These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 840 fasta sequence [TGACTGGACTGAAGGAGTAGAAA--ACGCAGACACGAAAGCCCTAGCGACACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC-GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT-CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA-TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC-TTGGACT-GGTG-ATGGTGTCTTATTTGCTAGAA-TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGC-AGTTCAGTTTTCTCCCT-AGTCAC-TCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAAAGAGTATTATCAAAAAAAAGAAAAAA] [+] EMBL CF327594 [TGACTGGACTGAAGGAGTAGAAA AGACACGAAAGCCCTAGCGACACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACTGGGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTG ] [+] EMBL CF277920 [ CTGAAGGAGTAGAAA ACGCAGACACGAAAGCCCTAGCGACACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTCGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTG ] [+] EMBL CF314579 [ GAGTAGAAACCACGCAGACACGAAAGCCCTAGCGACACGCGAGCT CCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTG ] [+] EMBL CF279333 [ ACGAAAGCCCTAGCGACATTCGACCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTTTCGAAAATGAGCCAGGAGGTCGTGAACCCTAAG ] [+] EMBL CF338356 [ AAGCCCTAGCGACACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGA ] [+] EMBL CF295427 [ AAGCCCTAGCGACACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTGAATGGTGTCT ] [+] EMBL CF280677 [ CCCTAGCGACACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCCTTTTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGT ] [+] EMBL CF278987 [ gagtagaaaAGCGA TTGCGAGCTCCCCCAATCCTTCTCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGATTATCCTCGACCTCGTCCAGCTTGCCTCCAATTACAAGCAGCTTTTTATTGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA T ] [+] EMBL CF278992 [ ACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGGGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACAC ] [+] EMBL CA758727 [ GGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTACAA TTTTGTGTTTTTCAACTATGGCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGcc ] [+] EMBL AU164200 [ CTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAG ] [+] EMBL AU069238 [ CTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TNCAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGCTTTGGACT GGTG ATGGTGTCTTATTTGCTAGAATTTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGNTGTGTAATCCTTAAGATACATCTGTAGCATGGC AGTTCAGTTTTCTNCCTAAGTCAC TTCAAGCACTATTGT ] [-] EMBL AU163902 [ TCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCT CCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAAGTTCAGTTTTCTNCCT AGTCACTTCCAAGCACTATTGTAATGACTAATGATTTATGG ] [+] EMBL D42513 [ GCCAGGAGGTCGTGAACCCTAAGGCCTACCC GCTGGC GAC NNCA NTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGATGANGGCGGC ] [-] EMBL CF327595 [ GACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCTNCCACCT CCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGC AGTTCAGTTTTCTCCCT Aaaaaa ] [-] EMBL CF278993 [ CCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCTCCCACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGC AGTTCAGTTTTCTCCCT AGTCAC TCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAATGAGTATTATCAAAAAAAAGAAAAAA] [-] EMBL CF295428 [ GATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGC AGTTCAGTTTTCTCCCT AGTCAC TCCAAGCACTATTGTAATGACTAATGATTTATGAATGTTTGCTTGTGACACAaaaa ] [-] EMBL CF279332 [ GAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCCANTACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCACTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGC AGTTCAGTTTTCTCCCT AGTCAC TCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAAA ] [-] EMBL CF317039 [ GAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCGGCTGAAGACACCGA TACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGC AGTTCAGTTTTCTCCCT AGTCAC TCCAAGCACTATTGTAATGACTAATGATTTATGGACGTTTGCTTGTGACACACTTGCGAAAAAA ] [+] EMBL AU165301 [ AGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGC TTGGACT GGTG ATGGTGTCTTATTTGCTAGAA TTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGC AGTTCAGTTTTCTCCCT AGTCAC TCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAAAaaa ] consensusID : consensus_16254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGGTAAGCGACGCCTCTCTCCTCGCCCCCGATTCCTCCCTCCCTCGCTTGCTCTCGCCGACGCTGCTCGATTCGAGCATGACCGCCCGCCTGTTCGTTCGCTCGTTCTGGTTGCTGTGCAGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCCGCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGGTTTAATCCCCAGACAAAAATTGTCCCTCTTGTTTTTTTTTTTTTGTTTGGCTCCAGCGGTTTGATTTTCTTTTTGGGTGTGCCTATGCGCAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCTCCACCTCCCCCTGCTCGCGGAGGATAAGGTAGTATTTTTTTCCTTAACTTTTTTTTGGCCTTGCTATGTATATCATCTCTGCTTCCTATAGTTAGCGTTCTTATTAAAATTTTGGACCTTAAGACTTGGTATCTGGAGTAATCGAGTTGTTTGACTAGC] [+] EMBL BF430850 [CACGCGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGGTAAGCGACGCCTCTCTCCTCGCCCCCGATTCCTCCCTCCCTCGCTTGCTCTCGCCGACGCTGCTCGATTCGAGCATGACCGCCCGCCTGTTCGTTCGCTCGTTCTGGTTGCTGTGCAGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCCGCTGGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGGTTTAATCCCCAGACAAAAATTGTCCCTCTTGTTTTTTTTTTTTTGTTTGGCTCCAGCGGTTTGATTTTCTTTTTGGGTGTGCCTATGCGCAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCTCCACCTCCCCCTGCTCGCGGAGGATAAGGTAGTATTTTTTTCCTTAACTTTTTTTTGGCCTTGCTATGTATATCATCTCTGCTTCCTATAGTTAGCGTTCTTATTAAAATTTTGGACCTTAAGACTTGGTATCTGGAGTAATCGAGTTGTTTGACTAGC] consensusID : consensus_16254#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 507 fasta sequence [ATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCG-CGCATGTGGCGTTACT-AGACCTGTC-ATTGCTTGTT-CAGTGACC-AGCAACGAGGGCAGTC-AGCTG-AAGACACCGA-TA-CA-GAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAATTGGTCTTATCATCAGCTGGAGTTCATGGGCAGGTGTCCTTTGGAAAAAAAAAAAAAA] [+] EMBL BI796202 [ATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCG CGCATGTGGCGTTACT AGACCTGTC ATTGCTTGTT CAGTGACCAAGCAACGAGGGCAGTC AGCTG AAGACACCGA TA CA GAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTGCGAGAACCTTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAATTGGTCTTATCATCAGCTGGAGTTCATGGGCAGGTGTCCTTTGGAAAAAAAAAA ] [-] EMBL CF280676 [ GAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCG CGCATGTGGCGTTACT AGACCTGTC ATTGCTTGTT CAGTGACC AGCAACGAGGGCAGTC AGCTG AAGACACCGA TANCA GAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTTTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAATTGGTTTTATCATCAGCTGGAGTTCATGGGCAGGTGTCCTTTGGAAAAAAAAAAAAAA] [-] EMBL CF337607 [ GAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCG CGCATGTGGCGTTACT AGACCTGTC ATTGCTTGTT CAGTGACC AGCAACGAGGGCAGTC AGCTG AAGACACCGA TA CANGAATCTCAAGGATGCTATCGAGGAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGCGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAATTGGTCTTATCAaaaa ] [-] EMBL CF277921 [ CGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTCGGCCG CGCATGTGGCGTTACT AGACCTGTC ATTGCTTGTT CAGTGACC AGCAACGAGGGCAGTC AGCTG AAGACACCGANTA CA GAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAATTGGTCTTATCATCAGCTGGAGTTCAaaaaaaaaa ] [-] EMBL AU069044 [ ccTCGAAGCAAGCCCTTGGCCGCCGCATGTGNCGTTACT AGACCTGTC ATTGCTTGTT CAGTGACC AGCAACGAGGGCAGTC AGCTG AAGACACCGA TA CA GAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGANCGACACAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTNCGAGAACATTAAACCTATACATGCGATGTGCCATGTGNCCTATCTTTGTGACTGTTGTGTAANCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGAC ] [-] EMBL OSC987 [ gcCGTTACTAAGACCTGTCAATTGCTTGTTCCAGTGACCAAGCAACGAGGGCAGTCAAGCTGAAAGACACCGA TA CA GAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACAC ] [-] EMBL CF314578 [ ACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTGACACACTTGCGAAAAA ] consensusID : consensus_16254#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [GGTCAAGTGACCAGCAACGAGGGCAGTCAAGCTGAAAGACACCGGATACAGAATCNCAAGGATGCTATCGAGAAGCNCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATNATTTATGGATGTTTGCTTGTGACAAAAAAAAAAAAAAA] [+] EMBL C99597 [GGTCAAGTGACCAGCAACGAGGGCAGTCAAGCTGAAAGACACCGGATACAGAATCNCAAGGATGCTATCGAGAAGCNCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAAGTTTTTCAGAGGCTTGGACTGGTGATGGTGTCTTATTTGCTAGAATTTTGTGTTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACTCCAAGCACTATTGTAATGACTAATNATTTATGGATGTTTGCTTGTGACAAAAAAAAAAAAAAA] consensusID : consensus_16254#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [GGCCNCAGAGCGACANAGTTTTTCANAGGCTTGGACTGGTGATGGTGTCTTATTTGCTANAATTTTGTGNTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGNAGTTNAGTTTTCTCCCTAGTNACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTNANANACTTNCGAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97233 [GGCCNCAGAGCGACANAGTTTTTCANAGGCTTGGACTGGTGATGGTGTCTTATTTGCTANAATTTTGTGNTTTTCAACTATGTCTGCGAGAACATTAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTGTAATCCTTAAGATACATCTGTAGCATGGNAGTTNAGTTTTCTCCCTAGTNACTCCAAGCACTATTGTAATGACTAATGATTTATGGATGTTTGCTTGTNANANACTTNCGAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16254#2 ------------------------------------------------------------ consensus_16254#3 ------------------------------------------------------------ consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 TGACTGGACTGAAGGAGTAGAAAACGCAGACACGAAAGCCCTAGCGACACGCGAGCTCCC 60 consensus_16254#1 ------------------------------------------------------------ consensus_16254#2 ------------------------------------------------------------ consensus_16254#3 ------------------------------------------------------------ consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 CCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCGCGCGAGCTCCTCCAAGC 120 consensus_16254#1 ------------------------------------------------------------ consensus_16254#2 ------------------------------------------------------------ consensus_16254#3 ------------------------------------------------------------ consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 CGAGCCAACCCACCTCGCGAAAATGAGCCAGGAGGTCGTGAACCCTAAGGCCTACCCGCT 180 consensus_16254#1 ------------------------------------------------------------ consensus_16254#2 ------------------------------------------------------------ consensus_16254#3 ------------------------------------------------------------ consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 GGCGGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAA 240 consensus_16254#1 --------------------------------------------------------CACG 4 consensus_16254#2 ------------------------------------------------------------ consensus_16254#3 ------------------------------------------------------------ consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 GCAGCTCAAGAAGGGGGCCAACGAAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTT 300 consensus_16254#1 CGAGCTCCCCCAATCCTCCGCCGCGGCGGCCGCCTCCTCCTCCTCCTCCTCCTCCTCGCG 64 consensus_16254#2 ------------------------------------------------------------ consensus_16254#3 ------------------------------------------------------------ consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 CGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCTCCACCTCCCCCTGCTCGC 360 consensus_16254#1 CGAGCTCCTCCAAGCCGAGCCAACCCACCTCGCGAAAATGGTAAGCGACGCCTCTCTCCT 124 consensus_16254#2 -----ATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCC--CTTGGCCGCGCA 53 consensus_16254#3 ------------------------------------------------------------ consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 GGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCC--CTTGGCCGCGCA 418 consensus_16254#1 CGCCCCCGATTCCTCCCTCCCTCGCTTGCTCTCGCCGACGCTGCTCGATTCGAGCATGAC 184 consensus_16254#2 TGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCA-GCT 112 consensus_16254#3 ---------------------------GGTCAAGTGACCAGCAACGAGGGCAGTCAAGCT 33 consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 TGTGGCGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCA-GCT 477 consensus_16254#1 CGCCCGCCTGTTCGTTCGCTCGTTCTGGTTGCTGTGCAGAGCCAGGAGGTCGTGAACCCT 244 consensus_16254#2 GAA-GACACCG-ATACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACC 170 consensus_16254#3 GAAAGACACCGGATACAGAATCNCAAGGATGCTATCGAGAAGCNCCTCATTTGATTTACC 93 consensus_16254#4 ------------------------------------------------------------ consensus_16254#0 GAA-GACACCG-ATACAGAATCTCAAGGATGCTATCGAGAAGCTCCTCATTTGATTTACC 535 consensus_16254#1 AAGGCCTACCCGCTGGCGGA-CGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGC- 302 consensus_16254#2 AAGACCTTTCAGTGTGATGGGCCTCAGAG------CGACACA-GTTT--TTCAGAGGCTT 221 consensus_16254#3 AAGACCTTTCAGTGTGATGGGCCTCAGAG------CGACACAAGTTT--TTCAGAGGCTT 145 consensus_16254#4 -------------------GGCCNCAGAG------CGACANA-GTTT--TTCANAGGCTT 32 consensus_16254#0 AAGACCTTTCAGTGTGATGGGCCTCAGAG------CGACACA-GTTT--TTCAGAGGCTT 586 consensus_16254#1 -AGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACGAAGGTTTAATCCCCAGACAA 361 ** *** * ** * **** * * ** * consensus_16254#2 GGACTGGTGATGGTGTCTTATTTGCTAGAATT---TTGTGTTTTTCAACTATGTCTGCGA 278 consensus_16254#3 GGACTGGTGATGGTGTCTTATTTGCTAGAATT---TTGTGTTTTTCAACTATGTCTGCGA 202 consensus_16254#4 GGACTGGTGATGGTGTCTTATTTGCTANAATT---TTGTGNTTTTCAACTATGTCTGCGA 89 consensus_16254#0 GGACTGGTGATGGTGTCTTATTTGCTAGAATT---TTGTGTTTTTCAACTATGTCTGCGA 643 consensus_16254#1 AAATTGTCCCTCTTGTTTTTTTTTTTTTGTTTGGCTCCAGCGGTTTGATTTTCTTTTTGG 421 * ** * *** ** *** * ** * * ** * * * * * * consensus_16254#2 GAACAT-TAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTG-TA 336 consensus_16254#3 GAACAT-TAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTG-TA 260 consensus_16254#4 GAACAT-TAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTG-TA 147 consensus_16254#0 GAACAT-TAAACCTATACATGCGATGTGCCATGTGTCCTATCTTTGTGACTGTTGTG-TA 701 consensus_16254#1 GTGTGCCTATGCGCAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATG 481 * ** * * * * * * *** * * * ** *** * consensus_16254#2 ATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACT-----CCAA 391 consensus_16254#3 ATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACT-----CCAA 315 consensus_16254#4 ATCCTTAAGATACATCTGTAGCATGGNAGTTNAGTTTTCTCCCTAGTNACT-----CCAA 202 consensus_16254#0 ATCCTTAAGATACATCTGTAGCATGGCAGTTCAGTTTTCTCCCTAGTCACT-----CCAA 756 consensus_16254#1 GCGGCCGACACGGAGCCGCTCGAGATCCTTCTCCACCTCCCCCTGCTCGCGGAGGATAAG 541 * * * * * * * ** **** * * * consensus_16254#2 GCACTATTGTAATGACTAATGATTTATGGATGTT--TGCTTGTGACACACTTGCGAAAAA 449 consensus_16254#3 GCACTATTGTAATGACTAATNATTTATGGATGTT--TGCTTGTGACAAAAAAAAAAAAAA 373 consensus_16254#4 GCACTATTGTAATGACTAATGATTTATGGATGTT--TGCTTGTNANANACTTNCGAAAAA 260 consensus_16254#0 GCACTATTGTAATGACTAATGATTTATGGATGTT--TGCTTGTGACACACTTGCGAAAAA 814 consensus_16254#1 GTAGTATTTTTTTCCTTAACTTTTTTTTGGCCTTGCTATGTATATCATCTCTGCTTCCTA 601 * * **** * * *** *** * * ** * * * * * consensus_16254#2 TTGGTCTTATCATCAGCTGGAGTTCATGGGCAGGTGTCCTTTGGAAAAAAAAAAAAAA-- 507 consensus_16254#3 A----------------------------------------------------------- 374 consensus_16254#4 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 281 consensus_16254#0 AGAGTATTATCAAAAAAAAGAAAAAA---------------------------------- 840 consensus_16254#1 TAGTTAGCGTTCTTATTAAAATTTTGGACCTTAAGACTTGGTATCTGGAGTAATCGAGTT 661 consensus_16254#2 ----------- consensus_16254#3 ----------- consensus_16254#4 ----------- consensus_16254#0 ----------- consensus_16254#1 GTTTGACTAGC 672 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||