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Oryza sativa
cluster # 16145 cluster # 16145       Sequences # 29       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_16145#0 length = 732 sequences # 16  
consensus_16145#1 length = 486 sequences # 10  
consensus_16145#2 length = 458 sequences # 1  
consensus_16145#3 length = 367 sequences # 1  
consensus_16145#4 length = 198 sequences # 1  

consensusID : consensus_16145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 732
fasta sequence
                              [CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGCTGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAGGCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT-CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG-AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT-AGC-CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC-AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC-CTAACGTTGCTGTG--TGAA-TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA]

[+] EMBL BQ907086             [CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGCTGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAGGCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTaaaaaa                                                                                                                                         ]
[+] EMBL BI809582             [                                                                                                                                             GACGGCGAC GGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCCAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCCAGATGAAGAGGGAATATTATTATT AGC CTAAACCC ACCTGTAAAATCC TTAAGAGAGAGTAATCCC AGGCGAATGCTTCGTTCTTTC ATTTTTC AAATTTTAATCCTCC ACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTGAATGAA aaa                                                                    ]
[+] EMBL AK072758             [                                                                                                                                                                     CGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG  TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTC                            ]
[-] EMBL CB684129             [                                                                                                                                                                      GAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG  TGAA TCGGACTTGTATCTTGCTGCGATCGAGGGGCTATAAAACATTCT                           ]
[+] EMBL AU198171             [                                                                                                                                                                       AGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaa                                                                                                                                       ]
[+] EMBL BI807656             [                                                                                                                                                                                                 ATCCTC GC GCGAC GCGACGGCT CAGCCTCGACGACTTCC CCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCCAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCC ACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCC ACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG  TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTaaaaaaaa           ]
[+] EMBL AU161435             [                                                                                                                                                                                                                        CTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaaa                                                                                                                                      ]
[+] EMBL AU181875             [                                                                                                                                                                                                                              CCTCGACGNCTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCNCTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaaaaa aa                                                                                                                                 ]
[+] EMBL BI805427             [                                                                                                                                                                                                                                                                           CGAC GCTTCTTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGAC GCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCC AAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATTCCCC CTNCNCCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGT   CGAACTCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAAaa                               ]
[+] EMBL AU182719             [                                                                                                                                                                                                                                                                                                     TCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG  TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTA   A  AAAAAAA    ]
[+] EMBL AU197975             [                                                                                                                                                                                                                                                                                                        CCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG  TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA]
[+] EMBL AU197964             [                                                                                                                                                                                                                                                                                                          CGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG  TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA]
[+] EMBL AU057400             [                                                                                                                                                                                                                                                                                                          CGCATGATGATGGCCGCCACCGCCACCGCCACGGCGNCGGCGGACGNCCCGAGATCCGTGGTGATCNATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG  AAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG  TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA]
[+] EMBL AU222570             [                                                                                                                                                                                                                                                                                                            CATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG  TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTaaaaaa             ]
[+] EMBL AU078667             [                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAAT NTTCGTTCTTTCAAaaa                                                                                                                                       ]
[+] EMBL BI809465             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATGAAGAGGGAATATTATTATT AGCACTAAACCCAACCTGT AAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCACTAACGTTGCTGTGAATGAAaaa                                                                     ]


>consensus_16145#0 CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGC TGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAG GCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGG CGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCG CATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCG CATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGATCGTGGTG ATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGT GCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAGCCAGCACTACTAGATGCG CTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATTAGCCTAAAC CCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAT TTTTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGA ATCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGAT TAAAAAAAAAAA



consensusID : consensus_16145#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 486
fasta sequence
                              [ATCTCATCAACCTCTCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC-GCGC-TGATGGCGAGGTCGAC-ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG-AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC-GGGGAGGACGAGCTGATGGAGGCGTTCAAGGTGTTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG]

[+] EMBL AK058802             [ATCTCATCAACCTCTCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGACCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA                                                          ]
[+] EMBL C73948               [              TCCAAATCTCTCGATCNNCCATTCGAGCGAGATGAAGCTCTNCATCCAGTCATTCGNCCGCAAGCTCTNCCNGCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATNTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGNCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GNGC TGATNGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCT                                                                                                                                                                                                    ]
[+] EMBL OSS13975A            [                        TCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGGCGCTTGATGGCGAAGTCGACAACCAAGGTCGGTNCTTCCC                                                                                                                                                                                                              ]
[+] EMBL OSS13950A            [                        TCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TNATTGCGAAGTCGAC AACNAGGTCGGTGCTTCCCGCGGAGATCTNGCGGCGGGANTTTGAGGCCGTtc                                                                                                                                                                            ]
[+] EMBL C72307               [                         CGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAA CAGTTAGAGGGATGGTGGCATGTCCAAGAACGGGAGCTGCGTGAA CGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAN GCGC TGA                                                                                                                                                                                                                                               ]
[+] EMBL BF430708             [                          GATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA                                                          ]
[+] EMBL AU161280             [                           ATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCNGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGA                                                                                                                                                                                                                                               ]
[+] EMBL AU032897             [                               CCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAG AGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACG C GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGNGAGTTGGAGGCCGTGCTCCGGCGNCTCGGGCACGTGGAGCCCGACGACGAGGAAGTTGGACGCCGT                                                                                                                          ]
[+] EMBL CA754271             [                                      GAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA                                                          ]
[+] EMBL AU057399             [                                           AGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGGAGGACGAGCTGATGGAGGCGTTCAAGGTGTTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG]


>consensus_16145#1 ATCTCATCAACCTCTCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATC CAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGC GGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATC TCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGAC GACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGG GAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGGAGCTGGAC GCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGAGGACGAGCTGATGGAG GCGTTCAAGGTGTTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCC GCGGCG



consensusID : consensus_16145#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence
                              [CGGCGGATCGGCCCGAGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACGGTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCGCGCATCGTAGACCGTAGTGGAAAAAAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTAAGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAGCCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGTGCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTAAAAA]

[+] EMBL BQ906973             [CGGCGGATCGGCCCGAGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACGGTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCGCGCATCGTAGACCGTAGTGGAAAAAAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTAAGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAGCCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGTGCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTAAAAA]


>consensus_16145#2 CGGCGGATCGGCCCGAGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCA AAATAGATTCGGACGGTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACG TGTTGTGTGTTGGCGCGCATCGTAGACCGTAGTGGAAAAAAAAGCCAGCACGTACGTAGA GTGCGCGTGCGTAAGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGT TAGTGTAGTGTAGCCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGT CCCAGGCGAAGTGCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCC AACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTG CGATCGAGCTACTATAAAACATTCTTTAGATCTAAAAA



consensusID : consensus_16145#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence
                              [GTCCCTTTAGGAGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAACAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCCATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA]

[+] EMBL CB660691             [GTCCCTTTAGGAGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAACAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCCATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA]


>consensus_16145#3 GTCCCTTTAGGAGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCG GAAGCAGTAAGAGGGATGGTGGCATGTCCAACAACGGGAGCGGCGTGAAGCGGGCCATCT CCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACG ACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGG AGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACG CCGTCGCGGCCATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGG CGTTCAA



consensusID : consensus_16145#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence
                              [ATCCAAGATGAAGAGGGAATATTATTATTAGCCTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF320895             [ATCCAAGATGAAGAGGGAATATTATTATTAGCCTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_16145#4 ATCCAAGATGAAGAGGGAATATTATTATTAGCCTAAACCCAACCTGTAAAATCCATTAAG AGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAATTTTAATCCTCCAA CTTGGAGTTGGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_16145#2      ------------------------------------------------------------
consensus_16145#4      ------------------------------------------------------------
consensus_16145#0      CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGC 60
consensus_16145#1      ------------------------------------------------------------
consensus_16145#3      ------------------------------------------------------------
                                                                                   

consensus_16145#2      ------------------------------------------------------------
consensus_16145#4      ------------------------------------------------------------
consensus_16145#0      TGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAG 120
consensus_16145#1      ------------------------------------------------------------
consensus_16145#3      ------------------------------------------------------------
                                                                                   

consensus_16145#2      ------------------------------------------------------------
consensus_16145#4      ------------------------------------------------------------
consensus_16145#0      GCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGG 180
consensus_16145#1      ------------------------------------------------------------
consensus_16145#3      ------------------------------------------------------------
                                                                                   

consensus_16145#2      ------------------------------------------------------------
consensus_16145#4      ------------------------------------------------------------
consensus_16145#0      CGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCG 240
consensus_16145#1      ------------------------------------------------------------
consensus_16145#3      ------------------------------------------------------------
                                                                                   

consensus_16145#2      ---------------------------------------------CGGCGGATCGGCCCG 15
consensus_16145#4      ------------------------------------------------------------
consensus_16145#0      CATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCG 300
consensus_16145#1      ----------------------------------------------ATCTCATCAACCTC 14
consensus_16145#3      ------------------------------------------------------------
                                                                                   

consensus_16145#2      AGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACG 75
consensus_16145#4      ------------------------------------------------------------
consensus_16145#0      CATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGATCGTGGTG 360
consensus_16145#1      TCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCG 74
consensus_16145#3      -----------------------------------------------GTCCCTTTAGGAG 13
                                                                                   

consensus_16145#2      GTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCG 135
consensus_16145#4      ------------------------------------------------------------
consensus_16145#0      ATCC-ATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTG 419
consensus_16145#1      CAAG-CTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGA 133
consensus_16145#3      CAAG-CTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGA 72
                                                                                   

consensus_16145#2      CGCATCGTAGACCGTAGTGGAAAA--AAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTA 193
consensus_16145#4      ------------------------------------------------------------
consensus_16145#0      TGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAGCCAGCACTACTAGATGC 479
consensus_16145#1      GGGATGGTGGCATGTCCAAGAACGG-GAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAG 192
consensus_16145#3      GGGATGGTGGCATGTCCAACAACGG-GAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAG 131
                                                                                   

consensus_16145#2      AGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAG 253
consensus_16145#4      -----------------------ATCCAAGATGAAGAGGGAAT--ATTATTAT----TAG 31
consensus_16145#0      GCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAAT--ATTATTAT----TAG 533
consensus_16145#1      GCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATG 252
consensus_16145#3      GCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATG 191
                                               **  **  * **  *                    *

consensus_16145#2      CCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGT- 312
consensus_16145#4      CC-TAAACCCAACCT--GTAAAA-TCCA-TTAAGAGAGA--GTAATCCCAAGGCGAA--- 81
consensus_16145#0      CC-TAAACCCAACCT--GTAAAA-TCCA-TTAAGAGAGA--GTAATCCCAAGGCGAA--- 583
consensus_16145#1      GCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCC 312
consensus_16145#3      GCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCC 251
                        *     *   ***   **       *      ***     *            **    

consensus_16145#2      GCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAAC-TTGGAGTT 371
consensus_16145#4      -TGCTTCGTTCTT-----TCAATTTT-----TCAAATTTTAATCCTCCAAC-TTGGAGTT 129
consensus_16145#0      -TGCTTCGTTCTT-----TCAATTTT-----TCAAATTTTAATCCTCCAAC-TTGGAGTT 631
consensus_16145#1      GTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGGAGCTGGACGCCGTCGCGGCC 372
consensus_16145#3      GTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCC 311
                         *   **                        * *     *      *  * * *  *  

consensus_16145#2      GGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTA 431
consensus_16145#4      GGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 189
consensus_16145#0      GGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTA 691
consensus_16145#1      ATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAAGGTG 432
consensus_16145#3      ATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA---- 367
                          ** *                           *                    *    

consensus_16145#2      CTATAAAACATTCTTTAGATCTAAAAA--------------------------- 458
consensus_16145#4      AAAAAAAAA--------------------------------------------- 198
consensus_16145#0      CTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA------------- 732
consensus_16145#1      TTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG 486
consensus_16145#3      ------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)