These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 732 fasta sequence [CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGCTGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAGGCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT-CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG-AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT-AGC-CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC-AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC-CTAACGTTGCTGTG--TGAA-TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA] [+] EMBL BQ907086 [CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGCTGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAGGCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTaaaaaa ] [+] EMBL BI809582 [ GACGGCGAC GGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCCAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCCAGATGAAGAGGGAATATTATTATT AGC CTAAACCC ACCTGTAAAATCC TTAAGAGAGAGTAATCCC AGGCGAATGCTTCGTTCTTTC ATTTTTC AAATTTTAATCCTCC ACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTGAATGAA aaa ] [+] EMBL AK072758 [ CGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTC ] [-] EMBL CB684129 [ GAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGGGGCTATAAAACATTCT ] [+] EMBL AU198171 [ AGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaa ] [+] EMBL BI807656 [ ATCCTC GC GCGAC GCGACGGCT CAGCCTCGACGACTTCC CCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCCAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCC ACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCC ACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTaaaaaaaa ] [+] EMBL AU161435 [ CTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaaa ] [+] EMBL AU181875 [ CCTCGACGNCTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCNCTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaaaaa aa ] [+] EMBL BI805427 [ CGAC GCTTCTTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGAC GCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCC AAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATTCCCC CTNCNCCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGT CGAACTCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAAaa ] [+] EMBL AU182719 [ TCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTA A AAAAAAA ] [+] EMBL AU197975 [ CCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA] [+] EMBL AU197964 [ CGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA] [+] EMBL AU057400 [ CGCATGATGATGGCCGCCACCGCCACCGCCACGGCGNCGGCGGACGNCCCGAGATCCGTGGTGATCNATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA] [+] EMBL AU222570 [ CATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTaaaaaa ] [+] EMBL AU078667 [ GCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAAT NTTCGTTCTTTCAAaaa ] [+] EMBL BI809465 [ ATGAAGAGGGAATATTATTATT AGCACTAAACCCAACCTGT AAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCACTAACGTTGCTGTGAATGAAaaa ] consensusID : consensus_16145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 486 fasta sequence [ATCTCATCAACCTCTCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC-GCGC-TGATGGCGAGGTCGAC-ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG-AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC-GGGGAGGACGAGCTGATGGAGGCGTTCAAGGTGTTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG] [+] EMBL AK058802 [ATCTCATCAACCTCTCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGACCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA ] [+] EMBL C73948 [ TCCAAATCTCTCGATCNNCCATTCGAGCGAGATGAAGCTCTNCATCCAGTCATTCGNCCGCAAGCTCTNCCNGCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATNTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGNCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GNGC TGATNGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCT ] [+] EMBL OSS13975A [ TCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGGCGCTTGATGGCGAAGTCGACAACCAAGGTCGGTNCTTCCC ] [+] EMBL OSS13950A [ TCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TNATTGCGAAGTCGAC AACNAGGTCGGTGCTTCCCGCGGAGATCTNGCGGCGGGANTTTGAGGCCGTtc ] [+] EMBL C72307 [ CGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAA CAGTTAGAGGGATGGTGGCATGTCCAAGAACGGGAGCTGCGTGAA CGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAN GCGC TGA ] [+] EMBL BF430708 [ GATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA ] [+] EMBL AU161280 [ ATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCNGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGA ] [+] EMBL AU032897 [ CCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAG AGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACG C GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGNGAGTTGGAGGCCGTGCTCCGGCGNCTCGGGCACGTGGAGCCCGACGACGAGGAAGTTGGACGCCGT ] [+] EMBL CA754271 [ GAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA ] [+] EMBL AU057399 [ AGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGGAGGACGAGCTGATGGAGGCGTTCAAGGTGTTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG] consensusID : consensus_16145#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [CGGCGGATCGGCCCGAGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACGGTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCGCGCATCGTAGACCGTAGTGGAAAAAAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTAAGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAGCCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGTGCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTAAAAA] [+] EMBL BQ906973 [CGGCGGATCGGCCCGAGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACGGTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCGCGCATCGTAGACCGTAGTGGAAAAAAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTAAGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAGCCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGTGCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTAAAAA] consensusID : consensus_16145#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [GTCCCTTTAGGAGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAACAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCCATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA] [+] EMBL CB660691 [GTCCCTTTAGGAGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAACAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCCATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA] consensusID : consensus_16145#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [ATCCAAGATGAAGAGGGAATATTATTATTAGCCTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF320895 [ATCCAAGATGAAGAGGGAATATTATTATTAGCCTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16145#2 ------------------------------------------------------------ consensus_16145#4 ------------------------------------------------------------ consensus_16145#0 CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGC 60 consensus_16145#1 ------------------------------------------------------------ consensus_16145#3 ------------------------------------------------------------ consensus_16145#2 ------------------------------------------------------------ consensus_16145#4 ------------------------------------------------------------ consensus_16145#0 TGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAG 120 consensus_16145#1 ------------------------------------------------------------ consensus_16145#3 ------------------------------------------------------------ consensus_16145#2 ------------------------------------------------------------ consensus_16145#4 ------------------------------------------------------------ consensus_16145#0 GCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGG 180 consensus_16145#1 ------------------------------------------------------------ consensus_16145#3 ------------------------------------------------------------ consensus_16145#2 ------------------------------------------------------------ consensus_16145#4 ------------------------------------------------------------ consensus_16145#0 CGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCG 240 consensus_16145#1 ------------------------------------------------------------ consensus_16145#3 ------------------------------------------------------------ consensus_16145#2 ---------------------------------------------CGGCGGATCGGCCCG 15 consensus_16145#4 ------------------------------------------------------------ consensus_16145#0 CATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCG 300 consensus_16145#1 ----------------------------------------------ATCTCATCAACCTC 14 consensus_16145#3 ------------------------------------------------------------ consensus_16145#2 AGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACG 75 consensus_16145#4 ------------------------------------------------------------ consensus_16145#0 CATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGATCGTGGTG 360 consensus_16145#1 TCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCG 74 consensus_16145#3 -----------------------------------------------GTCCCTTTAGGAG 13 consensus_16145#2 GTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCG 135 consensus_16145#4 ------------------------------------------------------------ consensus_16145#0 ATCC-ATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTG 419 consensus_16145#1 CAAG-CTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGA 133 consensus_16145#3 CAAG-CTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGA 72 consensus_16145#2 CGCATCGTAGACCGTAGTGGAAAA--AAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTA 193 consensus_16145#4 ------------------------------------------------------------ consensus_16145#0 TGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAGCCAGCACTACTAGATGC 479 consensus_16145#1 GGGATGGTGGCATGTCCAAGAACGG-GAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAG 192 consensus_16145#3 GGGATGGTGGCATGTCCAACAACGG-GAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAG 131 consensus_16145#2 AGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAG 253 consensus_16145#4 -----------------------ATCCAAGATGAAGAGGGAAT--ATTATTAT----TAG 31 consensus_16145#0 GCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAAT--ATTATTAT----TAG 533 consensus_16145#1 GCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATG 252 consensus_16145#3 GCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATG 191 ** ** * ** * * consensus_16145#2 CCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGT- 312 consensus_16145#4 CC-TAAACCCAACCT--GTAAAA-TCCA-TTAAGAGAGA--GTAATCCCAAGGCGAA--- 81 consensus_16145#0 CC-TAAACCCAACCT--GTAAAA-TCCA-TTAAGAGAGA--GTAATCCCAAGGCGAA--- 583 consensus_16145#1 GCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCC 312 consensus_16145#3 GCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCC 251 * * *** ** * *** * ** consensus_16145#2 GCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAAC-TTGGAGTT 371 consensus_16145#4 -TGCTTCGTTCTT-----TCAATTTT-----TCAAATTTTAATCCTCCAAC-TTGGAGTT 129 consensus_16145#0 -TGCTTCGTTCTT-----TCAATTTT-----TCAAATTTTAATCCTCCAAC-TTGGAGTT 631 consensus_16145#1 GTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGGAGCTGGACGCCGTCGCGGCC 372 consensus_16145#3 GTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCC 311 * ** * * * * * * * * consensus_16145#2 GGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTA 431 consensus_16145#4 GGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 189 consensus_16145#0 GGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTA 691 consensus_16145#1 ATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAAGGTG 432 consensus_16145#3 ATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA---- 367 ** * * * consensus_16145#2 CTATAAAACATTCTTTAGATCTAAAAA--------------------------- 458 consensus_16145#4 AAAAAAAAA--------------------------------------------- 198 consensus_16145#0 CTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA------------- 732 consensus_16145#1 TTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG 486 consensus_16145#3 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||