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Oryza sativa
cluster # 1626 cluster # 1626       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1626#0 length = 881 sequences # 1  
consensus_1626#1 length = 377 sequences # 1  

consensusID : consensus_1626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 881
fasta sequence
                              [GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAATGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCGCGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGAGCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGCCGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGTTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGACCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGGCAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGTGATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAGAGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC]

[+] EMBL AK068476             [GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAATGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCGCGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGAGCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGCCGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGTTCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGACCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGGCAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGTGATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAGAGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC]


>consensus_1626#0 GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAA TGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCG CGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGA GCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGC CGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGT TCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGA CCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGT CCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCC CCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGT TCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGT CGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGT ACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGG CAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGT GATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAG AGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC



consensusID : consensus_1626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence
                              [GGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGCCGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTCCGACCTCGCGCCCGGCCCGG]

[+] EMBL CA753381             [GGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGCCGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTCCGACCTCGCGCCCGGCCCGG]


>consensus_1626#1 GGCGTTCGCCGCCATCAAGCAGTCCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGAC GCTGCTGCTGTACCACGCGTTCCCCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAG CGAGCTCAACCCGGTGAACACGTTCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGA CATGGGCACCATCTCCGTGCAGTCGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTA CGCCACGAGGCCCGTGGCGGTGTACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTT CAGCAAGGACCCGCCGCTGGCGCCGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTCCGA CCTCGCGCCCGGCCCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1626#0      GTTTTTATGATCAAGAAAATTCATCTTGCATTGATCACTGTACAATGTACATTGCTTAAA 60
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      TGATCTCAGTGATCAGGATCAGAGGAGAAGAGAAGATGGAGTTCAAAGCAGCCATGTTCG 120
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      CGGCCGCCGTCGTAGCCGTCCTCCTATCGTCGCCGTCACCGGCATTGGCTCAGAAGAAGA 180
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      GCCCGCCGGCGGCGCCGTCGCCGGTGTCGCTTCCACCGAGCTTGGCTCCGGCGCCGGCGC 240
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      CGGCGCCGCACTACGTCGACCTCGCCGAGCTCCTCAGCGTGGCCGGGCCGTTCCACACGT 300
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      TCCTCAACTACCTGGAGAAGACGAACGTCATCGAGACGTTCCAGAGCCAGGCGAACAAGA 360
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      CCAAGGAGGGCGTCACCATCTTCGTCCCCAAGGACTCGGCGTTCGCCGCCATCAAGCAGT 420
consensus_1626#1      -------------------------------------GGCGTTCGCCGCCATCAAGCAGT 23
                                                           ***********************

consensus_1626#0      CCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCC 480
consensus_1626#1      CCACCTTTTCCAACCTCACCGGCGACCAGCTCAAGACGCTGCTGCTGTACCACGCGTTCC 83
                      ************************************************************

consensus_1626#0      CCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGT 540
consensus_1626#1      CCAAGTTCTACTCCCTGGCCGAGTTCAAGAACCTCAGCGAGCTCAACCCGGTGAACACGT 143
                      ************************************************************

consensus_1626#0      TCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGT 600
consensus_1626#1      TCGCCGGCGCGCCGTACACGCTGAACCTCACCGACGACATGGGCACCATCTCCGTGCAGT 203
                      ************************************************************

consensus_1626#0      CGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGT 660
consensus_1626#1      CGATGTGGTCCAGGCCCAAGATCTCGAGCAGCGTGTACGCCACGAGGCCCGTGGCGGTGT 263
                      ************************************************************

consensus_1626#0      ACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGGCGGCGG 720
consensus_1626#1      ACGCGCTCAACAAGGTGCTCCTGCCCATGCAGATCTTCAGCAAGGACCCGCCGCTGGCGC 323
                      *****************************************************  **** 

consensus_1626#0      CAAGGCGGACTCGACGAGCGCCGCGTGCGGCGTCGGCGCCGGCGTCGTCAATGGCTTGGT 780
consensus_1626#1      CGGCGCCCGCCCCGGCGCCGGTGTCCGGGGCGTC-----CGACCTCGCGCCCGGCCCGG- 377
                      *   **   * *      **  *   * ******     ** * ***     ***  ** 

consensus_1626#0      GATGGCATTGGCTGGTAGCTTGATGCTCCTGTGGTGATGATCAGAGAGAGAGAGAGAGAG 840
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      AGAGTTCTTGGAGTCAAATTTGCAACAGCAGCACATTGTTC 881
consensus_1626#1      -----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)