These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 881 fasta sequence [GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAATGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCGCGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGAGCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGCCGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGTTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGACCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGGCAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGTGATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAGAGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC] [+] EMBL AK068476 [GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAATGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCGCGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGAGCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGCCGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGTTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGACCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGGCAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGTGATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAGAGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC] consensusID : consensus_1626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGCCGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTCCGACCTCGCGCCCGGCCCGG] [+] EMBL CA753381 [GGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGCCGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTCCGACCTCGCGCCCGGCCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1626#0 GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAA 60 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 TGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCG 120 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 CGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGA 180 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 GCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGC 240 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 CGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGT 300 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 TCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGA 360 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 CCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGT 420 consensus_1626#1 -------------------------------------GGCGTTCGCCGCCATCAAGCAGT 23 *********************** consensus_1626#0 CCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCC 480 consensus_1626#1 CCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCC 83 ************************************************************ consensus_1626#0 CCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGT 540 consensus_1626#1 CCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGT 143 ************************************************************ consensus_1626#0 TCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGT 600 consensus_1626#1 TCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGT 203 ************************************************************ consensus_1626#0 CGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGT 660 consensus_1626#1 CGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGT 263 ************************************************************ consensus_1626#0 ACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGG 720 consensus_1626#1 ACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGC 323 ***************************************************** **** consensus_1626#0 CAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGT 780 consensus_1626#1 CGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTC-----CGACCTCGCGCCCGGCCCGG- 377 * ** * * ** * * ****** ** * *** *** ** consensus_1626#0 GATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAG 840 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 AGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC 881 consensus_1626#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||