These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 816 fasta sequence [CGTATTCGCCCTTTGACTGGACTGAAGGAGTAGAAAAGCGGCGGGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAG-CTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG-AGCTCCTCCGGCG-AGAT-CCG-CC-TCTGACAGCCACCCT-CCCACGGCTGCTCGTCGTCC-T-CACCTCCGGCGA-CCGGCT-CAGGAAGAAAGTAACTT-GAG-CCATGGGAAA-GAGGAAGTC-AGCGGCTAAGCCACCACC-T-AAG-AAGAGGATGGA-CAAGCTTGA-TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT-GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA-TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAATTCTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF278935 [CGTATTCGCCCTTTGACTGGACTGAAGGAGTAGAAAAGCGGCGGGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAG CTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG AGCTCCTCCGGCG AGAT CCG CC TCTGACAGCCACCCT CCCACGGCTGCTTGTCGTCC T CACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGCAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCGGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCA ] [+] EMBL AU070510 [ CGGCGGGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAG CTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG AGCTCCTCCGGCG AGAT CCG CC TCTGACAGCCACCCT CCCACGGCTGCTCGTCGTCC T CACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TC ] [+] EMBL CK085269 [ GGGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAG CTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG AGCTCCTCCGGCG AGAT CCG CC TCTGACAGCCACCCT CCCACGGCTGCTCGTCGTCC T CACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAG ] [+] EMBL AU029271 [ CTCGAGNTTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGG AGCTCCTCCGGCG AGAT CCGCCC TCTGACAGCCACCTT CCCACGGCTGCTCGTCGTCC TCCACNTCCGGCGA CCGGCTCCAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAGAAAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAAaaaaa ] [+] EMBL AU085817 [ G CTCCCC NATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAAGCTCCTCCGGCGAAGAT CCG CC TCTGACAGCCACCCT CCCACGGCTGCTCGTCGTCC T CACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAAGCCACCACC T AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAATTTCTATGAAAAAAA ] [+] EMBL AU030031 [ GCCCCGGG AGCTTCTCCGGCG AGAT CCG CCTTCTGACNGCCACCNT CCCACGGCTGCTCGTCGTCC T NACCTCCGGCGA CCGGCT CAGGAAGAAAGTAACTTGGAG CCATGGGAAA GAGGAAGTC AGCGGCTNAGCCACCNCC T NAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATNTGAAGANCCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAATTCGNCATNTNTNGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGNCGGAGCATGNGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCNCCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCNCCTAAATAAACNCCTGAAGACGTGATGTTNTACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTNCCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCNTGGNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU095621 [ gnGATCCCG CCTTTTGACAGCCACCCTCCCCACGGNTGCTCGTCGTCCTT CACCTCCGGCGACCCGGCTCCAGGAAGAAAGTAACTT GAGCCCTTGGGAAAGGGGGAAGTC AGCCGNTAAGCCACCACCTT AAG AGAGGATGGA CAAGCTTGATTACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGA AAAA A AAAAATAAAAAA ] [+] EMBL C98394 [ CTCCGGNGACCCGGCT CAGGNAGAAAGTAACTT GAGCCCATGGNAAA GAGGAAGTCAAGCGNCTAAGCCACCACC TAAAG AAGAGGATGGACCAAGCTTGA TACTGTATTTTCNTGCCCATTCTGAAATNATGGCAGTAGTGTTGAATGCCGGATT GNTATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTNTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAANTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAA A AAAAAAAAA ] [-] EMBL CF334750 [ GCGA CCGGCT CAGGAAGAAAGTAACTT GAG CCATGGGAAA GAGGAAGTC AGCGGCTAGGCCACCACCNT AAG AAGAGGATGGA CAAGCTTGA TACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAA ] [+] EMBL AU057963 [ CGGATT GATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAA TCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAATTTCTATGAAAAAAAAAAAAANAAAAAgna ] [+] EMBL BI797961 [ TGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCATGAGCAACGCCAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTATCATC AAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGT CCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAATTTCTATGAAAAAAAAAA ] consensusID : consensus_16380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 793 fasta sequence [ACTGAAGGAGTAGTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA-GCGGCTAAGCCACCA-CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT-GGCAGTAGT-GTTGAATGCCGGATT-GATATGAAGAACCTGATCGGCG-AGGCTTC-ATGTA-GGATC-TGTCAGGAAAACTTCAGCACC-AC-TG-TCAA-TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC-AATGTCGAAGACGA-CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT-CCA-TGGATGAAATTTCTATGAATTCAAAGGCTACACTCCAAATTTGAGAAAAAAAAAAAAAAAAAA] [+] EMBL CF334749 [ACTGAAGGAGTAGAAAGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAGGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCG ] [+] EMBL AK120972 [ GTGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCGATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGGAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT CCA TGGATGAAATTTCTATGAATTCAAAGGCTACAC ] [+] EMBL AK061633 [ TGTGAACACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTC AGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTT ] [+] EMBL CF324808 [ CACCCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTG ] [+] EMBL C72405 [ CCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGANGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATNGGCAGTAGTGGTGGAATGCCGGATTNGATATGAAAGACCTGATGGGCGAAGGCTTCAATGTAGGGATCTTGTCAGGAAAACTTCAGGACCAACTTGTTNAATTGCAATGga ] [+] EMBL OSC31081 [ CATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCANCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCA ] [+] EMBL C28391 [ ATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGNCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC ACTTG TCAA TGCACTGACTGAACCAATCGACATATATAGCGGATGGATTTATGAGTGCGAGCGTGTCAAC AATGTCG AG CGANCGACGGAGC ] [+] EMBL AU065604 [ ATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGG AAACTTCAGCACC A TG TC A TGCA TGA TGGACCAATCGACATATATAGCG ATGGA TGATGA TGCGA CGTGTC AC ATGTCGAggga ] [+] EMBL C73974 [ ttnCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGNGACCGGNTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAG CACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGG TTC ATGTA GGATC TGTCAGG AAACTTCAGTACA NT TG TCAA TGCACTGACTGAACCAAT ] [+] EMBL AU071181 [ GCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCNCCGCCTGCCCCGGGAGCNCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGC ] [+] EMBL CB000074 [ GGCGAGATCCGCCTCTGACAGCCACCCTCCCACCGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT CCA TGGATGAAATTTCTATGAATTCAAAGGCTACACTCCAAATTTGAGAAAAAAAA ] [+] EMBL BI118736 [ GACAGCCACCCTCCCACGGCTGCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGGGCAACGCAAAATGCCTG ] [-] EMBL CF279223 [ GTAACTTGAGCCATGGGAAAGAGGAAGTCA GCGGCTAAGCCACCACCCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAAaa ] [+] EMBL BI806291 [ GAGGAAGTCACGCGGCTAAGCCACCA CCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCT CAATCAT GGCAGTAGT GTTGAATGCCGGATT GATATGAAGAACCTGATCGGCG AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACC ATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGC AAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTA GCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATC AAAACTC AAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGT CCTTACCTGGGATATTGTAACCGTAACTTTTCAAAa ] [+] EMBL OS1321740 [ AGGCTTC ATGTA GGATC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAG CGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTNCCATCAAAAACTCAAAAACAGTTATATGCGTNTGTAATTGTATGGGNCTAGTGCCTTACCTGGGGTATTGTAACCGTAct ] [+] EMBL CB683616 [ a cGACC TGTCAGGAAAACTTCAGCACC AC TG TCAA TGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAAC AATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT CCA TGGATGA ] [-] EMBL OS39589 [ AACAAATGTCGAAGACGA CGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTATCATNAAAAANNNAAANNNAGTTATATGCGTGTGTAATTGTAT GGCCTAGTG CTTAC ] [+] EMBL BI796850 [ AGCAACGCAAAATGCCTGATGTTGCCGTACCTGCACTGGTGCTATTGACTGCCACCTTCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTTTGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCGGCTTATCATCAAAAACTC AAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCCA TGGATGAAATTTCTATGAATTCAAAaa ] [+] EMBL BI800062 [ TAAATAAACACCTGAAGACGTGATGTTATACCGGCTTATCATCCAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCCTTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTT CCACTGGATGAAATTTCTATGAATTCAAAGGCTACACTCCAAATTTGAGAATGTTTTAAAAAAAAAA] consensusID : consensus_16380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGGAATAGTAGGAAGTCAGTCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGGTATGCGTTAGTGGTACACTGATTTTAGATTTCTCATTTCATTTAAAAATGGCAAGCAAGAGCATTGGATTTGTTATTGTTGGTTCCTTTCATGAAATGAACTGGTACCACCTTCGAGAACCAATTAGGTTAGCTTCTCATAGCCATGTCCTTTTAGTATTGTACTCTTTGCCTAGTCACTTTGTTTCAACCAACTGGAGATAATACAGCAGAACTAAGAGAGTAGACAGAATCTCTTGTAAAGATCAAATTGAGGATAAGAGAGGAAATTCAACTTGGAATCAGACTATTTATGGGTTTTATTTTTCAGTAAAA] [+] EMBL BI802781 [TCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGGAATAGTAGGAAGTCAGTCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGGTATGCGTTAGTGGTACACTGATTTTAGATTTCTCATTTCATTTAAAAATGGCAAGCAAGAGCATTGGATTTGTTATTGTTGGTTCCTTTCATGAAATGAACTGGTACCACCTTCGAGAACCAATTAGGTTAGCTTCTCATAGCCATGTCCTTTTAGTATTGTACTCTTTGCCTAGTCACTTTGTTTCAACCAACTGGAGATAATACAGCAGAACTAAGAGAGTAGACAGAATCTCTTGTAAAGATCAAATTGAGGATAAGAGAGGAAATTCAACTTGGAATCAGACTATTTATGGGTTTTATTTTTCAGTAAAA] consensusID : consensus_16380#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [GAAGGAGTAGAAAAAGCTTGACCGTTTGTTAGCGGCGGGTGTGAACACTCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCTTTCTCACCTCCGGCGACCGGTTTAGGAAGAAAGTAACTTGAGCTTTGTTAAAGAGGAAGTCAGCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCA] [+] EMBL CF279224 [GAAGGAGTAGAAAAAGCTTGACCGTTTGTTAGCGGCGGGTGTGAACACTCTCCATTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCTCCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCTGCTCGTCTTTCTCACCTCCGGCGACCGGTTTAGGAAGAAAGTAACTTGAGCTTTGTTAAAGAGGAAGTCAGCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTGTATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGAACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATGCACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACAATGTCGAAGACGACGACGGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16380#0 CGTATTCGCCCTTTGACTGGACTGAAGGAGTAGAAAAGCGGCGGGTGTGAACACCCTCCA 60 consensus_16380#1 --------------------ACTGAAGGAGTAG------------TGTGAACACCCTCCA 28 consensus_16380#3 -----GAAGGAGTAGAAAAAGCTTGACCGTTTGTTA-GCGGCGGGTGTGAACACTCTCCA 54 consensus_16380#2 ------------------------------------------------------------ consensus_16380#0 TTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCT 120 consensus_16380#1 TTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCT 88 consensus_16380#3 TTTTTTCCCCCCAATCCCTTCCGACGCGCTCTCGAGCTCCCCGCATTCCCCGTCTCCCCT 114 consensus_16380#2 ------------------------------------------------------------ consensus_16380#0 CCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCT 180 consensus_16380#1 CCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCT 148 consensus_16380#3 CCGCCTGCCCCGGGAGCTCCTCCGGCGAGATCCGCCTCTGACAGCCACCCTCCCACGGCT 174 consensus_16380#2 ------------------------------------------------------------ consensus_16380#0 GCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAA 240 consensus_16380#1 GCTCGTCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGAAA 208 consensus_16380#3 GCTCGTCTTTCTCACCTCCGGCGACCGGTTTAGGAAGAAAGTAACTTGAGCTTTGTTAAA 234 consensus_16380#2 -----TCGTCCTCACCTCCGGCGACCGGCTCAGGAAGAAAGTAACTTGAGCCATGGGGAA 55 ** * ****************** * ******************** ** ** consensus_16380#0 GAG---GAAGTCAG-CGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTG 296 consensus_16380#1 GAG---GAAGTCAG-CGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTG 264 consensus_16380#3 GAG---GAAGTCAG-CGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTG 290 consensus_16380#2 TAGTAGGAAGTCAGTCGGCTAAGCCACCACCTAAGAAGAGGATGGACAAGCTTGATACTG 115 ** ******** ********************************************* consensus_16380#0 TATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGA 356 consensus_16380#1 TATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGA 324 consensus_16380#3 TATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGA 350 consensus_16380#2 TATTTTCCTGCCCATTCTGCAATCATGGCAGTAGTGTTGAATGCCGGATTGATATGAAGA 175 ************************************************************ consensus_16380#0 ACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATG 416 consensus_16380#1 ACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATG 384 consensus_16380#3 ACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATG 410 consensus_16380#2 ACCTGATCGGCGAGGCTTCATGTAGGATCTGTCAGGAAAACTTCAGCACCACTGTCAATG 235 ************************************************************ consensus_16380#0 CACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACA 476 consensus_16380#1 CACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACA 444 consensus_16380#3 CACTGACTGAACCAATCGACATATATAGCGAATGGATTGATGAGTGCGAGCGTGTCAACA 470 consensus_16380#2 ----GTATGCGTTAGTGG---TACACTGATTTTAGATTTCTCATTTCA-----TTTAAAA 283 * ** * * * ** * * * **** * * * * * ** * consensus_16380#0 ATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCA 536 consensus_16380#1 ATGTCGAAGACGACGACGGAGCATGAGCAACGCAAAATGCCTGATGTTGCCGTACCTGCA 504 consensus_16380#3 ATGTCGAAGACGACGACGGAGCA------------------------------------- 493 consensus_16380#2 ATGGCAAGCAAGAGCATTGGATTTGT-TATTGTTGGTTCC------TTTCATGAAATGAA 336 *** * * * ** * * consensus_16380#0 CTGGTGCTATTGACTGCCACCT-TCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTT 595 consensus_16380#1 CTGGTGCTATTGACTGCCACCT-TCAGCCACGTCTGTAATAGTGTAATGGCTGATTGGTT 563 consensus_16380#3 ------------------------------------------------------------ consensus_16380#2 CTGGTACCACCTTCGAGAACCAATTAGGTTAGCTTCTCATAGCC--ATGTCCTTTTAGTA 394 consensus_16380#0 TGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCG 655 consensus_16380#1 TGTTAGTAGGCAGTTCATTCCCGCACCTAAATAAACACCTGAAGACGTGATGTTATACCG 623 consensus_16380#3 ------------------------------------------------------------ consensus_16380#2 TTGTACTCTTTGCCTAGTCACTTTGTTTCAACCAACTGGAGATAATACAGCAGAACTAAG 454 consensus_16380#0 GCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCC 715 consensus_16380#1 GCTTCCCATCAAAAACTCAAAAACAGTTATATGCGTGTGTAATTGTATGGGCCTAGTGCC 683 consensus_16380#3 ------------------------------------------------------------ consensus_16380#2 AGAGTAGA-CAGAATCTCTTGTAAAGATCAAATTGAGGATAAGAGAGGAAATTCAACTTG 513 consensus_16380#0 TTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAAATTC 775 consensus_16380#1 TTACCTGGGATATTGTAACCGTAACTTTTCAAATCAGCATGTTTCCATGGATGAAATTTC 743 consensus_16380#3 ------------------------------------------------------------ consensus_16380#2 GAATCAGACTATTTATGGGTTTTATTTTTCAGTAAAA----------------------- 550 consensus_16380#0 TATGAAAAAAAAAA---------AAAAAAAAAAAAAAAAAAAAAAAAAAA 816 consensus_16380#1 TATGAATTCAAAGGCTACACTCCAAATTTGAGAAAAAAAAAAAAAAAAAA 793 consensus_16380#3 -------------------------------------------------- consensus_16380#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||