGCTCTACATTAGCTCGTGGGCCGTCCTGCATCGGAGAATGATCAGCCGCATGGGAGCACAATCTATTGGTCCCACCACAGAGGCTCCCAACCTGATCGACCGGTCAAAAAGAACTAAATCTCTTGGCGTTACATGATTCGATCTTCTGCCAGTGCATTGCCTCCAAGATGGGCGACAGATTTCTGTGTTGCAACCGACCATGTATGTACTTTCATGGCATGCTCCTAGGGGCTCTGAAGGTTCGCTTACCTGTACATGATTTCCCCCGTTCCCTGAACTCCCTATCTCTGTAGATCGTACATAAGTTGTGTTTCCCAGTTTCTCGCAATGTCGGTGTATCTCCTGGATGTAATACTGTATAATGAACTGCTTCATCCGTTCCAAAATATAACATACTGGTACTAGATTATACATA]
[+] EMBL AK102016 [GCTTTCCGCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGAGCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGTAGGAAATCGAAGCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGTGGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCGGTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGAGTCCGTTCGCCTGCGCGATTCGTTCTCCGAGATAAGGACCTTCAGTCACAATTACTACATGGAAGGCCAGGAGCGATGTACAACATATATGAATCGAGTTGTTAACGATTCAGTCCTGGGATTTCAAGCAGTAAGAGAGGGGATTTCAGCAATGGAATTTGATAAAAAGGGAATATACCTTGCATCAGTTACAGCCTCGGGATGTTTAACCGTGCATGATTTTGAGACCTTATACTGCTCCACATATGGTCCATCACGGGGTTTGCCAGATGAATCATCAAACTATTTGCTACATATATCAAACTCAATGCCCCTATGTGCTGTCCGATGGAATCCAGCAAATCAAGATGAGATAGTTTGTGTATCTAGACAAACTGACATGGTTCTCCTGTTTGATATTGGCTGTGTCTCGTCCACGCCAACTGAAATTTTACGGAAAGGAAGATCCAGATATCCTGTGCTCTCTGAATTCCGCAAAGGTTTGACTGATGTAGCTTTTTCTTCAGATGATAAGTCATGGTTATTTGCATCTGGCCTTGATGGAGCGGTCTTCATGTGGGACATGCGGCTAAGTAAAAAACACTGTCTTGAGCTCATAGGACATCCAGAATCTCAATTTAGCAGTGTCAAGCTAAATATAGATAACCGGACCGTGTTTGCTGCAACTAAAGAGGGCACCGTTCATGCCTGGGATCTCCGTGGAGGGAGGGCATCAGCTGCTTTTCAAAGCCATAATGAGGTTCAACAATTATCATCAGTGAAGATATCAACTTTGTTGGGCAAAATTCCATCGCTAAAGGACCAAACGAACATTGTGTCGAGTGAAATTCTTTCAATAGACTTCAACCCTAGTTGCTCATATCAGTTAGCCTTCCATCTTGACAATGGCTGGTCTGGAGCCTTGAACATTAACACCCTCAGTGTGAGTCACCTGCACTGCCCTCCTCCTGATTGGTTGGAGCACATGAACTTCATGTGGCAAAAGCTACATAGAAAACCGACCTGGTTGCCGACATCTTCAATTTATGCAGTTGGATCTGCCTCCAATACTGTTGGCATGCATCTACTGGATTTTCATCCAGATACAAGTTCAGCATGCCATGTCGACTACAATGAGGAAATAAGAGGCTCCGATGAAAAGAAACCTGCAGCAAACAAGTTTATTCCTTCATCTCAGAGAGTTGTTTCCTGTGCAGCACATCCCTTCTGTCATACTATACTTGCCGGTACTCAGTTTTCATCTTTGCTCGTGTTATCGCAAAAGCAAGAGTCTATCAAAAACTCGGAGTAGCGGTGTCATGGAACAATCTTGATTTGCCTCCAAGACAATATCTCCAAATGCAGTCACAGTGCTCTACATTAGCTCGTGGGCCGTCCTGCATCGGAGAATGATCAGCCGCATGGGAGCACAATCTATTGGTCCCACCACAGAGGCTCCCAACCTGATCGACCGGTCAAAAAGAACTAAATCTCTTGGCGTTACATGATTCGATCTTCTGCCAGTGCATTGCCTCCAAGATGGGCGACAGATTTCTGTGTTGCAACCGACCATGTATGTACTTTCATGGCATGCTCCTAGGGGCTCTGAAGGTTCGCTTACCTGTACATGATTTCCCCCGTTCCCTGAACTCCCTATCTCTGTAGATCGTACATAAGTTGTGTTTCCCAGTTTCTCGCAATGTCGGTGTATCTCCTGGATGTAATACTGTATAATGAACTGCTTCATCCGTTCCAAAATATAACATACTGGTACTAGATTATACATA]
consensusID : consensus_1614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 980 fasta sequence
[GCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGAGCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGAAATCGAAGCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGTGGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCGGTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGAGTCCGTTCGCCTGCGCGATTCGTTCTCCGAGGTGACAGAAATCTCGGAAAAGAGCATTTGCTTTGTTTCCGTGTTGGTTATTACGAAGTTGTTTTCACTACTGGGATTACTGCATATGAGTTAGACACTGGAACTGGAATTCTCTAGAGCGGCTAACGACATATTTACTTTTTTGTTTCTTTTTAGTAATGCTAATCATAGGTTGTAGATTCCAATAGCAAAGCTGCTCCCTTATGTTTCTTCTGTTGCAATAAGCTGGTAGAAGTGCTAGAACTTGCGAAGTAGCACTTATAGGATGTCATTGGTCGCCCTGATCTCTTTCCGGTTGCTCAATGTTCTTTCCTGAGCTGGTGGTCAGGCATCAGGAAAGGGGTCCCTAACAGCTTAGGCGCGGGTTCGATACCGTCGTCGTGCTCGCTGCCTAGTCCATCTGGAAGGAAAGGAACAACAGGGTGTTCTATCAGCAGCAGCACTCGTGGCCGGACGTAGCTAGGGCAGCGGCAGAGGAGGCTGCCTTGTGGAGATCGGCAGGTCTGCTCCCGGAGTTGACAATCAGCATTAGGGTCGCAAAATTTATGCCGGGACATATCACCTTTGTAACCTTCTCTTTGTTTCTTTTTTCTGTCCGGGTTGGTTTGTAAGTTGTTGACTTTATTCCCTAATCGTAATACAAAGATGCGCAAATATTTTG]
[+] EMBL AK060151 [GCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGAGCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGAAATCGAAGCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGTGGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCGGTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGAGTCCGTTCGCCTGCGCGATTCGTTCTCCGAGGTGACAGAAATCTCGGAAAAGAGCATTTGCTTTGTTTCCGTGTTGGTTATTACGAAGTTGTTTTCACTACTGGGATTACTGCATATGAGTTAGACACTGGAACTGGAATTCTCTAGAGCGGCTAACGACATATTTACTTTTTTGTTTCTTTTTAGTAATGCTAATCATAGGTTGTAGATTCCAATAGCAAAGCTGCTCCCTTATGTTTCTTCTGTTGCAATAAGCTGGTAGAAGTGCTAGAACTTGCGAAGTAGCACTTATAGGATGTCATTGGTCGCCCTGATCTCTTTCCGGTTGCTCAATGTTCTTTCCTGAGCTGGTGGTCAGGCATCAGGAAAGGGGTCCCTAACAGCTTAGGCGCGGGTTCGATACCGTCGTCGTGCTCGCTGCCTAGTCCATCTGGAAGGAAAGGAACAACAGGGTGTTCTATCAGCAGCAGCACTCGTGGCCGGACGTAGCTAGGGCAGCGGCAGAGGAGGCTGCCTTGTGGAGATCGGCAGGTCTGCTCCCGGAGTTGACAATCAGCATTAGGGTCGCAAAATTTATGCCGGGACATATCACCTTTGTAACCTTCTCTTTGTTTCTTTTTTCTGTCCGGGTTGGTTTGTAAGTTGTTGACTTTATTCCCTAATCGTAATACAAAGATGCGCAAATATTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1614#0 GCTTTCCGCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGA 60
consensus_1614#1 -------GCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGA 53
*****************************************************
consensus_1614#0 GCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGTAGGAAATCGAA 120
consensus_1614#1 GCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCG----AAATCGAA 109
************************************************ ********
consensus_1614#0 GCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGT 180
consensus_1614#1 GCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGT 169
************************************************************
consensus_1614#0 GGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCG 240
consensus_1614#1 GGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCG 229
************************************************************
consensus_1614#0 GTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGA 300
consensus_1614#1 GTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGA 289
************************************************************
consensus_1614#0 GTCCGTTCGCCTGCGCGATTCGTTCTCCGAGATAAGGACCTTCAGTCACAATTACTACAT 360
consensus_1614#1 GTCCGTTCGCCTGCGCGATTCGTTCTCCGAGGTGA-----------CAGAAAT----CTC 334
******************************* * * ** ** * *
consensus_1614#0 GGAAGGCCAGGAGCGATGTACAACATATATGAATCGAGTTGTTAACGATTCAGTCCTGGG 420
consensus_1614#1 GGAA----AAGAGC-ATTTGCTTTGTTTCCGTGTTG-GTTATTACGAAGTTGTTTTC--- 385
**** * **** ** * * * * * * * *** *** * * *
consensus_1614#0 ATTTCAAGCAGTAAGAGAGGGGATTTCAGCAATGGAATTTGATAAAAAGGGAATATACCT 480
consensus_1614#1 ACTACTGGGATTACTGCATATGAGTTAGACACTGGAACTGGA------------ATTCTC 433
* * * * * ** * ** ** ** ***** * ** ** *
consensus_1614#0 TGCATCAGTTACAGCCTCGGGATGTTTAACCGTGCATGATTTTGAGACCTTATACTGCTC 540
consensus_1614#1 TAGAGCGGCTAA-----CGACATATTTACTT--------TTTTGTTTCTTTTTAGTAAT- 479
* * * * ** ** ** **** ***** * ** ** * *
consensus_1614#0 CACATATGGTCCATCACGGGGTTTGCCAGATGAATCATCAAACTATTTGCTACATATATC 600
consensus_1614#1 --------GCTAATCATAGG--TTGTAGATTCCAATAGCAAAGCTGCTCCCTTATGTTTC 529
* **** ** *** * * * **** * * ** * **
consensus_1614#0 AAACTCAATGCCCCTATGTGCTGTCCGATGGAATCCAGCAAATCAAGATGAGATAGTTTG 660
consensus_1614#1 ---TTC--TGTTGCAATAAGCTG---GTAGAAGTGCTAGAACTTGCGAAGTAGCACTTAT 581
** ** * ** **** * * * * * ** * ** * * **
consensus_1614#0 TGTATCTAGACAAACTGACATGGTTCTCCTGTTTGATATTGGCTGTGTCTCGTCCACGCC 720
consensus_1614#1 AGGATGTC-ATTGGTCGCCCTGAT-CTCTTTCCGGTTGCTCAATGT-TCTTTCCTGAGCT 638
* ** * * * * ** * *** * * * * *** *** * **
consensus_1614#0 AACTGAAATTTTACGGAAAGGAAGATCCAGATATCCTGTGCTCTCTGAATTCCGCAAAGG 780
consensus_1614#1 GGTGGTCAGGCATCAGGAAAGGGGTCCCTAACAGCTTAGGCGC---GGGTTCGATACCGT 695
* * * * ** * * ** * * * * ** * * *** * *
consensus_1614#0 TTTGACTGATGTAGCTTTTTCTTCAGATGATAAGTCATGGTTATTTGCATCTGGCCTTGA 840
consensus_1614#1 CGTCGTGCTCGCTGCCTAGTC--CATCTGGAAGGAAAGGAACAACAGGGTGTTCTATCAG 753
* * ** * ** ** ** * * * * * * * * *
consensus_1614#0 TGGAGCGGTCTTCATGTGGGACATGCGGCTAAGTAAAAAACACTGTCTTGAGCTCATAGG 900
consensus_1614#1 C--AGCAGCACTCGTG-GCCGGACGTAGCTAGGGCAGCGGCAGAGGAGGCTGCCTTGTGG 810
*** * ** ** * * * **** * * ** * ** **
consensus_1614#0 ACATCCAGAATCTCAATTTAGCAGTGTCAAGCTAAATATAGATAACCGGACCGTGTTTGC 960
consensus_1614#1 AGATCGGCAGGTCTGCTCCCG-------GAGTTGACAATCAGCATTAGGGTCGCAAAATT 863
* *** * * * ** * * ** * ** **
consensus_1614#0 TGCAACTAAAGAGGGCACCGTTCATGCCTGGGATCTCCGTGGAGGGAGGGCATCAGCTGC 1020
consensus_1614#1 TATGCCGGGACATATCACCTTTGTAACCTTCTCTTTGTTTCTTTTTTCTGTCCGGGTTGG 923
* * * * **** ** *** * * * * * **
consensus_1614#0 TTTTCAAAGCCATAATGAGGTTCAACAATTATCATCAGTGAAGATAT-CAACTTTGTTGG 1079
consensus_1614#1 TTTGTAAGTTGTTGACTTTATTCCCTAATCGTAAT--ACAAAGATGCGCAAATATTTTG- 980
*** ** * * *** *** * ** ***** *** * * ***
consensus_1614#0 GCAAAATTCCATCGCTAAAGGACCAAACGAACATTGTGTCGAGTGAAATTCTTTCAATAG 1139
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 ACTTCAACCCTAGTTGCTCATATCAGTTAGCCTTCCATCTTGACAATGGCTGGTCTGGAG 1199
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 CCTTGAACATTAACACCCTCAGTGTGAGTCACCTGCACTGCCCTCCTCCTGATTGGTTGG 1259
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 AGCACATGAACTTCATGTGGCAAAAGCTACATAGAAAACCGACCTGGTTGCCGACATCTT 1319
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 CAATTTATGCAGTTGGATCTGCCTCCAATACTGTTGGCATGCATCTACTGGATTTTCATC 1379
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 CAGATACAAGTTCAGCATGCCATGTCGACTACAATGAGGAAATAAGAGGCTCCGATGAAA 1439
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 AGAAACCTGCAGCAAACAAGTTTATTCCTTCATCTCAGAGAGTTGTTTCCTGTGCAGCAC 1499
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 ATCCCTTCTGTCATACTATACTTGCCGGTACTCAGTTTTCATCTTTGCTCGTGTTATCGC 1559
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 AAAAGCAAGAGTCTATCAAAAACTCGGAGTAGCGGTGTCATGGAACAATCTTGATTTGCC 1619
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 TCCAAGACAATATCTCCAAATGCAGTCACAGTGCTCTACATTAGCTCGTGGGCCGTCCTG 1679
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 CATCGGAGAATGATCAGCCGCATGGGAGCACAATCTATTGGTCCCACCACAGAGGCTCCC 1739
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 AACCTGATCGACCGGTCAAAAAGAACTAAATCTCTTGGCGTTACATGATTCGATCTTCTG 1799
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 CCAGTGCATTGCCTCCAAGATGGGCGACAGATTTCTGTGTTGCAACCGACCATGTATGTA 1859
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 CTTTCATGGCATGCTCCTAGGGGCTCTGAAGGTTCGCTTACCTGTACATGATTTCCCCCG 1919
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 TTCCCTGAACTCCCTATCTCTGTAGATCGTACATAAGTTGTGTTTCCCAGTTTCTCGCAA 1979
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 TGTCGGTGTATCTCCTGGATGTAATACTGTATAATGAACTGCTTCATCCGTTCCAAAATA 2039
consensus_1614#1 ------------------------------------------------------------
consensus_1614#0 TAACATACTGGTACTAGATTATACATA 2066
consensus_1614#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||