cluster # 1622

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1622 cluster # 1622 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1622#0 length = 511 sequences # 1

consensus_1622#1 length = 403 sequences # 1

consensusID : consensus_1622#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [CCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACATGTAATTTGTGGGGAAAAAAAAAGCTGAGATGAGAGAGAGAGCACACTGTGGAGAGAGATAGAGAGAAGAGAAGAGAAGAGATCATCATCATCTCATAGGCAGAAAAATAGCTAGCTAGAGCAGCCAATTCAACAACCAAACGAAGAACCCAAAAAAAATTCCTGCAAGATTTCATCGCCGGTGGTCGATCAAGAAGGAGATCAAGAACACAGATCGACTACCGACCGCGTTCTTCCTCGTCTCCGGCCGGTCGATGATCTTGGAAAGGCGGCGGCGAGCGGAAGATCAATTTGGGATGCATTGATGAACAAGAAGGAAGGAGAGATCAACAAAATCATGGGAGGAGAAGAGAAGCAAAGAAAGTGTAAGTGCACTAGCTAGTGTTGCTACTACTTGATTTGCTAGCTAGCTAGCTCTACTTGGCTTCTTGGCTTCTTGATCTCCTTCCTTGGGTGGTATGTAGTAGCTTAT]

[+] EMBL CF324241             [CCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACATGTAATTTGTGGGGAAAAAAAAAGCTGAGATGAGAGAGAGAGCACACTGTGGAGAGAGATAGAGAGAAGAGAAGAGAAGAGATCATCATCATCTCATAGGCAGAAAAATAGCTAGCTAGAGCAGCCAATTCAACAACCAAACGAAGAACCCAAAAAAAATTCCTGCAAGATTTCATCGCCGGTGGTCGATCAAGAAGGAGATCAAGAACACAGATCGACTACCGACCGCGTTCTTCCTCGTCTCCGGCCGGTCGATGATCTTGGAAAGGCGGCGGCGAGCGGAAGATCAATTTGGGATGCATTGATGAACAAGAAGGAAGGAGAGATCAACAAAATCATGGGAGGAGAAGAGAAGCAAAGAAAGTGTAAGTGCACTAGCTAGTGTTGCTACTACTTGATTTGCTAGCTAGCTAGCTCTACTTGGCTTCTTGGCTTCTTGATCTCCTTCCTTGGGTGGTATGTAGTAGCTTAT]




>consensus_1622#0
CCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACATGTAATTTGTGGGGAAAAAAA
AAGCTGAGATGAGAGAGAGAGCACACTGTGGAGAGAGATAGAGAGAAGAGAAGAGAAGAG
ATCATCATCATCTCATAGGCAGAAAAATAGCTAGCTAGAGCAGCCAATTCAACAACCAAA
CGAAGAACCCAAAAAAAATTCCTGCAAGATTTCATCGCCGGTGGTCGATCAAGAAGGAGA
TCAAGAACACAGATCGACTACCGACCGCGTTCTTCCTCGTCTCCGGCCGGTCGATGATCT
TGGAAAGGCGGCGGCGAGCGGAAGATCAATTTGGGATGCATTGATGAACAAGAAGGAAGG
AGAGATCAACAAAATCATGGGAGGAGAAGAGAAGCAAAGAAAGTGTAAGTGCACTAGCTA
GTGTTGCTACTACTTGATTTGCTAGCTAGCTAGCTCTACTTGGCTTCTTGGCTTCTTGAT
CTCCTTCCTTGGGTGGTATGTAGTAGCTTAT

consensusID : consensus_1622#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [CGGCCGGTGAGCAGAGCTGGGACCTGCCGACGCCGTCGTCGTCCAACGTCGAGGCGAGCATCATCGCGTCGGACGCCGCTCATGGCCGCCGCGGCCGCGTCGATGAACCCGGCGGTCAGCGCCGCCGCCGCCTCCACGGCGCCGTCCGCGCAGTCGCTCCTCTACTGGGGCAACGGCGGCATTGGCGCCGCCGCCGCGGCATGGCCGGACCTCGCCAACTGCGGATCCTCCATAGCGACGCTCTTCTAGCTAGCCCAGCCTGCCGNGCGCGCCGCCTCCACGCCGCCGACTGTGCTAGCTAGCTAGCTAGCTCGTCGCCGTTCGCCGTCGTCGTTAACTCTATTTTTTTTCCACCTTAATTTTCCCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACA]

[+] EMBL AU166708             [CGGCCGGTGAGCAGAGCTGGGACCTGCCGACGCCGTCGTCGTCCAACGTCGAGGCGAGCATCATCGCGTCGGACGCCGCTCATGGCCGCCGCGGCCGCGTCGATGAACCCGGCGGTCAGCGCCGCCGCCGCCTCCACGGCGCCGTCCGCGCAGTCGCTCCTCTACTGGGGCAACGGCGGCATTGGCGCCGCCGCCGCGGCATGGCCGGACCTCGCCAACTGCGGATCCTCCATAGCGACGCTCTTCTAGCTAGCCCAGCCTGCCGNGCGCGCCGCCTCCACGCCGCCGACTGTGCTAGCTAGCTAGCTAGCTCGTCGCCGTTCGCCGTCGTCGTTAACTCTATTTTTTTTCCACCTTAATTTTCCCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACA]




>consensus_1622#1
CGGCCGGTGAGCAGAGCTGGGACCTGCCGACGCCGTCGTCGTCCAACGTCGAGGCGAGCA
TCATCGCGTCGGACGCCGCTCATGGCCGCCGCGGCCGCGTCGATGAACCCGGCGGTCAGC
GCCGCCGCCGCCTCCACGGCGCCGTCCGCGCAGTCGCTCCTCTACTGGGGCAACGGCGGC
ATTGGCGCCGCCGCCGCGGCATGGCCGGACCTCGCCAACTGCGGATCCTCCATAGCGACG
CTCTTCTAGCTAGCCCAGCCTGCCGNGCGCGCCGCCTCCACGCCGCCGACTGTGCTAGCT
AGCTAGCTAGCTCGTCGCCGTTCGCCGTCGTCGTTAACTCTATTTTTTTTCCACCTTAAT
TTTCCCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1622#0      CCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACATGTAATTTGTGGGGAAAAAAA 60
consensus_1622#1      -----------------------------------------------------------C 1
                                                                                  

consensus_1622#0      AAGCTGAGATGAGAGAGAGAGCACACTGTGGAGAGAGATAGAGAGAAGAGAAGAGAAGAG 120
consensus_1622#1      GGCCGGTGAGCAGAGCTGGGAC---CTGCCGACGCCGTCGTCGTCCAACGTCGAGGCGAG 58
                         * * **  ****   *  *   ***  **    *     *   *  *  ***  ***

consensus_1622#0      ATCATCATCATCTCATAGGCAGAAAAATAGCTAGCTAGAGCAGCCAATTCAAC-AACCAA 179
consensus_1622#1      --CATCATCGCGTCGGACGCCGCTCA-----TGGCCGCCGCGGCCGCGTCGATGAACCCG 111
                        *******   **  * ** *   *     * **    ** ***   ** *  ****  

consensus_1622#0      ACGAAGAACCCAAAAAAAATTCCTGCAAGATTTCATCGCCGGTGGTCGATCAAGAAGGAG 239
consensus_1622#1      GCGGTCAGCGCCGCCGCCGCCTCCACGGCGCCGTCCGCGCAGTCGCTCCTCTACTGGGGC 171
                       **   * * *           *  *             * ** *    ** *   **  

consensus_1622#0      ATCAAGAACACAGATCGACTACCGACCGCGTTCTTCCTCGTCTCCGGCCGGTCGATGATC 299
consensus_1622#1      AACGGCGGCATTGGC--GCCGCCG-CCGCGGCATGGCCGGACCTCG-CCAACTGCGGATC 227
                      * *     **  *     *  *** *****   *  *  * *  ** **    *  ****

consensus_1622#0      TTGGAAAGGCGGCGGCGAGCGGAAGATCAATTTGGGATGCATTGATGAACAAGAAGGAAG 359
consensus_1622#1      CTCCATAG----CGACGCTCT-----TCTAGCTAGCCCAGCCTGCCGNGCGCGCCG---- 274
                       *  * **    ** **  *      ** *  * *       **  *  *  *  *    

consensus_1622#0      GAGAGATCAACAAAATCATGGGAGGAGAAGAGAAGCAAAGAAAGTGTAAGTGCACTAGCT 419
consensus_1622#1      -------CCTCCACGCCGCCGACTGTGCTAGCTAGCTA-GCTAGCTCGTCGCCGTTCGCC 326
                             *  * *   *   *   * *      *** * *  **        *  * ** 

consensus_1622#0      AGTGTTGCTACTACTTGATTTGCTAGCTAGCT-AGCTCTACTTGGCTTCTTGGCTTCTTG 478
consensus_1622#1      GTCGTCGTTA--ACTCTATTTTTTTTCCACCTTAATTTTCCCTGAG---TTAATTTCCCG 381
                         ** * **  ***  ****  *  * * ** *  * * * **     **   ***  *

consensus_1622#0      ATCTCCTTCCTTGGGTGGTATGTAGTAGCTTAT 511
consensus_1622#1      ATCT-----CTTGACTAAAAAATAACA------ 403
                      ****     ****  *   *  **  *