These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 906 fasta sequence [CTGTTGTGTTTATAAAGAGGTTAAATTCATATATGTTAGTGGACAAAATGATATGCAACTCAGGGAAAAGGCTGAAGCAGCATATCAAGCAGATTACAAGGAAGGCCCATTTTCATTTCTGCATTGTTGGAACATTCTTCGTGACCAACCAAAGTGGCATTCTTACTTGGAGGAACTTGAGAAGCCAAACAAACCAAAGATGGATGATTAAGTGGAAGTGATGGAGCAAATGTCCACTCCTAACAGTCCTGAAGATATTAAACGTCCAATAGGAACAAAAACTGCTAAGGCGCAACGTAATGGTAAAGGCAGACGCAAAAGGAAGGCAAAGGTTTATCTATCAGATACTGATGATGAAATTGACAAGCTTAAAGAAGTTCAGGAGATGGCAAATAAAGGTCGTGATGAACTACTAGAGACTCAGAGGCGTGTTGCTAGTGATAACCTTGAATCAAAAAAGTTAGCGCACCTTGCAGCCATGGAGCACAAGGAGGCTGTTATGTTGGAAACATATCGGTCTCTCATGTTACAAGATACAAAAGATATTCCTGATGATGTTAGATCCGAGCATTTGATGGCATTGAAGTGTATGAGGGAGAAGTTGTTTCCGTAATACTAAGGGACAATGGAAAACTTTGGTGCTAGCTTTTTGGTGCTTTCTGCTATGGTTTTGAGAGGTAGTGAAGATGCTCAATTTGGAAGGCTGGCAGCTTGTTTTGGTTCTGCTTGAGAAAGATAATCTAGTTATAAAGTAATTTTTAGTAATTCGCTGGTGTCATGTAAGAACACTTGTGTTGTTACCATCTATTGGCAGTATGGATCGTTGTAATGGCCTAATTTCTTTTGTCGAATGTTGATGTATGGATCATTGCAACAGACTAAGTTATTTTGTCGGTCTATGAATTA] [+] EMBL AK119927 [CTGTTGTGTTTATAAAGAGGTTAAATTCATATATGTTAGTGGACAAAATGATATGCAACTCAGGGAAAAGGCTGAAGCAGCATATCAAGCAGATTACAAGGAAGGCCCATTTTCATTTCTGCATTGTTGGAACATTCTTCGTGACCAACCAAAGTGGCATTCTTACTTGGAGGAACTTGAGAAGCCAAACAAACCAAAGATGGATGATTAAGTGGAAGTGATGGAGCAAATGTCCACTCCTAACAGTCCTGAAGATATTAAACGTCCAATAGGAACAAAAACTGCTAAGGCGCAACGTAATGGTAAAGGCAGACGCAAAAGGAAGGCAAAGGTTTATCTATCAGATACTGATGATGAAATTGACAAGCTTAAAGAAGTTCAGGAGATGGCAAATAAAGGTCGTGATGAACTACTAGAGACTCAGAGGCGTGTTGCTAGTGATAACCTTGAATCAAAAAAGTTAGCGCACCTTGCAGCCATGGAGCACAAGGAGGCTGTTATGTTGGAAACATATCGGTCTCTCATGTTACAAGATACAAAAGATATTCCTGATGATGTTAGATCCGAGCATTTGATGGCATTGAAGTGTATGAGGGAGAAGTTGTTTCCGTAATACTAAGGGACAATGGAAAACTTTGGTGCTAGCTTTTTGGTGCTTTCTGCTATGGTTTTGAGAGGTAGTGAAGATGCTCAATTTGGAAGGCTGGCAGCTTGTTTTGGTTCTGCTTGAGAAAGATAATCTAGTTATAAAGTAATTTTTAGTAATTCGCTGGTGTCATGTAAGAACACTTGTGTTGTTACCATCTATTGGCAGTATGGATCGTTGTAATGGCCTAATTTCTTTTGTCGAATGTTGATGTATGGATCATTGCAACAGACTAAGTTATTTTGTCGGTCTATGAATTA] consensusID : consensus_1621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 840 fasta sequence [TTGCTGTGCTTATAAGGAGGTGAAATCTATCTATGTTAGTGGACAAAATGAACTACAATTGATGGAGAAGGTCCATGCAACATATGAAGCAGATTACAAGGAAGGCCAATTTACATTTCTGCATTGTTGGAAAGCTCTCCGTGACCAACCAAAGTGGCATGCTTACTTGGAGGAACTTGAGAAGCCAAACAAAACAAAGTCAGATAATGAAGTGGAAGTAAGGGAACTTACATCCACTCCTAATAGCCCTGAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAATGGTAAAGACAAACGCAAAAGGAAGGCAAAGGTTTATCTATCGGATATGGATGATGAGATTGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGCTACTGGAGACTCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCATGGAGCACAAGGAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAAAGATATGCCTGATGATGTCAGATTTGAGCATGTGATGGCATTGAAGAGTATGAGGGAAAAGTTGTTTCCTAAAACTAAGGTATCGAAGATGCTCATTTTGGCTGCTTGTTTTGGCAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATCAAAACAGAACTTGTGTTCTAACTATCTACTCAGTATGTCGTTGTATGGGTCACTGTTATGGCCTATGAATGATGTATGGATCATTGTAATAGACTAAGTTCTTTTGTCAGTCTATGAACTAATTAG] [+] EMBL AK103644 [TTGCTGTGCTTATAAGGAGGTGAAATCTATCTATGTTAGTGGACAAAATGAACTACAATTGATGGAGAAGGTCCATGCAACATATGAAGCAGATTACAAGGAAGGCCAATTTACATTTCTGCATTGTTGGAAAGCTCTCCGTGACCAACCAAAGTGGCATGCTTACTTGGAGGAACTTGAGAAGCCAAACAAAACAAAGTCAGATAATGAAGTGGAAGTAAGGGAACTTACATCCACTCCTAATAGCCCTGAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAATGGTAAAGACAAACGCAAAAGGAAGGCAAAGGTTTATCTATCGGATATGGATGATGAGATTGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGCTACTGGAGACTCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCATGGAGCACAAGGAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAAAGATATGCCTGATGATGTCAGATTTGAGCATGTGATGGCATTGAAGAGTATGAGGGAAAAGTTGTTTCCTAAAACTAAGGTATCGAAGATGCTCATTTTGGCTGCTTGTTTTGGCAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATCAAAACAGAACTTGTGTTCTAACTATCTACTCAGTATGTCGTTGTATGGGTCACTGTTATGGCCTATGAATGATGTATGGATCATTGTAATAGACTAAGTTCTTTTGTCAGTCTATGAACTAATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1621#0 CTGTTGTGTTTATAAAGAGGTTAAATTCATATATGTTAGTGGACAAAATGATATGCAACT 60 consensus_1621#1 TTGCTGTGCTTATAAGGAGGTGAAATCTATCTATGTTAGTGGACAAAATGAACTACAATT 60 ** **** ****** ***** **** ** ******************** * *** * consensus_1621#0 CAGGGAAAAGGCTGAAGCAGCATATCAAGCAGATTACAAGGAAGGCCCATTTTCATTTCT 120 consensus_1621#1 GATGGAGAAGGTCCATGCAACATATGAAGCAGATTACAAGGAAGGCCAATTTACATTTCT 120 * *** **** * *** ***** ********************* **** ******* consensus_1621#0 GCATTGTTGGAACATTCTTCGTGACCAACCAAAGTGGCATTCTTACTTGGAGGAACTTGA 180 consensus_1621#1 GCATTGTTGGAAAGCTCTCCGTGACCAACCAAAGTGGCATGCTTACTTGGAGGAACTTGA 180 ************ *** ********************* ******************* consensus_1621#0 GAAGCCAAACAAACCAAAGATGGATGATTAAGTGGAAGTGATGGAGCAAATGTCCACTCC 240 consensus_1621#1 GAAGCCAAACAAAACAAAGTCAGATAATGAAGTGGAAGTAAGGGAACTTACATCCACTCC 240 ************* ***** *** ** ********** * *** * * ******** consensus_1621#0 TAACAGTCCTGAAGATATTAAACGTCCAATAGGAACAAAAACTGCTAAGGCGCAACGTAA 300 consensus_1621#1 TAATAGCCCTGAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAA 300 *** ** ************* ****** ****** *** ************ ***** consensus_1621#0 TGGTAAAGGCAGACGCAAAAGGAAGGCAAAGGTTTATCTATCAGATACTGATGATGAAAT 360 consensus_1621#1 TGGTAAAGACAAACGCAAAAGGAAGGCAAAGGTTTATCTATCGGATATGGATGATGAGAT 360 ******** ** ****************************** **** ******** ** consensus_1621#0 TGACAAGCTTAAAGAAGTTCAGGAGATGGCAAATAAAGGTCGTGATGAACTACTAGAGAC 420 consensus_1621#1 TGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGCTACTGGAGAC 420 ******** ************* * ****** ********** ***** ***** ***** consensus_1621#0 TCAGAGGCGTGTTGCTAGTGATAACCTTGAATCAAAAAAGTTAGCGCACCTTGCAGCCAT 480 consensus_1621#1 TCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCAT 480 ************* ******* ** ************* ****** ***** ******** consensus_1621#0 GGAGCACAAGGAGGCTGTTATGTTGGAAACATATCGGTCTCTCATGTTACAAGATACAAA 540 consensus_1621#1 GGAGCACAAGGAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAA 540 *************** ********************* ********** *********** consensus_1621#0 AGATATTCCTGATGATGTTAGATCCGAGCATTTGATGGCATTGAAGTGTATGAGGGAGAA 600 consensus_1621#1 AGATATGCCTGATGATGTCAGATTTGAGCATGTGATGGCATTGAAGAGTATGAGGGAAAA 600 ****** *********** **** ****** ************** ********** ** consensus_1621#0 GTTGTTTCCGTAATACTAAGGGACAATGGAAAACTTTGGTGCTAGCTTTTTGGTGCTTTC 660 consensus_1621#1 GTTGTTTCC-TAAAACTAAGG--------------------------------------- 620 ********* *** ******* consensus_1621#0 TGCTATGGTTTTGAGAGGTAGTGAAGATGCTCAATTTGGAAGGCTGGCAGCTTGTTTTGG 720 consensus_1621#1 ------------------TATCGAAGATGCTCATTTTGG--------CTGCTTGTTTTGG 654 ** *********** ***** * *********** consensus_1621#0 TTCTGCTTGAGAAAGATAATCTAGTTATAAAGTAATTTTTAGTAATTCGCTGGTGTCATG 780 consensus_1621#1 CAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATC 714 ***** ** **** ** *** **** * ******* ****** * * * * * ** consensus_1621#0 TAAG-AACACTTGTGTTGTTACCATCTATTGGCAGTATGGATCGTTGTAATGGCCTAATT 839 consensus_1621#1 AAAACAGAACTTGTGTTCTAACTATCTACT--CAGTATG--TCGTTGTATGGGTC--ACT 768 ** * ********* * ** ***** * ******* ******** ** * * * consensus_1621#0 TCTTTTGTCGAATGTTGATGTATGGATCATTGCAACAGACTAAGTTATTTTGTCGGTCTA 899 consensus_1621#1 GTTATGGCCTATGAATGATGTATGGATCATTGTAATAGACTAAGTTCTTTTGTCAGTCTA 828 * * * * * ***************** ** ********** ******* ***** consensus_1621#0 TGAATTA----- 906 consensus_1621#1 TGAACTAATTAG 840 **** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||