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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 642 fasta sequence
[CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT-CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC-CTGCCACGTCCCCGTCCC-CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC-TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTG---T-A--TTGG-------TGTATGTA----TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAAAAATATATAATAATTTATAACCCTA]
[+] EMBL BE040812 [CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCACGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTAGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGGATTGAGTTTGGA TGTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAA ]
[+] EMBL OSR11901A [ TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGANGGTGGNGTTGGNGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGG ]
[+] EMBL OSR11921A [ TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGG ]
[+] EMBL OSR11841A [ TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGNGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGng ]
[+] EMBL BE040980 [ TTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTG T A TTGGGTTTGGATGTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGGTTAAAAAAAAACAATTTATATAATAATTTATAACCCTA]
[+] EMBL AU031466 [ CTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTTCCCGTCCGGCGTCNTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG T A TTGG GTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCNGTTGTNCGAAAAAAAAAAAAAAAAAAAAaa ]
[+] EMBL BE040224 [ TGAAGAAGCAGCAGCCGTGCCTGTGCCANTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGGGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCGATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGGTATACTGCTCTG T A TTGGGTT TGTATGTATGAGTGTATGTATGAATAAATAAGGCCAGAAATGCAGTTGTACGAGGTTAAAAAAAAAAAAAAA ]
[+] EMBL AU162152 [ GGCAAGAAGGTCTTGGCCGCNCTGCCAAGTCCCCGTCCCANTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG T A TTGG GTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAA ]
[+] EMBL AU164766 [ CAGTTCTGTGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGNATGGCCCACCTTGNCATAGACGCCGTCTATATATNGACGTACGTACGTGTCTCGCTTACTTGATTNCGTGTCTGCTTCGNCGAGTTNGATNGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG T A TTGG GTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCNGTTGTNCGAAAAAAAANNAAAAAA ]
consensusID : consensus_16390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 639 fasta sequence
[GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG-TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC-GTTGGC-GGTGGC-GGCGATGGC-GGTG-CTGCTGCTGCTCGCGGCGGC-GGCGGCGCC-GGGGGCGGA-GGCGGCGTGCGAC-GCGCTGCAGCTG-TCG-CCGTGCGC-GAGCGCGATCATCG-GG-AACGCGTCGCC-GTCGGCGTCG-TGCTGCAGC-CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG-CGACCCAAACCTGCAGCGC-TACGTCAA-CTCCCCCAACGG-CAAGAAGGT-CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA]
[+] EMBL CB964855 [GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTGCCTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAACTAACGCCAGAAAT ]
[+] EMBL AK062463 [ tagctagCAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTT ]
[+] EMBL AU183921 [ AATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCC ]
[+] EMBL CB966380 [ TCCTATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAAT ]
[+] EMBL AU164855 [ TCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCN GGNGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGNTTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCNCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCG ]
[+] EMBL AU183882 [ CCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCAGTTGGCAGGTGGCAGGCGATGGCAGGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGG ]
[+] EMBL CB965134 [ ATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCCGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAAT ]
[+] EMBL CA754776 [ ACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGA ]
[+] EMBL BU673113 [ cAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGCGGGCGGCGCCGGGGGGCGGAGGGCGGCGTGCGACAGCGCTGCAGCTGATCGACCGTGCGCAGAGCGCGATCATCG GGAAACGCGTCGCCTGTCGGCGTCGATGCTGCAGCGCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGNCGACCC ]
[+] EMBL AU198241 [ AATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCT ]
[-] EMBL CB966353 [ TGGTTCCTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGCC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGCCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTATGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGC ]
[-] EMBL CB967058 [ GTTCTTGATCATTGTTATCTAAGTTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGCC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG ]
[+] EMBL AU101556 [ TTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCN GGAGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGG NTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCANTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CA ]
[-] EMBL CB966148 [ GAAGGGCCATGGCGAAGGTGGC GTTGTC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAAT AAGCCAGAAA ]
[-] EMBL BU673587 [ GAAGGTCCATGGCGAAGGTGGC GTTGTC GGTGGC GGCGATGTC GGTG CTGCTGCTGCTCGCGTCGTC GGCGGCGCC GGGGGCGGA GTCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGT TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAA ]
[+] EMBL AU101557 [ C GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTTCCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA]
[-] EMBL CB965424 [ GCGCTGCAGCTG TCT CCGTGCTC GAGCGCGTTCTTCGTGG TACGCCTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGATCTTCATCCGTGCCTGTGCCAGTACGCGCT CGACCCATACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG ]
[-] EMBL CB967002 [ GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCACCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG ]
[+] EMBL AU162073 [ CGCTTACGTCAANCTCCCCCAACGGNCAAGAAGGTCCNTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTAaaa ]
[-] EMBL BU673504 [ CGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG ]
consensusID : consensus_16390#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[AGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTNAGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTTTCTCGCTTACTTGAT]
[+] EMBL OSS15842A [AGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTNAGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTTTCTCGCTTACTTGAT]
consensusID : consensus_16390#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence
[ANCCAAACCATAATACTCCAGTTNTGCGTGCCGTTTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATATGGACGTACNTACGTGTCTCGCTTACTTGATTTCGTGTCTGTTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA]
[+] EMBL AU091439 [ANCCAAACCATAATACTCCAGTTNTGCGTGCCGTTTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATATGGACGTACNTACGTGTCTCGCTTACTTGATTTCGTGTCTGTTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA]
consensusID : consensus_16390#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence
[TAGGACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAGACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATCCAGTTGTACGAGGT]
[-] EMBL CB964911 [TAGGACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAGACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATCCAGTTGTACGAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16390#3 ------------------------------------------------------------
consensus_16390#4 ------------------------------------------------------------
consensus_16390#0 ------------------------CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTG 36
consensus_16390#1 GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTG 60
consensus_16390#2 ------------------------------------------------------------
consensus_16390#3 ------------------------------------------------------------
consensus_16390#4 ------------------------------------------------------------
consensus_16390#0 ATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGG 96
consensus_16390#1 ATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGG 120
consensus_16390#2 ------------------------------------------------------------
consensus_16390#3 ------------------------------------------------------------
consensus_16390#4 ------------------------------------------------------------
consensus_16390#0 CGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGG 156
consensus_16390#1 CGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGG 180
consensus_16390#2 ------------------------------------------------------------
consensus_16390#3 ------------------------------------------------------------
consensus_16390#4 ------------------------------------------------------------
consensus_16390#0 CGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGC 216
consensus_16390#1 CGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGC 240
consensus_16390#2 ------------------------------------------------------------
consensus_16390#3 ------------------------------------------------------------
consensus_16390#4 ------------------------------------------------------------
consensus_16390#0 CGTCGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGC 276
consensus_16390#1 CGTCGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGC 300
consensus_16390#2 ------------------------------------------------------------
consensus_16390#3 ------------------------------------------------------------
consensus_16390#4 ------------------------------------------------------------
consensus_16390#0 GCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCT 336
consensus_16390#1 GCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCT 360
consensus_16390#2 ---------------------------------------------------AGCAATAAC 9
consensus_16390#3 --------------------------ANCCAAACCATAATACTCCAGTTNTGCGTGCCGT 34
consensus_16390#4 ------------------------------------------------------------
consensus_16390#0 GCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGT 396
consensus_16390#1 GCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGT 420
consensus_16390#2 TGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGC 69
consensus_16390#3 TTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATAT 94
consensus_16390#4 ---------------------------------------------------------TAG 3
consensus_16390#0 TTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATAT 456
consensus_16390#1 TTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATAT 480
consensus_16390#2 TGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGC 129
*
consensus_16390#3 GGACGTACNTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGT-TTCGACGAGTTCGAT 150
consensus_16390#4 GACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAG 63
consensus_16390#0 GGACGTACGTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGC-TTCGACGAGTTCGAT 512
consensus_16390#1 GGACGTACGTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGC-TTCGACGAGTTCGAT 536
consensus_16390#2 AGCGCTACGTCAACTCCCC-CAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTC 188
*** * * * * * ** ** ** * * * * *** **
consensus_16390#3 -CGTGCCGTGTATTGCGTAC-GGTTATCCTGCTCTGTA-TTGGGTATGTATGTATGTATG 207
consensus_16390#4 ACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATG 123
consensus_16390#0 -CGTGCCGTGTATTGCGTAC-GGTTATACTGCTCTGTATTGGTGTATGTATGTATGTATG 570
consensus_16390#1 -CGTGCCGTGTATTGCGTAC-GGTTATACTGCTCTGTA-TTGGGTATGTATGTATGTATG 593
consensus_16390#2 CCCTCCTGCTAAAACCAAAC-CATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTN 247
* * * * * * ** * ** ** * * * *** *** *
consensus_16390#3 AATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA----------------------- 244
consensus_16390#4 AATAAATAAAGCCAGAAATCCAGTTGTACGAGGT-------------------------- 157
consensus_16390#0 AATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAAAAATATATAATAA 630
consensus_16390#1 AATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA-------------- 639
consensus_16390#2 AGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACG 307
* * * * *
consensus_16390#3 -----------------
consensus_16390#4 -----------------
consensus_16390#0 TTTATAACCCTA----- 642
consensus_16390#1 -----------------
consensus_16390#2 TTTCTCGCTTACTTGAT 324
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||