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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 1037 fasta sequence
[TTTTTTGCCAAACTTTTTTTTTTTTTGAC--AAAAAAAAATGACCAATTGGATCGATGCACA-GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA-TCAATCACACGGA-GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT-ACT-GGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGG-AGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGCCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCACGCCGGGGAACTGGCCGACGAAGGCCGGCGTCACGGCGGCCTTGATGAGGTTGCTGGTGTTGCCCGCCGCCGCGAGGCCGTGGTAGGCGAAGTCGCCGGCGCCGACGCTGGCCTTGCACGGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACGCAGAAATCCTG-CGTCAGCGCCATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTAC-GCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGTGTGTGTTGCGTAGTACACAGTGT]
[-] EMBL AU101827 [TTTTTTGCCAAACGAAGCTTTGAACTGAC AAAAAAAAATGACCAATTGGATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAAGTCAATCACACGGA G GACCACCACGACGACGACGACGGGGGGGGCGGCGACCcgaac ]
[-] EMBL AU091478 [ TTTTTTTTTTTTTGAC AAAAAAAAATGACCAATTGGATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTNGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACT GGTAGTGCAGGAGGCCCTGGGG ]
[-] EMBL AU198057 [ TTTTTTTTTTTTNGAC AAAAAAAAATGACCAATTGGATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAANAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCG ]
[-] EMBL AU076265 [ ttTTTTTTTTTTTTTGAC AAAAAAAATGACCAATTGGATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGG ]
[-] EMBL BI804981 [ TTTTTTTTTTGACAAAAAAAAAAATGACCAATGGGATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATGGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGAGGTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGTCACT GGTAGTG ]
[-] EMBL AU095802 [ TTTTTTTGAC AAAAAAAAATGACCAATTGGATCNATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCNACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGNTACCGCCGAGGANGGACTTGAGCNTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCG ]
[-] EMBL AU091473 [ TTTTTTGAC AAAAAAAAATGACCAATTGGATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACTGGGTAGTGCAGGAAGCCCTGNGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTNACGAACAGGAACTCGGNAGGC ]
[-] EMBL AF032975 [ aca AAAAAAAAATGACCAATTGGATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACT GGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGG AGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGCCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCACGCCGGGGAACTGGCCGACGAAGGCCGGGGTCACGGCGGCCTTGATGAGGTTGCTGGTGTTGCCCGCCGCCGCGAGGCCGTGGTAGGCGAAGTCGCCGGCGCCGACGCTGGCCTTGCACGGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACGCAGAAATCCTG CGTCAGCGCCATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTAC GCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGTGTGTGTTGCGTAGTACACAGTGT]
[-] EMBL AU076264 [ AAAAATGACCAATTGGATCGATGCACAGGTTTAGTCTTTCGTTCCAACAAATTNCAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGANCAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCNCGACGACGACGACGGCGNCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGG ]
[-] EMBL AF051156 [ tttttttTGACCAATTGGATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTTCGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACT GGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCTTGGGTGACGAACAGGAGCTCGG AGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGCCGACGGCGATGTCCAGCTTCGCCGCGGAGATACCGAGCCCGTTCAC ]
[-] EMBL AK065284 [ ATCGATGCACA GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACT GGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGG AGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGCCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCAC ]
[-] EMBL AB010876 [ TTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGTTAATCTGAAGCCCGGGGTTGGGGCCGCTGAAGCCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACT GGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGG AGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCCCCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCAC ]
[-] EMBL AK104729 [ CCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAA TCAATCACACGGA GTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACT GGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGG AGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGCCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCAC ]
[-] EMBL CB685867 [ TTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACT GGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGG AGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGCCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCAC ]
[-] EMBL OSS15627A [ CGTTNATCTGAAGCCCGGGNTTGGGGCCGCTGAAGCCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGT ACT GGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTNGG AGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCC CCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCAC ]
[-] EMBL OSS12833A [ CCGAGCCCGTTCACGCC GGGAACT GCCGANGAAGGCCGGCGTCACGGCGGCCNTGATGAGGTTGCTGTTGTTGCCCGCCGCCGCGAGGCCGTGGTAGGCGAAGTCGCCGGCGCCGANGCTGGCCTTGCACGGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACNCAGAAATCCTG CGTCAGCGCCATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTAC GCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGTGTGTGTTGCGTAGTACACAGTG ]
[-] EMBL OSS14368A [ CCNGTTCACGCCGGGGAACTGGCCGACGAAGGCNGGCGTCACGGNGGCCTTGATGAGGTTGCTGGTGTTGCCCGCCGCCGCGAGGCCGTGGTA GCGAAGTCGCCGGCGCCNACGCTGGCNTTGCACGGGTACCCCGCCGGCGTGTCGCTGCAGGTNAGGTCGGCGACGCAGAAATCCTG CGTCAGCGCNATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGNATCATCACTGCCTTGGCNATGGCTACCACACTAC GCANGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCT ]
[-] EMBL OSS11010A [ GGCCTTGATGAGGTTNCTGGTGTTGCCCNCCNCCGCNAGGCCNTGNTA GCGAAGTCGCCGGCTCCGANGCTGGCCTTGCAC GGTACCCCGCCGGCTTGTCGCTGCAGGTCAGGTCGNCGACNCAGAAATCCTG CGTCAGCTCCATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTAC GCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCT ]
[-] EMBL AU096508 [ GCCTTGATGAGGTTGCTGGTGTTGCCCGCCGCCGCGAGGCCGTGGTAGGCGAAGTCGCCGGCGCCGACGCTGGCCTTGCACGGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACGCAGAAATCCTGNANAAAGCGCCATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTACTGCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGT ]
[-] EMBL OSS11889A [ GCCTTGATGAGGTTGCTGGTGTTGCCCGCCGCCGCGAGGCCGTGGTAGGCGAAGTCGCCGGCGCCGANGCTGGCCTTGCACGGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACGCAGAAATCCTG CGTCAGCGCCATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTAC GCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGT ]
[-] EMBL CF325718 [ GCCTTGATGAGGTTGCTGGTGTTGCCCGCCGCCGCGAGGCCGTGGTAGGCGAAGTCGCCGGCGCCGACGCTGGCCTTGCACGGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACGCAGAAATCCTG CGTCAGCGCCATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTAC GCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGTGTGTGTTG ]
[-] EMBL AU198056 [ GCCTTGATGAGGTTGCTGGTGTTGCCCGCCGCCGCGAGGCCGTGGTAGGCGAAGTCGCCGGCGCCGACGCTGGCCTTGCACGGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACGCAGAAATCCTG CGTCAGCGCCATGGACGAGAATGGCAGCAGGAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTAC GCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCT ]
consensusID : consensus_16230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 681 fasta sequence
[AGCTTTGAACTGACAAAAAAAATGACCAATGGATCGATGCACAGTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGGGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCA-TGCAAATTAATCAATCACACGGA-GTGACCACGACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCAGTGATCTGGAGGCCGGGGTTGGGGCCG-CTGAAGGCGACGAG-CGCCACCGCCGCCGA-CT-GGCCGGCGTTGT-ACTGGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGGAGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGGCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCACG]
[+] EMBL CB966763 [AGCTTTGAACTGACAAAAAAAATGACCAATGGATCGATGCACAGTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGGGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCA TGCAAATTAATCAATCACACGGA GTGACCACGACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCAGTGATCTGGAGGCCGGGGTTGGGGCCG CTGAAGGCGACGAG CGCCACCGCCGCCGA CT GGCCGGCGTTGT ACTGGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGGAGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGGCGACGGCGATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCACG]
[-] EMBL BI810161 [ AATGGATCGATGCACAGTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGGGATTATTTGAACCACCACTTAATTAATCTGAAAGAAA TGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCAGTGCAAATTAATCAATCACACGGAGGTGACCACGACGACGACGACGACGGCGG GG GG GA CAA TCGACCGGAGAGAGACGTACGACGAACTTAACCGCTA CG CGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGA CTTCTCGACGATGGCGGACGGCAGGTTGTGGGCGACGAGGGCGTAGTCAGTGATCTGGAGGCCGGGGTTGGGGCCGCCTGAAGG GAGAAGCCGCCACCGCCGCCGACCTGGGACGGCG TGTCACTGGTAGTG AGGAGG CCTGGGGGAACACCATGATGTCG ]
consensusID : consensus_16230#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 613 fasta sequence
[TTTTTTTTTTTTTTTTTTTTGACCAATTGGATCGATGCACAGTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAATCAATCACACGGAGTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGTACTGGTAGTGCAGGAGGCCCT-GGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGANCTCGGAAGCGGCCGGGTGGGTG]
[-] EMBL AU091475 [TTTTTTTTTTTTTTTTTTTTGACCAATTGGATCGATGCACAGTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAATCAATCACACGGAGTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGTACTGGTAGTGCAGGAGGCCCT GGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGANCTCGGAAG ]
[+] EMBL CB685868 [ ttccTTTTTGTGACCAATTGGATCGATGCACAGTTTAGGCTTTCCCTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCACACACATTCCCATGACAGAAGTGCATGCATGCAAATTAATCAATCACACGGAGTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTACTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGTACTGGTAGTGCAGGAGGCCCT GGGGGAACACCATGATGTCGCCGGCGTACAGCGTCCTGGTGTACACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGTGACGAACAGGAGCTCGGAGGCGGCCGGGTGGGTG]
[-] EMBL BI804910 [ TTTTTTGACCAA TGGATCGATGCACAGTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAATCAATCACACGGAGTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCG CG CGACTGGCCGGCGTTGTACTGGTAGTGCAGGAGGCCCT GGGGGAACACCATGATGTCCGCGGCGTACAGCGTCCT ]
[-] EMBL AU095911 [ TTTTTGACCAATTGGATCGATGCACAGTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAATCAATCACACGGAGTGACCACCACGACGACGACGACNGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGTACTNGTAGTGCAGGANGCCCTGGGGGGAACACC ]
[+] EMBL CB637121 [ GATCGATGCACAGTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCACTTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCAGACACATTCCCATGACAGAAGTGCATGCATGCAAATTAATCAATCACACGGAGTGACCACCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGAACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAGGTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTANTCGGTGATCTGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCGTTGTACTGGTAGTGCAGGAGGCCCT GGGGGA ]
consensusID : consensus_16230#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[GGCATTNCAAACTCCCNCGAAATACGAGCCGTAACNCCGGAAANTGGCCGACGAAGCCGGCGTNACGCGGCTTGATNAGTTNCTGGTGTTCCCCCCGCCGCGAGCCGTGGTAGCGAAGTCGCCGNCGCCGACGCTGGCCTTGCCACGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACGCAGAAATCCTGCGTCAGCGCCATGGACGAGAATGGCAGCAGGAGNAAGGAGAGGAGGACGGGGAGCATCATNACTGCCTTGGCCATGGCTACCACACTACGCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGTGTGTGTTGCGTAGTAC]
[-] EMBL OSS11610A [GGCATTNCAAACTCCCNCGAAATACGAGCCGTAACNCCGGAAANTGGCCGACGAAGCCGGCGTNACGCGGCTTGATNAGTTNCTGGTGTTCCCCCCGCCGCGAGCCGTGGTAGCGAAGTCGCCGNCGCCGACGCTGGCCTTGCCACGGTACCCCGCCGGCGTGTCGCTGCAGGTCAGGTCGGCGACGCAGAAATCCTGCGTCAGCGCCATGGACGAGAATGGCAGCAGGAGNAAGGAGAGGAGGACGGGGAGCATCATNACTGCCTTGGCCATGGCTACCACACTACGCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGTGTGTGTTGCGTAGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16230#1 ---------------AGCTTTGAACTGACAAAAAAAA-TGACCAAT-GGATCGATGCACA 43
consensus_16230#2 ------------------TTTTTTTTTTTTTTTTTTT-TGACCAATTGGATCGATGCACA 41
consensus_16230#0 TTTTTTGCCAAACTTTTTTTTTTTTTGACAAAAAAAAATGACCAATTGGATCGATGCACA 60
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGGGATTATTTGAACCACCAC 103
consensus_16230#2 GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCAC 101
consensus_16230#0 GTTTAGTCTTTCGTTCCAACAAATTACAGTGACACACCTAGAGATTATTTGAACCACCAC 120
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 TTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCA 163
consensus_16230#2 TTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCA 161
consensus_16230#0 TTAATTAATCTGAAAGAAATTGACATGAACAAATTAAGCATAACATGAAAAAAGAAATCA 180
consensus_16230#3 -----------------------------------------------------GGCATTN 7
* **
consensus_16230#1 GACACATTCCCATGACAGAAGT-GCATGCATGCAAATTAATCAATCACACGGAGTGACCA 222
consensus_16230#2 GACACATTCCCATGACAGAAGT-GCATGCATGCAAATTAATCAATCACACGGAGTGACCA 220
consensus_16230#0 GACACATTCCCATGACAGAAGT-GCATGCATGCAAATTAATCAATCACACGGAGTGACCA 239
consensus_16230#3 CAAACTCCCNCGAAATACGAGCCGTAACNCCGGAAANTGGCCGA-----CGAAGCCGGCG 62
* ** * * * * ** * * * *** * * * ** ** *
consensus_16230#1 CGACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGA 282
consensus_16230#2 CCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGA 280
consensus_16230#0 CCACGACGACGACGACGGCGGCGGCGGCGACCAACTCGACCGGAGAGAGACGTACGACGA 299
consensus_16230#3 TNACG-CGGCTTGATNAGTTNC--TGGTGTTCCCCCCGCC----GCGAGCCGTGGTAGCG 115
*** ** * * * ** * * * ** * * *** *** *
consensus_16230#1 ACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAG 342
consensus_16230#2 ACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAG 340
consensus_16230#0 ACTTAACCGCTACCGCCGAGGACGGACTTGAGCTTCTTCACCTGCGCGTCGTCCAAGAAG 359
consensus_16230#3 AAGTCGCCGNCGCCGACGCTGGCCTTGCCACGGTACCCCGCCGGCGTGTCGCT---GCAG 172
* * *** *** ** * * * * * * ** *** **** * **
consensus_16230#1 GTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCAGTGATC 402
consensus_16230#2 GTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATC 400
consensus_16230#0 GTGACCTTCTCGACGATGGCGGACGGCAGGTTGTTGGCGAAGAGGGCGTAGTCGGTGATC 419
consensus_16230#3 GTCAGGTCGGCGACGCAGAAATCCTGC-----GTCAGCGCCATGGACGAGAATGGCAG-C 226
** * * ***** * * ** ** *** ** ** * *
consensus_16230#1 TGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCG 462
consensus_16230#2 TGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCG 460
consensus_16230#0 TGGAGGCCGGGGTTGGGGCCGCTGAAGGCGACGAGCGCCACCGCCGCCGACTGGCCGGCG 479
consensus_16230#3 AGGAGNAAGGAGAGGAGGACGGGGAGCATCATNACTGCCTTGGCCA-----TGGC---TA 278
**** ** * * ** ** ** * * *** *** ****
consensus_16230#1 TTGTACTGGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGT-CGCCGGCGTACAGCGT 521
consensus_16230#2 TTGTACTGGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGT-CGCCGGCGTACAGCGT 519
consensus_16230#0 TTGTACTGGTAGTGCAGGAGGCCCTGGGGGAACACCATGATGT-CGCCGGCGTACAGCGT 538
consensus_16230#3 CCACACTACGCACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGC 338
*** * * *** * * ** ** ***** ** * ** * *
consensus_16230#1 CCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGT 581
consensus_16230#2 CCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGT 579
consensus_16230#0 CCTGGTGTAGACGGTGTTGGAGGAGGAGGTGATGAACCCGGCGGCGACGGTGCCCTGGGT 598
consensus_16230#3 CTATGTGTGTGTTGCGTAGTAC-------------------------------------- 360
* **** * ** * *
consensus_16230#1 GACGAACAGGAGCTCGGAGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGGCGACGGC 641
consensus_16230#2 GACGAACAGGANCTCGGAAGCGGCCGGGTGGGTG-------------------------- 613
consensus_16230#0 GACGAACAGGAGCTCGGAGGCGGCCGGGTGGGTGTGGAGCGGCACGACGCCGCCGACGGC 658
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 GATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCACG-------------------- 681
consensus_16230#2 ------------------------------------------------------------
consensus_16230#0 GATGTCCAGCCTCGCCGCGGAGATACCGAGCCCGTTCACGCCGGGGAACTGGCCGACGAA 718
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 ------------------------------------------------------------
consensus_16230#2 ------------------------------------------------------------
consensus_16230#0 GGCCGGCGTCACGGCGGCCTTGATGAGGTTGCTGGTGTTGCCCGCCGCCGCGAGGCCGTG 778
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 ------------------------------------------------------------
consensus_16230#2 ------------------------------------------------------------
consensus_16230#0 GTAGGCGAAGTCGCCGGCGCCGACGCTGGCCTTGCACGGGTACCCCGCCGGCGTGTCGCT 838
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 ------------------------------------------------------------
consensus_16230#2 ------------------------------------------------------------
consensus_16230#0 GCAGGTCAGGTCGGCGACGCAGAAATCCTGCGTCAGCGCCATGGACGAGAATGGCAGCAG 898
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 ------------------------------------------------------------
consensus_16230#2 ------------------------------------------------------------
consensus_16230#0 GAGGAAGGAGAGGAGGACGGGGAGCATCATCACTGCCTTGGCCATGGCTACCACACTACG 958
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 ------------------------------------------------------------
consensus_16230#2 ------------------------------------------------------------
consensus_16230#0 CACGTACGAGCTCAAGCAAATTCAGCAAGATGTACGTGCACTAACTGTGCCTATGTGTGT 1018
consensus_16230#3 ------------------------------------------------------------
consensus_16230#1 -------------------
consensus_16230#2 -------------------
consensus_16230#0 GTTGCGTAGTACACAGTGT 1037
consensus_16230#3 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||