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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 27 consensus length = 1468 fasta sequence
[GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC-GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG-ATGAGGATCCAG-AGG-CAATGG--TTA--TTGA-TCACA--TT-AATTATGC--TG-CCA-CTG--AT-GCTG--AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA-TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG-GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT-GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC-TGCGTCGTTTTCAACAATGGGAG-CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA-CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT-CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA-ATAGAATCATAACAACATAAGCAATTCGGTGAA]
[+] EMBL AK059111 [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGTATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAATCATAACAACATAAG ]
[+] EMBL AK099319 [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAGTTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGCACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCC ]
[+] EMBL CB626008 [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCANGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACT ]
[+] EMBL AU096734 [GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACNCCAAGCTCTCACNCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCC ]
[+] EMBL AF074379 [ TCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCCGCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCCTCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTCGGGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTGAATGAGGATCCAGAAGGCCAATGGGTTTAATTTGATTCACAATTTAAATTATGCCTTGCCCACCTGGAATGGCTGGAAAGGgttgaatt ]
[+] EMBL AU063380 [ nTCCTCTTCGCCCCCTCCACNCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGNCATGCGGTTAATCCATCTNACAGCTTGGTCCTGAAAGTCTTATCCGCCTCNCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTT CCCTCCATCT TTACAAGGTCGGCTATATAATTGG TTCTG TATGCA GNAAG AACAATGCTCGGGc ]
[+] EMBL CF304154 [ CAAAATTCAATTCTGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGG ]
[+] EMBL CF323824 [ GATCCTGGCAGCAGACTCTTC GGCCTCTGATCTTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTG ATGAGGATCCAG AGG CAATGG TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAG ]
[+] EMBL CA998282 [ TTA TTGA TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACAC ]
[+] EMBL CF324849 [ A TCACA TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGGNGGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGGACAG ]
[+] EMBL CF322881 [ TT AATTATGC TG CCA CTG AT GCTG AAGGTGATCATACTTTGATTGCTGGTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTATTATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCGTATG ]
[+] EMBL CA999716 [ ACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGA ]
[+] EMBL CB000642 [ CATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGC ]
[+] EMBL CA999345 [ CATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTA ]
[+] EMBL OSS3087A [ TGCGGTTAATCCATCTAACAGCTTGGTNCTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACATAACCAAGCAAATGGG ]
[+] EMBL OSS4019A [ TGCGGTTAATCCATCTAACAGCTTGGTNNTGAAAGTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGNTCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAATTTTGTGACAG AACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTTAAGGCAGTTAATGTCAAGCAT ]
[+] EMBL CA762689 [ GTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGAC ]
[+] EMBL CA762690 [ GTCTTATCCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGAC ]
[-] EMBL CB626009 [ AAAGTCTAAGTGGGCTTCCCCTCCATCTCTCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCATATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTCCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTG ]
[+] EMBL CF303802 [ TGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCTTGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGGCCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTATNGGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCNTGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCT ]
[-] EMBL CB651081 [ CAAGATAAGGCATGAGAAAGCTGGAAATGAACAA TTTGTGACAGAAACAAGCAAATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAGATAGAATCATAACAACATAAGCAATTCGGTGAA]
[+] EMBL CB621659 [ AAACGCTTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCATATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTCCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAA ]
[-] EMBL CB621660 [ AAGGTTGG GGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACAAGCTGGAAGCCATATGTTGCTGATGATGTTCAAGTTCAGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACATCCTTCAAAGTTCCAGATGTTTAT GGAGTTTTCCAGTTCAAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTCCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATTTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATTTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAAT ]
[+] EMBL CA305854 [ TTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAG CCTCCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACCGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAATCATAAC ]
[-] EMBL AU077999 [ ATATCCGTACTATGC TGCGTCGTTTTCAACAATGGGAGTCCTTCTTCATCTTCTCATTTGAGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACTCCCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAAT ]
[+] EMBL AU161286 [ CTATGC TGCGTCGTTTTCAACAATGGGAG CCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCA CGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCNCCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAA ]
[+] EMBL AK058399 [ CAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACT CCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCA ATAGAA ]
consensusID : consensus_16182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[GAGGGNCCATCTAAAAGGCAGTGAATGTCAAGCATACCAAGGTTGGGGAGACAAATGAGCCTGGCCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCNGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACANCCTTCAAAGTTCCAGATGTTTATGGAGTTTTCCAGTTCNAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCTTNCAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCAAAAAAAAAAAAAAA]
[+] EMBL AU096735 [GAGGGNCCATCTAAAAGGCAGTGAATGTCAAGCATACCAAGGTTGGGGAGACAAATGAGCCTGGCCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCNGTTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTTCAACANCCTTCAAAGTTCCAGATGTTTATGGAGTTTTCCAGTTCNAAGTTGAGTACCAGAGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCTTNCAGGCATAATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTTTGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCAAAAAAAAAAAAAAA]
consensusID : consensus_16182#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[CGGCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAATAGAAT]
[-] EMBL AU077998 [CGGCATATCCGTACTATGCTGCGTCGTTTTCAACAATGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGAGAGCACGAGTTACCTGAGGCTGATGAAACCCAGTGTTGGGGGTTCCAAGTTCATAGAACCGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCATCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAATAGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16182#0 GGTCGTCGCACTCGGCCTTCTTCGCGTCGCTCCAGGGGCGAGGGTTCGATCTCGACTTCC 60
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 GCCTCGCCGACGACCCCAAGCTCTCACTCCACCGCTACGGCCAGTACCTCTACGACGGCC 120
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 TCGTCCTCTTCGCCCCCTCCACCCCGCGTTTTGGAGGATCAGTGGACCAAAATTCAATTC 180
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 TGGAATTCATCGATGCTGGTCATGATATGATCCTGGCAGCAGACTCTTCGGCCTCTGATC 240
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 TTATCCGAGGCATTGCAACAGAGTGTGGGGTTGATTTTGATGAGGATCCAGAGGCAATGG 300
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 TTATTGATCACATTAATTATGCTGCCACTGATGCTGAAGGTGATCATACTTTGATTGCTG 360
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 GTGATGACCTCATCCAGTCAGATGTGATACTGGGGTCAAAGAAAATTGAGGCCCCTGTAT 420
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 TATTTCGGGGAATTGGACATGCGGTTAATCCATCTAACAGCTTGGTCCTGAAAGTCTTAT 480
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 CCGCCTCTCCGTCAGCATACTCAGCAAACCCAAAGTCTAAGTTGGCTTCCCCTCCATCTC 540
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 TCACAGGGTCGGCTATATCACTGGTTTCTGTTATGCAGGCAAGAAACAATGCTCGGGTCT 600
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 TGATATCTGGATCACTCGATCTGTTTAGCAACAGGTTCCTAAAATCTGGTGTTCAGAAGG 660
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 CCGGTAGCAAGATAAGGCATGAGAAAGCTGGAAATGAACAATTTGTGACAGAAACAAGCA 720
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ------------------------------------------------------------
consensus_16182#0 AATGGGTCTTCCATGAGAGGGGCCATCTAAAGGCAGTGAATGTCAAGCATAACAAGGTTG 780
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ---------------GAGGGNCCATCTAAAAGGCAGTGAATGTCAAGCATACCAAGGTTG 45
consensus_16182#0 GGGAGACAAATGAGCCTGGCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAGA 840
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 GGGAGACAAATGAGCCTGGCCATGTACCGCATCAATGATGACTTGGAATACTCTGTTGAG 105
consensus_16182#0 TCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCAGT 900
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 ATCTACGAATGGTCTGGGACCAGCTGGAAGCCGTATGTTGCTGATGATGTTCAAGTTCNG 165
consensus_16182#0 TTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTTT 960
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 TTTTACATGATGAGCCCTTATGTTCTGAAGACACTGTCGACTGACAAGAAGGGTGTATTT 225
consensus_16182#0 CAACATCCTTCAAAGTTCCAGATGTTTATGGAGTTTTCCAGTTCAAAGTTGAGTACCAGA 1020
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 TCAACANCCTTCAAAGTTCCAGATGTTTATGGAGTTTTCCAGTTCNAAGTTGAGTACCAG 285
consensus_16182#0 GGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCCTTACAGGCATA 1080
consensus_16182#2 ------------------------------------------------------------
consensus_16182#1 AGGCTTGGATATACTGGTCTCTCTCTTTCTAAGCAGATTCCAGTGCGCCTTNCAGGCATA 345
consensus_16182#0 ATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCTGCGTCGTTTTCAACAA 1140
consensus_16182#2 ------------------------CGGCATATCCGTACTATGCTGCGTCGTTTTCAACAA 36
consensus_16182#1 ATGAGTATGAAAGATTCATAACTTCGGCATATCCGTACTATGCTGCGTCGTTTTCAACAA 405
************************************
consensus_16182#0 TGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGA 1200
consensus_16182#2 TGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGA 96
consensus_16182#1 TGGGAGCCTTCTTCATCTTCTCATTTGTGTACCTGTACCACAAATAGATAACTCATGAGA 465
************************************************************
consensus_16182#0 GAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACC 1260
consensus_16182#2 GAGCACGAGTTACCTGAGGCTGATG------------------------------AAACC 126
consensus_16182#1 GAGCACGAGTTACCTGAGGCTGATGTGTGCTAGATCCATGCACTGATTGTGCTGTAAACC 525
************************* *****
consensus_16182#0 CAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTT 1320
consensus_16182#2 CAGTGTTGGGGGTTCCAAGTTCATAGAACC------------------------------ 156
consensus_16182#1 CAGTGTTGGGGGTTCCAAGTTCATAGAACCATATTTTTGTAGCGCAATCTAGAGCACCTT 585
******************************
consensus_16182#0 TGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCA 1380
consensus_16182#2 -GACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCA 215
consensus_16182#1 TGACGACCACTATCATTGATAACAAGAAATTGTACTCCTGCTGCTAGAATCTTCCAACCA 645
***********************************************************
consensus_16182#0 TCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAATAGA 1440
consensus_16182#2 TCCCCCTTTTCTTTCAATCTTGCCTGATGAAGAGCTGTTGAAACTTTCATAGTCAATAGA 275
consensus_16182#1 AAAAAAAAAAAAAA---------------------------------------------- 659
consensus_16182#0 ATCATAACAACATAAGCAATTCGGTGAA 1468
consensus_16182#2 AT-------------------------- 277
consensus_16182#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||