These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 24 consensus length = 962 fasta sequence [CATGGACTGAGGAGTAGAAAAGGATCCAATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA-GGTGACGGCGAAGCA-GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG-CCGTACGACA-C-GGTGGCGCACCCC-TACGCACCGGGCGCC-TACGACAAGAAGGCCCCCG-CGGGGTACGTGCGCAACGTGGTGTCCGA-CCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGT-CCGCTACACCGCTGCCTTCAGCGACGAGAACCCCA-AC-G-CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAGTTGCAGATC-GGTTGTTTGAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF308180 [CATGGACTGAGGAGTAGAAAAGGATCCAATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATATACTGCGAAGGCTGTGAAAAGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACG CGGGAAGGTGATGCGGCGCGTGGCGTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA CGGGTGGCGCACCCC TACGCACCGGGCGCC ] [+] EMBL CF311609 [ GGATCCAATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGCC ] [+] EMBL CF307948 [ ATCCAATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGTGTGGCGTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGCC ] [+] EMBL CF317653 [ ATCCAATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAAGA ] [+] EMBL CF294819 [ ATCCAATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTANTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGA ] [+] EMBL AK121488 [ AATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGCC TACGACAAGAAGGCCCCCG CGGGGTACGTGCGCAACGTGGTGTCCGA CCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGT CCGCTACACCGCTGCCTTCAGCGACGAGAACCCCA AC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTG ] [+] EMBL CF310947 [ ATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAACGCCCTTGAGGACAT ] [+] EMBL CF305303 [ ATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGCACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAA ] [+] EMBL CF308361 [ ATCCACCTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTC ] [+] EMBL CF327712 [ ATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGA CGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGCC TACGACAAGAAGGCCCCCG CGGGGTACG ] [+] EMBL CF312462 [ ATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCNTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAGGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAGGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGC ] [+] EMBL CF307696 [ ATCCACTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCGAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGAC CCGGGAAGGTGATGCGGCGCGTGGCGT CAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGCC ] [+] EMBL C73796 [ GCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGANCTCGGTGGANGGTGACGGCGAA CAGGAACAAGGTNACGGTTACGGGGTACGTGGACGCCGGGAAAGTGATGCGGCG ] [+] EMBL CA754130 [ TTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGTCGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGCC TACGACAAGAAGGCCCCCG CGGGGTACGTGCGCAACGTGGTGTCCGA CCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGT CCGCTACACCGCTGCCTTCAGCGACGAGAACCCCA AC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAGTTGCAGATCGGGTTGTTTGAGCTTAAAAAAAAAA ] [+] EMBL AU069191 [ TGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGNGCGTGGCGT CAAGACCGGGAAGCGGGTGGAGCCATGGNCATACGTGCCCGTACGACACC GGTGGCGCACCCC TACGCACCGGGCGCCTTACNACAAGAAAGCCCCCGCCGGGGTACATGC CAA ] [+] EMBL CF279421 [ GATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGA GGTGACGGCGAAGCA GAACAAGGTGACGGTGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGCC TACGACAAGAAGGCCCCCG CGGGGTACGTGCGCAACGTGGTGTCCGA CCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGT CCGCTACACCGCTGCCTTCAGCGACGAGAACCCCA AC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCNCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAAT ] [-] EMBL CF294820 [ GTACAAGACCGGGAAGCGGGTGGAGCCATGGCCATACGTG CCGTACGACA C GGTGGCGCACCCC TACGCACCGGGCGCC TACGACAAGAAGGCCCCCG CGGGGTACGTGCGCAACGTGGTGTCCGA CCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGT CCGCTACACCGCTGCCTTCAGCGACGAGAACCCCA AC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGCGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTAAAATCTGCAAAGTTGCAaaaa ] [-] EMBL CF308181 [ GTGGCGCACCCCTTACGCACCGGGCGCC TACGACAAGAAGGCCCCCG CGGGGGACGTGCGCAACGTGGTGTCCGACCCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTNCCCCGAGG CCGCTAACCCGCTG CTTCAGCGACGAGAACCCCANAC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTTTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATTTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAGTTGCAGATC GGTTGTTTGAGCTTAAAAAAAA ] [-] EMBL CF307949 [ GCC TACGACAAGAAGGCCCCCG CGGGGTACGTGCGCAACGTGGTGTCCGA CCCCTCCGCCGCACCGTTCGCCCGCGCCTCCTCCACCGAGGT CCGCTACACCGCTG CTTCAGCGACGAGAACCCCA AC GCCCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTCCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAGTTGCAGATC GGTTGTTTGAGCTTAAAAAAAA ] [+] EMBL CF314595 [ GGGTACGTGCGCAACGTGGTGTCCGA CCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGT CCGCTACACCGCTACCTTCAGCGACGAGAACCCCA AC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTATTGTGTTACTATTGGACTCTC TTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAaaa ] [-] EMBL CF314596 [ GGGTACGTGCGCAACGTGGTGTCCGA CCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGT CCGCTACACCGCTACCTTCAGCGACGAGAACCCCA AC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTATTGTGTTACTATTGGACTCTC TTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAaaaa ] [+] EMBL AU082984 [ CTCCTCCACCGAGGT CCGCTACACCGCTGCCTTCAGCGACGAGAACCCCA ACGG CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCANATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGANATGAATCTTCAAATCTGCAAAGTTGCAGATC GGTTGTTTGAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF312463 [ CTCCACCGAGGTCCCGCTACACCGCTGCCTTCAGCGACGAGAACCCCA AC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTTTTTGCTTTAGATAGGGCGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTaaaaaaaaa ] [-] EMBL CF337111 [ AGCGACGAGAACCCCA AC G CCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCaaaaaa ] consensusID : consensus_16361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [GTACAAGACCGGGAAGCGGGTGAAGCCATGGCCATACGTGCCGTACGACACGGTGGCGCACCCCTACGCACCGGGCGCCTACGACAAGAAGGCCCCCGCGGGGTACGTGCGCAACGTGGTGTCCGACCCTTCCGCCGCACCGTTCGCCCGCGCCTCCTCCACCGAGGTCCGTTACACCGCTGCCTTCAGCGACGAGAACCCCAACGCCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTAAAAAAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGAAAAAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAGTTGCAAAAATTAAAAAAAAAAAAAAAACACAGTCATGCCGTTACGTAGCGTATC] [-] EMBL CF279422 [GTACAAGACCGGGAAGCGGGTGAAGCCATGGCCATACGTGCCGTACGACACGGTGGCGCACCCCTACGCACCGGGCGCCTACGACAAGAAGGCCCCCGCGGGGTACGTGCGCAACGTGGTGTCCGACCCTTCCGCCGCACCGTTCGCCCGCGCCTCCTCCACCGAGGTCCGTTACACCGCTGCCTTCAGCGACGAGAACCCCAACGCCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTAAAAAAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGAAAAAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAGTTGCAAAAATTAAAAAAAAAAAAAAAACACAGTCATGCCGTTACGTAGCGTATC] consensusID : consensus_16361#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 443 fasta sequence [GNGNANCGCGTGGGTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGC-TGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGAGGTGACGGCG-ANAGGAACAAAGGTGACGGTGACGGGGTACGTGGACGCCGNGAAGGTGATGCGGCGCGTTGCGTACAAAGACCGGGAAAGCGGGTTGAGCCATTGCATACGTGCCTACGACANGGTTGCGAC] [+] EMBL AU064275 [GNGNANCGCGTGGGTTGCATTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGC TGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGAGGTGACGGCG ANAGGAACAAAGGTGACGGTGACGGGGTACGTGGACGCCGNGAAGGTGATGCGGCGCGTTGCGTACAAAGACCGGGAAAGCGGGTTGAGCCATTGCATACGTGCCTACGACANGGTTGCGAC] [+] EMBL CK085254 [ TTTCAGCTCAGGAAGCCTCTGCTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTCGGAGATTGTGGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGC TGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGAGGTG ] [+] EMBL AU064295 [ CAGCTCAGGAAGCCTCTGCTACTTTGCTTGNCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTTGTGAAAGGAAGATCAAGAAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGAGGTNACGGCGAAGAGGAACAAAGGTGACGGTTACGGGGTAC ] consensusID : consensus_16361#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [AAGTGGTGTCCGACCCCTCCGCCGCACCGGTTGCCCGGGCCTCCTCCACCGAGGTCCGGTACACCGCTGCCTTCAGCGACGAGAACCCCAACGCCTGCTCCGTCGTGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCAGATGTAAAATACTTCATCATGTTCTTGTTTGGGGAAAAAAAAAAAAAAAAAA] [-] EMBL CF327713 [AAGTGGTGTCCGACCCCTCCGCCGCACCGGTTGCCCGGGCCTCCTCCACCGAGGTCCGGTACACCGCTGCCTTCAGCGACGAGAACCCCAACGCCTGCTCCGTCGTGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTTGTCCAGATTCGCCATCCCTCAAAAATCTTTCATAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCAGATGTAAAATACTTCATCATGTTCTTGTTTGGGGAAAAAAAAAAAAAAAAAA] consensusID : consensus_16361#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence [GCGCCTACGACAAGAAGGCCCCCGCGGGGTACGTGCGCAACGTGGTGTCCGACCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGTCCGCTACACCGCTGCCTTCAGCGACGAGAACCCCAACGCCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCGTCCAGATTCGCCATCCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094685 [GCGCCTACGACAAGAAGGCCCCCGCGGGGTACGTGCGCAACGTGGTGTCCGACCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGTCCGCTACACCGCTGCCTTCAGCGACGAGAACCCCAACGCCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCGTCCAGATTCGCCATCCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094673 [ AAGGCCCCCGCGGGGTACGTGCGCAACGTGGTGTCCGACCCCTCCGCCGCACCGCTCGCCCGCGCCTCCTCCACCGAGGTCCGCTACACCGCTGCCTTCAGCGACGAGAACCCCAACGCCTGCTCCGTCATGTAGCTAGCTGTGTGTCCCCGGGACGACGACGAAGCAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTCCAGATTCGCCATCCCTCAAAAATCTTTCGTCCAGATTCGCCATCCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_16361#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [CCGCTAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTAGCGGCCGCGAATTCGCGGCCGCTAGCGGC] [-] EMBL AU225419 [CCGCTAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTAGATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAAAATACTCCATCATGTTCTTGTTTAGCGGCCGCGAATTCGCGGCCGCTAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16361#3 ------------------------------------------------------------ consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 ------------------------------------------------------------ consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 CATGGACTGAGGAGTAGAAAAGGATCCAATCCACTTGCATTTCAGCTCAGGAAGCCTCTG 60 consensus_16361#2 ------------------------------------------------------------ consensus_16361#3 ------------------------------------------------------------ consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 ------------------------------------------------------------ consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 CTACTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTA 120 consensus_16361#2 ------------------------------------------------------------ consensus_16361#3 ------------------------------------------------------------ consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 ------------------------------------------------------------ consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 GTGAGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCT 180 consensus_16361#2 ------------------------------------------------------------ consensus_16361#3 ------------------------------------------------------------ consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 ------------------------------------------------------------ consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 CCGAGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGA 240 consensus_16361#2 ------------------------------------------------------------ consensus_16361#3 ------------------------------------------------------------ consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 ------------------------------------------------------------ consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 CAGTGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAAGAAGGCCC 300 consensus_16361#2 ------------------------------------------------------------ consensus_16361#3 ------------------------------------------------------------ consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 ------------------------------------------------------------ consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 TTGAGGACATGAAAGGGGTGAGCTCGGTGGAGGTGACGGCGAAGCAGAACAAGGTGACGG 360 consensus_16361#2 ------------------------------------------------------------ consensus_16361#3 ------------------------------------------------------------ consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 -------------------------------------------GTACAAGACCGGGAAGC 17 consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 TGACGGGGTACGTGGACGCCGGGAAGGTGATGCGGCGCGTGGCGTACAAGACCGGGAAGC 420 consensus_16361#2 ------------------------------------------------------------ consensus_16361#3 ------------------------------------------------------------ consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 GGGTGAAGCCATGGCCATACGTGCCGTACGACACGGTGGCGCACCCCTACGCACCGGGCG 77 consensus_16361#4 ---------------------------------------------------------GCG 3 consensus_16361#0 GGGTGGAGCCATGGCCATACGTGCCGTACGACACGGTGGCGCACCCCTACGCACCGGGCG 480 consensus_16361#2 ------------------------------------------------------------ consensus_16361#3 ------------------------------------AAGTGGTGTCCGACCCCTCCGCCG 24 consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 CCTACGACAAGAAGGCCCCCGCGGGGTACGTGCGCAACGTGGTGTCCGACCCTTCCGCCG 137 consensus_16361#4 CCTACGACAAGAAGGCCCCCGCGGGGTACGTGCGCAACGTGGTGTCCGACCCCTCCGCCG 63 consensus_16361#0 CCTACGACAAGAAGGCCCCCGCGGGGTACGTGCGCAACGTGGTGTCCGACCCCTCCGCCG 540 consensus_16361#2 -----------------GNGNANCGCGTGGGTTGCATTTCAGCTCAGGAAGCCTCTGCTA 43 consensus_16361#3 CACCGGTTGCCCGGGCCTCCTCCACCGA---GGTCCGGTACACCGCTGCCTTCAGCGACG 81 consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 CACCGTTCGCCCGCGCCTCCTCCACCGA---GGTCCGTTACACCGCTGCCTTCAGCGACG 194 consensus_16361#4 CACCGCTCGCCCGCGCCTCCTCCACCGA---GGTCCGCTACACCGCTGCCTTCAGCGACG 120 consensus_16361#0 CACCGCTCGCCCGCGCCTCCTCCACCGA---GGTCCGCTACACCGCTGCCTTCAGCGACG 597 consensus_16361#2 CTTTGCTTGGCCTGTACAGTAATACAGATAAAGACCTGCAGTTCTTTGGTCTCTTTAGTG 103 consensus_16361#3 AGAACCCCAACGCCTGCTCCGTCGTG--TAGCTAGCTGTGTGTCCCCGGGACGACGACGA 139 consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 AGAACCCCAACGCCTGCTCCGTCATG--TAGCTAGCTGTGTGTCCCCGGGACGACGACGA 252 consensus_16361#4 AGAACCCCAACGCCTGCTCCGTCATG--TAGCTAGCTGTGTGTCCCCGGGACGACGACGA 178 consensus_16361#0 AGAACCCCAACGCCTGCTCCGTCATG--TAGCTAGCTGTGTGTCCCCGGGACGACGACGA 655 consensus_16361#2 AGGACTGAGGAGTTTGGTTGGAGATTGTTGAGGAGATGGGCATCGTCGACGTTGTCTCCG 163 consensus_16361#3 AG--CAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTC 197 consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 AG--CAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTC 310 consensus_16361#4 AG--CAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTC 236 consensus_16361#0 AG--CAGCCTAGCAGGGTGTTTTTGTTGCCCCTTGCAGCTGTAATAATATTCTGTGTGTC 713 consensus_16361#2 AGTTCTGCTCCGTGCCGAGGACTCGCCGACACCTCAAGAAGAGGAAACAATTCCAGACAG 223 consensus_16361#3 CAGATTCGCCATCCCTCAAAAATCTTTTGTCCAGATTCGCCATCCCTCAAAAATCTTTCA 257 consensus_16361#5 ------------------------------------------------------------ consensus_16361#1 CAGATTCGCCATCCCTCAAAAATCTAAA-------------------------------A 339 consensus_16361#4 CAGATTCGCCATCCCTCAAAAATCTTTCGTCCAGATTCGCCATCCCTCAA---------A 287 consensus_16361#0 CAGATTCGCCATCCCTCAAAAATCTTTC-------------------------------A 742 consensus_16361#2 TGGAGATGAAGGTGCGGATAGACTGCGAAGGCTGTGAAAGGAAGATCAA----------G 273 consensus_16361#3 TAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTA 317 consensus_16361#5 -----------CCGCTAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTA 49 consensus_16361#1 AAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGAAAAAATGTTCTTTGCTTTA 399 consensus_16361#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------- 315 consensus_16361#0 TAGTATTATAGAAGGGAGGAAGTAGTAATTTTTCCAGCTGTAGTAATGTTCTTTGCTTTA 802 consensus_16361#2 AAGGCCCTTGAGGACATGAAAGGGGTGAGCTCGGTGGAGGTGACGGCGANAGGAACAAAG 333 ** * consensus_16361#3 GATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCAGATGTAA 377 consensus_16361#5 GATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAA 109 consensus_16361#1 GATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAA 459 consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 GATAGGGTGTTGTGTTACTATTGGACTCTCTTTTGCTTGTGCTTTTGGTTTCTGATGTAA 862 consensus_16361#2 GTGACGGTGACGGGGTAC--GTGGACGCCGNGAAGGTGATGCGGCGCGTTGCGTACAAAG 391 consensus_16361#3 AATACTTCATCATGTTCTTGTTTGGGGAAAAAAAAAAAAAAAAAA--------------- 422 consensus_16361#5 AATACTCCATCATGTTCTTGTTTAGCGGCCGCGAATTCGCGGCCGCTAGCGGC------- 162 consensus_16361#1 AATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAGTTGCAAAAA 519 consensus_16361#4 ------------------------------------------------------------ consensus_16361#0 AATACTCCATCATGTTCTTGTTTGGTGAGATGAATCTTCAAATCTGCAAAGTTGCAGATC 922 consensus_16361#2 ACCGGGAAAGCGGGTTGAGCCATTGCATACGTGCCTACGACANGGTTGCGAC-------- 443 consensus_16361#3 --------------------------------------------- consensus_16361#5 --------------------------------------------- consensus_16361#1 TTAAAAAAAAAAAAAAAACACAGTCATGCCGTTACGTAGCGTATC 564 consensus_16361#4 --------------------------------------------- consensus_16361#0 GGTTGTTTGAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAA----- 962 consensus_16361#2 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||