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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1144 fasta sequence
[TTAAATCTTTCCATTTCTTTTGGTTTCTTCAAAGATTTGTTTCCCCTTTTTTTAGACGTGTGCAAATAGTGTGCATAACTGTTCATTTTGCAAGAATTAATGGCCGGAGTTGGGGAAGAATGCGGCGAGGTGGCGGCGCTGCGGGAGGCTCTGCGGCAGCAGGCGGCGGCCGCGGAGGAGCTGAGGGGCGAGCTGGAGGAGGAGCGGCAGGCGGCGGCGTCGGGCGCCGACGAGGCGCTGGCGATGATCGTGCGGCTGCAGGCGGAGAAGGCGGCGGAGCGGATGGAGGCGGAGCAATTCCGGCGGGTGGCGGAGGAGAGGATCCAGCACGACGGTGACTCGCTGGCCTTCCTCAAGGCCGTCGTCTTCCACCAGGAGATGGAGATCAGCTCCCTCAACCGCCGCCTCCTCGCCGCCGGTGACGGCCGCGCCGCCGCCGCCCTGAGATCCACCAGGAGAGCTTCGCCGGAGATCATCTCCGAAGAAGAAGAAGACGACGACGACCACCTCATCTCCCGCCACGGCGAGAAGGCGCGAAAACCATGCAACTGCAGCGACCGCACCGCCATTGCTGGATTGGGCGCAGACATGGCGCAGATCAAGCTCAACCTACAAAGTCTTCACACCGAATTCATCAAAGCGAAGGAAGCCACCATCTCCAGAGGCGATTCGCAGGCGCGATTGCTCGCCGAGATCTGCGCGAAACTCGACGCGATCTCCAAAACGCGTCAGGATTCATCATCAGATGATCCTGTGCAGGTGAGAGTGAGCAGGGAAGAAGGCAGCTCATCCAAAGGGAGAAGCTACACAAATAGTGAGCTGCTGATGAACCATTTCATTGAGGTGAGTGCGATCATCTTCTCTACTCTGCTTGTTAGGCCCTTGCTCAAGGTTGCTGCATCCATGTCATTCTTTAGGTGCTTCTTGATATTGGTACTAGCTCTGGTGTTCAGAAAAGTTTTGATGAACTAGTGATGTGTACTAAGCACTAAGCAGTGGCATTCAGTGCTCAGGAGAATAGTTTTTTTTCATTTAATTTTGATTCCTTCAAATTTAGTCACTGATTGTAATAAGGCATATCTTGGGTGGGAAATGCTCAAACAAAACTTATCTTCATCAGCATTTTGGTTGTGAGGAAACGTTG]
[+] EMBL AK119946 [TTAAATCTTTCCATTTCTTTTGGTTTCTTCAAAGATTTGTTTCCCCTTTTTTTAGACGTGTGCAAATAGTGTGCATAACTGTTCATTTTGCAAGAATTAATGGCCGGAGTTGGGGAAGAATGCGGCGAGGTGGCGGCGCTGCGGGAGGCTCTGCGGCAGCAGGCGGCGGCCGCGGAGGAGCTGAGGGGCGAGCTGGAGGAGGAGCGGCAGGCGGCGGCGTCGGGCGCCGACGAGGCGCTGGCGATGATCGTGCGGCTGCAGGCGGAGAAGGCGGCGGAGCGGATGGAGGCGGAGCAATTCCGGCGGGTGGCGGAGGAGAGGATCCAGCACGACGGTGACTCGCTGGCCTTCCTCAAGGCCGTCGTCTTCCACCAGGAGATGGAGATCAGCTCCCTCAACCGCCGCCTCCTCGCCGCCGGTGACGGCCGCGCCGCCGCCGCCCTGAGATCCACCAGGAGAGCTTCGCCGGAGATCATCTCCGAAGAAGAAGAAGACGACGACGACCACCTCATCTCCCGCCACGGCGAGAAGGCGCGAAAACCATGCAACTGCAGCGACCGCACCGCCATTGCTGGATTGGGCGCAGACATGGCGCAGATCAAGCTCAACCTACAAAGTCTTCACACCGAATTCATCAAAGCGAAGGAAGCCACCATCTCCAGAGGCGATTCGCAGGCGCGATTGCTCGCCGAGATCTGCGCGAAACTCGACGCGATCTCCAAAACGCGTCAGGATTCATCATCAGATGATCCTGTGCAGGTGAGAGTGAGCAGGGAAGAAGGCAGCTCATCCAAAGGGAGAAGCTACACAAATAGTGAGCTGCTGATGAACCATTTCATTGAGGTGAGTGCGATCATCTTCTCTACTCTGCTTGTTAGGCCCTTGCTCAAGGTTGCTGCATCCATGTCATTCTTTAGGTGCTTCTTGATATTGGTACTAGCTCTGGTGTTCAGAAAAGTTTTGATGAACTAGTGATGTGTACTAAGCACTAAGCAGTGGCATTCAGTGCTCAGGAGAATAGTTTTTTTTCATTTAATTTTGATTCCTTCAAATTTAGTCACTGATTGTAATAAGGCATATCTTGGGTGGGAAATGCTCAAACAAAACTTATCTTCATCAGCATTTTGGTTGTGAGGAAACGTTG]
consensusID : consensus_1625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[CAGAGGACGAGACAAGGGGGGGTTGCTACAATTTTAAATCTTTCCATTTCTTTTGGTTNCTTNAAAGATTTGNTTCCCCTTTTTTTAGACGTGTGCAAATAGTGTGCATAACTGTTCATTTTGCAAGAATTAATGGCCGCCGCCGAGGCTGCACGAGGCGCTGGCGATGATCGTGCGGCTGCAGAAGAAGAAGACGACGACGACCACCTCATCTCCCGCCACGGCGAGAAGGCGCGAAAACCATGCAACTGCAGCGACCGCACCGCCATTGCTGAATTGGGCGCAGACATGGCGCAGATCAAGCTCAACCTACAAAGTCTTCACACCGAATTCATCAAAGCGAAGGAAGCCACCATCTCCAGAGGCGATTCGCAGGCGCGATTGCTCACCGAGATCTGCGCGAAACTCGACGCAATCTCCAAAACGCGTCAGGATTCATCATCAGATGATCCTGTGCAGGTGAGAGNGAGCAGGAAAGAAGGCAGCTCATCCAAAGGGAGAAGCTACACAAATAGTGAGCTGCTGATGAACCATTTCATTGAGGTGAGTGCGATCATCTTCTCTACTCTGCTTGTTAGGCCCTTGCTCAAGGTTGCTGCATCCATGTCATTCTTTAGGTGCTTCTTGATATTGGTACTAGCTCTGGTGNTCAGAAAAGTTTTGATGAACTAGNGATGTGTACTAAGCACTAAGCAGTGGCATTCAGTGCTCAGGANAATAGNTTTTTTTTNATTTAAATTTTGATTCCTTCAANTTANNCACTGNTTGTATAAGGCATATNTNGGNNGGNAAATGCTCAACAAACT]
[+] EMBL CA766969 [CAGAGGACGAGACAAGGGGGGGTTGCTACAATTTTAAATCTTTCCATTTCTTTTGGTTNCTTNAAAGATTTGNTTCCCCTTTTTTTAGACGTGTGCAAATAGTGTGCATAACTGTTCATTTTGCAAGAATTAATGGCCGCCGCCGAGGCTGCACGAGGCGCTGGCGATGATCGTGCGGCTGCAGAAGAAGAAGACGACGACGACCACCTCATCTCCCGCCACGGCGAGAAGGCGCGAAAACCATGCAACTGCAGCGACCGCACCGCCATTGCTGAATTGGGCGCAGACATGGCGCAGATCAAGCTCAACCTACAAAGTCTTCACACCGAATTCATCAAAGCGAAGGAAGCCACCATCTCCAGAGGCGATTCGCAGGCGCGATTGCTCACCGAGATCTGCGCGAAACTCGACGCAATCTCCAAAACGCGTCAGGATTCATCATCAGATGATCCTGTGCAGGTGAGAGNGAGCAGGAAAGAAGGCAGCTCATCCAAAGGGAGAAGCTACACAAATAGTGAGCTGCTGATGAACCATTTCATTGAGGTGAGTGCGATCATCTTCTCTACTCTGCTTGTTAGGCCCTTGCTCAAGGTTGCTGCATCCATGTCATTCTTTAGGTGCTTCTTGATATTGGTACTAGCTCTGGTGNTCAGAAAAGTTTTGATGAACTAGNGATGTGTACTAAGCACTAAGCAGTGGCATTCAGTGCTCAGGANAATAGNTTTTTTTTNATTTAAATTTTGATTCCTTCAANTTANNCACTGNTTGTATAAGGCATATNTNGGNNGGNAAATGCTCAACAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1625#0 TTAAATCTTTCCATTTCTTTTGGTTTCTTCAAAGATTTGTTTCCCCTTTTTTTAGACGTG 60
consensus_1625#1 ------------------------------------------------------------
consensus_1625#0 TGCAAATAGTGTGCATAACTGTTCATTTTGCAAGAATTAATGGCCGGAGTTGGGGAAGAA 120
consensus_1625#1 ------------------------------------------------------------
consensus_1625#0 TGCGGCGAGGTGGCGGCGCTGCGGGAGGCTCTGCGGCAGCAGGCGGCGGCCGCGGAGGAG 180
consensus_1625#1 ------------------------------------------------------------
consensus_1625#0 CTGAGGGGCGAGCTGGAGGAGGAGCGGCAGGCGGCGGCGTCGGGCGCCGACGAGGCGCTG 240
consensus_1625#1 ------------------------------------------------------------
consensus_1625#0 GCGATGATCGTGCGGCTGCAGGCGGAGAAGGCGGCGGAGCGGATGGAGGCGGAGCAATTC 300
consensus_1625#1 -------------------------------------------------CAGAGGA--CG 9
* *** *
consensus_1625#0 CGGCGGGTGGCGGAGGAGAGGATCCAGCACGACGGTGACTCGCTGGCCTTCCTCAAGGCC 360
consensus_1625#1 AGACAAGGGGGGGTTGCTACAATTTTAAATCTTTCCATTTCTTTTGGTTNCTTNAAAGAT 69
* * * ** ** * * ** * ** * * * * * ** *
consensus_1625#0 GTCGT----CTTCCACCAGGAGATGGAGATCAGCTCCCTCAACCGCCGCCTCCTCGCCGC 416
consensus_1625#1 TTGNTTCCCCTTTTTTTAGACGTGTGCAAATAGTGTGCATAACTGT--TCATTTTGCAAG 127
* * *** ** * * * ** * *** * * * **
consensus_1625#0 CGGTGACGGCCGCGCCGCCGCCGCCCTGAGATCCACCAGGAGAGCTTCGCCGGAGATCAT 476
consensus_1625#1 AATTAATGGCCGC--CGCCGAGGCTGCACGAGGCGCTGGCGATGATCGTGCGG------- 178
* * ****** ***** ** ** * * * * * ***
consensus_1625#0 CTCCGAAGAAGAAGAAGACGACGACGACCACCTCATCTCCCGCCACGGCGAGAAGGCGCG 536
consensus_1625#1 --CTGCAGAAGAAGAAGACGACGACGACCACCTCATCTCCCGCCACGGCGAGAAGGCGCG 236
* * ******************************************************
consensus_1625#0 AAAACCATGCAACTGCAGCGACCGCACCGCCATTGCTGGATTGGGCGCAGACATGGCGCA 596
consensus_1625#1 AAAACCATGCAACTGCAGCGACCGCACCGCCATTGCTGAATTGGGCGCAGACATGGCGCA 296
************************************** *********************
consensus_1625#0 GATCAAGCTCAACCTACAAAGTCTTCACACCGAATTCATCAAAGCGAAGGAAGCCACCAT 656
consensus_1625#1 GATCAAGCTCAACCTACAAAGTCTTCACACCGAATTCATCAAAGCGAAGGAAGCCACCAT 356
************************************************************
consensus_1625#0 CTCCAGAGGCGATTCGCAGGCGCGATTGCTCGCCGAGATCTGCGCGAAACTCGACGCGAT 716
consensus_1625#1 CTCCAGAGGCGATTCGCAGGCGCGATTGCTCACCGAGATCTGCGCGAAACTCGACGCAAT 416
******************************* ************************* **
consensus_1625#0 CTCCAAAACGCGTCAGGATTCATCATCAGATGATCCTGTGCAGGTGAGAGTGAGCAGGGA 776
consensus_1625#1 CTCCAAAACGCGTCAGGATTCATCATCAGATGATCCTGTGCAGGTGAGAGNGAGCAGGAA 476
************************************************** ******* *
consensus_1625#0 AGAAGGCAGCTCATCCAAAGGGAGAAGCTACACAAATAGTGAGCTGCTGATGAACCATTT 836
consensus_1625#1 AGAAGGCAGCTCATCCAAAGGGAGAAGCTACACAAATAGTGAGCTGCTGATGAACCATTT 536
************************************************************
consensus_1625#0 CATTGAGGTGAGTGCGATCATCTTCTCTACTCTGCTTGTTAGGCCCTTGCTCAAGGTTGC 896
consensus_1625#1 CATTGAGGTGAGTGCGATCATCTTCTCTACTCTGCTTGTTAGGCCCTTGCTCAAGGTTGC 596
************************************************************
consensus_1625#0 TGCATCCATGTCATTCTTTAGGTGCTTCTTGATATTGGTACTAGCTCTGGTGTTCAGAAA 956
consensus_1625#1 TGCATCCATGTCATTCTTTAGGTGCTTCTTGATATTGGTACTAGCTCTGGTGNTCAGAAA 656
**************************************************** *******
consensus_1625#0 AGTTTTGATGAACTAGTGATGTGTACTAAGCACTAAGCAGTGGCATTCAGTGCTCAGGAG 1016
consensus_1625#1 AGTTTTGATGAACTAGNGATGTGTACTAAGCACTAAGCAGTGGCATTCAGTGCTCAGGAN 716
**************** ******************************************
consensus_1625#0 AATAGTTTTTTTTCATTT--AATTTTGATTCCTTCAAATTTAGTCACTGATTGTAATAAG 1074
consensus_1625#1 AATAGNTTTTTTTTNATTTAAATTTTGATTCCTTCAANTT-ANNCACTGNTTGTA-TAAG 774
***** ******* ** ***************** ** * ***** ***** ****
consensus_1625#0 GCATATCTTGGGTGGGAAATGCTCAAACAAAACTTATCTTCATCAGCATTTTGGTTGTGA 1134
consensus_1625#1 GCATATNTNGGNNGGNAAATGCTCAAC--AAACT-------------------------- 806
****** * ** ** ********** *****
consensus_1625#0 GGAAACGTTG 1144
consensus_1625#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||