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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 714 fasta sequence
[ATCGATCTTAATTTCTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA-CGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCGTC-GCG-CCGCCGT-CGGGGCTGGCGCTGACG-CGCCCTCGGGGTTGGCGCCGGCGCCGCC-GGCGCCGCCGGG-GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG-TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTATGGGTGGATCAAAAAATACTCCCCCCGTCCCAAAAA]
[+] EMBL AK109576 [ATCGATCTTAATTTCTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTAGCGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCCGGCGTCGGCG CCGCCGT CGGGGCTGGCGCTGACGCCGCCCTCGGGGTTGGCGCCGGCGCCGCC GGCGCCGCCGGG GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTA ]
[+] EMBL C72273 [ TTTCTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA NGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCGTC GCG CCGCCGT CGGGGCTGGCGCTGACG CGNCCTCGGGGTTGGCGCCGGCGCCGCN GGCACCG GGG GCTGGAGTTGGAGCTGGAATTTGAGCCGCCGCCAACGT ]
[+] EMBL C73304 [ TTCTNATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATNAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA NGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCTTC GNG CCGCCNT CGGGGCTGGCGCTGACG CGCCC ]
[+] EMBL C73301 [ CTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGGCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA GGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTTAGNGTC GCG CCGCCGT CGGGGCTGGCGCTGACG CGNCCTCGGGGTTGGCGCCGNCGCCG ]
[+] EMBL C98711 [ TCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCNGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA CGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTNGGCGTC GCG CCGCCGT CGGGGCTGGCGCTGACG CGCCCTCGGGGTTGGCGCCGGCG CGCCNGGCNCGG GGG GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCC ]
[+] EMBL C72831 [ ATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCNGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA CGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTGAGCGTC GCG CCGCCGT CGGGGCTGGCGCTGACG CGCCCTCGGGGTTGGCGCCGGCGCCGCC GNGACACNGGGNGCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCGTTGGCAACCAAGGTGCATTTGTNAGATCG ]
[+] EMBL AU069832 [ TCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA GGCCCACGTCGGGGTTGGGGCTGGGGCTGG ]
[+] EMBL C73363 [ CTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA GNCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCCGGCNTC GCGNCCGCCGTNCGGGGCTGGCGCTNACG CGCCTTCGGGGTTGGng ]
[+] EMBL C73278 [ CTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA NGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCNTC GCG CCGCCGT CGGGGCTGGCGCTAACG CGCCCTCGGGGTTGGNGC ]
[+] EMBL AU094200 [ TCCTCNCCGCCGTGGTGGT GCCGGCGNCGCTGGCGCTAGCGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCCGGCGTCGGCG CCGCCGT CGGGGCTGGCGCTGACGCCGCCCTCGGGGTTGGCGCCGGCGCCGCC GGCGCCGCCGGG GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTATGGGTGGATCAAAAAA ]
[+] EMBL AU182548 [ CGCCGT CGGGGCTGGCGCTGACGCCGCCTTCGGGGTTGGCGCCGGCGCCGCC GGCGCCGCCGGG GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATAaaaaa ]
[+] EMBL AU094238 [ GCCNT CGGGGCTGGCGCTGACGCCGCCCTNGGGGTTGGCGCCGGCGCCGCC GGCNCCGCCGGG GCTGNAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCANCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAAaa ]
[+] EMBL AU182541 [ CTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTATGGGTGGATCATCATATACTCCCCCCGTCCCAAAAA]
consensusID : consensus_16456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 653 fasta sequence
[TTAATTTCTCTCTTCATCATCATCTCGNTCTCGATCTNCTACAGAAGCTACAATAGCCAGGAAATNAATCGATCGNTCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTA-CGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCC-GGCGC-TGACGCCGCCCTCGGGGTTGGCGCCAACGCCGCCGGCGC-CGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTG-GCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGGCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCACGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGCCAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGATAAAAAAAAAGTCAAATCTTGGAAATATAAATAATGAACAACTCTCAAATTATTGAGTTTGAAAAAAAA]
[+] EMBL C72795 [TTAATTTCTCTCTTCATCATCATCTCGNTCTCGATCTNCTACAGAAGCTACAATAGCCAGGAAATNAATCGATCGNTCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTA CNCCCACNTCGGGGTTGGGGCT GGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCC GGCGCTTGACGCCGCCCTCGGGGTTTGNGCCAANGCCGCC GCGCNCGCC GGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGT ]
[+] EMBL AU182544 [ TCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTAGCGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCC GGCGC TGACGCCGCCCTCGGGGTTGGCGCCAACGCCGCCGGCGC CGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTG GCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGGCGTACATCTCCACGACTCCATCCGCCCG ]
[+] EMBL AU182545 [ GCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCC GGCGC TGACGCCGCCCTCGGGGTTGGCGCCAACGCCGCCGGCGC CGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTG GCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGGCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCACGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGCCAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGATAAAAAAAA ]
[+] EMBL AU076061 [ CGCCGGCGTCGGTGCCNCCGTCGGGGCCGGGCGC TAACNCCGCCCTCGGGGTTGGCGCCAACGCCGCCGGCGC CGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTG GCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGGCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCACGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGCCAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGATAATGTTTAAGTCAAATCTTGGAAATATAAATAATGAACAACTCTCAAATTATTGAGTTTGAAAAAAAA]
[+] EMBL AU094018 [ GGGGTTGGCGCCAACGCCGCCGG GC CGCCGGNGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTGNGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGNCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCACGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGCCAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGAAAAAAAA ]
consensusID : consensus_16456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 428 fasta sequence
[AATTTCTCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCCGGCGCTGACGCGCCCTCGGGGTTGGCGCCAACGCCGCCGGGCCG-CGGGACTTGAGTTTGGGCTTNGAATTTGAGCCGCCGCAACGTCGNCGGGTCTTTTAACCGGCGNCGCCAAGGGCGCCGNCGAGTTGGCAACCAAAGTCATNTTTTAAATCAATCATTCAATCAACCGGCGGGCGTAAATTTCAAGAATTCAA]
[+] EMBL C72231 [AATTTCTCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTAGGCCCACGTCGGGGTTGGGG TGGGG CGGGGCCGACGNCGGCGTCGGTGCCGCCGTCGGGGCCGGCGCTGACGCGCCCTCGGGGTTGGCGCCAACGCCGCCGGGCCG CGGGACTTGAGTTTGGGCTTNGAATTTGAGCCGCCGCAACGTCGNCGGGTCTTTTAACCGGCGNCGCCAAGGGCGCCGNCGAGTTGGCAAC ]
[+] EMBL C72869 [ ATTTCTCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTACGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCCGGCGCTGACGCGCCCTCGGGGTTGGCGCCAACGCCGCCGGGCCGCCGGGGCTGGAGTTGGGGC TGGAATTGGAGCCGCCGCAACGTCGCCGGGTC TCTCACAGGCGCCGCNAAGGGCGCCGCCGGGTTGGCAACCAAAGTCATNTTTTAAATCAATCATTCAATCAACCGGCGGGCGTAAATTTCAAGAATTCAA]
[+] EMBL C73343 [ TCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCG CGGCGCTANGCCCACGTNGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTNCCGCCGTCGGGGCCGGCGCTNACGCGCCCTCGGGNTTG ]
[+] EMBL C73401 [ TCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCNGGCTTCGGTGCCGCCNTCGGGGCCGGCGCTAACGCGCCCTCGGGTTTGGCGCCAACGCCGCC ]
consensusID : consensus_16456#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 420 fasta sequence
[ATTTCTCTCTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCATGAAGATGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGNGGCGCCGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTNGGCTTCGCNCCGCCNTCGGGGCTGGCGCTAACGCGCCCTCGGGTTTGGNNCCGGCNCCGCCNGGCNCNGGNGCCCTGGAATTTGGAGCTGGANTTGGAGCCGCCGCCAACTTNGCCGGGTCTTTAAACGGGCCGNTAAGGGCGCNCCCGGTTTGGNAACCAAAGGTCAATGTTTTAAAATTCAATCGATCGATNGAACGNGCCGGGNTTTCCATTTTCAA]
[+] EMBL C99070 [ATTTCTCTCTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCATGAAGATGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGNGGGNGGCGCCGGCGCTAc ]
[+] EMBL C73317 [ TCTCTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCATGAAGATGAACAAGATTGNCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGNGGCG CGGCGCTAN ]
[+] EMBL C73390 [ nTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCATGAAGATGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCG CGGCGCTAg ]
[+] EMBL C73191 [ TCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTNGGCTTCGCNCCGCCNTCGGGGCTGGCGCTAACGCGCCCTCGGGTTTGGNNCCGGCNCCGCCNGGCNCNGGNGCCCTGGAATTTGGAGCTGGANTTGGAGCCGCCGCCAACTTNGCCGGGTCTTTAAACGGGCCGNTAAGGGCGCNCCCGGTTTGGNAACCAAAGGTCAATGTTTTAAAATTCAATCGATCGATNGAACGNGCCGGGNTTTCCATTTTCAA]
consensusID : consensus_16456#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence
[CACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCNCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCANATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGNGCTAATTCATCCTTCACNCCATTAATTTGTTATAAANANANANCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182494 [CACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCNCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCANATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGNGCTAATTCATCCTTCACNCCATTAATTTGTTATAAANANANANCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_16456#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 306 fasta sequence
[TNATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANNCCCACGTNGGGGTTGGGGCTGGGGCTGGGGCCGACGNAGGNTTCGC-GCCGCCNTCGGGGCTGGCGCTAACGCGCCCTCGGGTTTGGNGCCGGCNCCGCNGNCNCGNGGN-N-CT--GNATTTGGAGCTGGAATTGGAGCCGCCGCCAACTTNGCCGGG]
[+] EMBL AU069827 [TNATCTTTNCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANNCCCACGTNGGGNTTGGGGCTGGGGCTGGGGCCGACGNAGGNTTCGC NCCGCCNTCGGGGCTGGCGCTAACGCGCCCTCGGGTTTGGNNCCGGCCCCGCNGACNCGNGGN N CTTNGNATTTGGAGCTGGAATTGGAGCCG ]
[+] EMBL AU069793 [tcATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGGCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGNCGGCTTCGC GCCGCCNTCGGGGCTGGCGCTNACGCGCCCTCGGGTTTNGCGCCGGCNACGCNGNCNCGNGGN N CT GGANTTNGAGCTGGAATTGGAG ]
[+] EMBL AU069795 [ TCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANGCCCACGTCGGGNTTGGGGCTGGGGCTGGGGCCGACGTNGGNTTCGC GCCGCCNTCGGGGCTGGCGCTNACGCGCCCTCGGGTTTGGNGCCGGCNCCGCNGNCNC NGGNGNACT GNATTTGGAGCTGGAATTGNAGCCGCCGCCAACTTNGCCGGG]
[+] EMBL AU069807 [ TCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANNCCCACGTNGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCTTCGC NCCGCCGTCGGGGCTGGCGCTAACGCGCCCTCGGGNTTGGAGCCGGCNCCGCNGGACCGNGGN N CT GGANTTGGAGCTGGAATTGGAGCCG ]
[+] EMBL AU069806 [ TCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANNCCCACNTNGGGGTTGGGGCTGGGGCTGGGGCCGACGNAGGNTTCGCGGCCGCCNTCGGGGCTGGCGCTAACGCGCCC ]
consensusID : consensus_16456#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 296 fasta sequence
[GCCGCCGGCGCCGCCGGGTCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCCATCGATCGATCGAGCGCGCGGCGGCGTCATCTCCACTACTCCATCCGCCCGTAGCAGCGCCGGCCATCGATCCACGACCATTCGCCGTCCATTGTTTTTGTTGTTAATAATCAAAGTTTGGTTAATTTAACCGTCAAGTGTTTGGTTGTTTATTTTATACTCCATCCGTACTGAT]
[+] EMBL AU076060 [GCCGCCGGCGCCGCCGGGTCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCCATCGATCGATCGAGCGCGCGGCGGCGTCATCTCCACTACTCCATCCGCCCGTAGCAGCGCCGGCCATCGATCCACGACCATTCGCCGTCCATTGTTTTTGTTGTTAATAATCAAAGTTTGGTTAATTTAACCGTCAAGTGTTTGGTTGTTTATTTTATACTCCATCCGTACTGAT]
[+] EMBL AK107837 [ CGGCGCCGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCCATCGATCGATCGAGCGCGCGGCGGCGTCATCTCCACTACTCCATCCGCCCGTAGCAGCGCCGGCCATCGATCCACGACCATTCGCCGTCCATTGTTTTTGTTGTTAATAATCAAAGTTTGGTTAATTTAACCGTCAAGTGTTTGGTTGTTTATTTTATACTCCATCCGTACTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16456#3 ------ATTTCTCTCTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAG 54
consensus_16456#5 ----------------TNATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAG 44
consensus_16456#2 --AATTTCTCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAG 58
consensus_16456#1 TTAATTTCTCTCTTCATCATCATCTCGNTCTCGATCTNCTACAGAAGCTACAATAGCCAG 60
consensus_16456#0 -ATCGATCTTAATTTCTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAG 59
consensus_16456#6 -------------------------------------------------------GCCGC 5
consensus_16456#4 ---------------------------------------CACCCAAGGTGCATGTGTGAG 21
*
consensus_16456#3 CAAATCAATCGATCGATC----CGTACAATGGCGGCCATGAAGATGAACAAGATTGCC-G 109
consensus_16456#5 CAAATCAATCGATCGATC----CGTACAATGGCGGCCCTGAAGATGAACAGGATGGNC-G 99
consensus_16456#2 CAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCC-G 117
consensus_16456#1 GAAATNAATCGATCGNTCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCC-G 119
consensus_16456#0 CAAATCAATCGATCGATC----CGTACAATGGCGGCCCTGAAGATGAACAGGATGGCC-G 114
consensus_16456#6 CGGCGCCGCCG---GGTC------TGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAAC-G 55
consensus_16456#4 ---ATCGATCGATCGATCGA-GCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCG 77
** * ** * * * *
consensus_16456#3 TGGCGGCGCTGTTCCTCGTCGCCGTGGTGG--TGGCGGGN--GGCGCCGGCGCTANGCCC 165
consensus_16456#5 TGGCGGCGCTGTTCCTCGCCGCCGTGGTGG--TGGCGGGC--GGCGCTGGCGCTANNCCC 155
consensus_16456#2 TGGCGGCGCTGTTCCTCGTCGCCGTGGTGG--TGGCGGGC--GGCGCCGGCGCTANGCCC 173
consensus_16456#1 TGGCGGCGCTGTTCCTCGTCGCCGTGGTGG--TGGCGGGC--GGCGCCGGCGCTACGCCC 175
consensus_16456#0 TGGCGGCGCTGTTCCTCGCCGCCGTGGTGG--TGGCGGGC--GGCGCTGGCGCTACGCCC 170
consensus_16456#6 TCGCCGGGTCTCTCACCGGCGCCGCCGGCG--TGGCACCCAAGGTGCATGTGTGAGATCG 113
consensus_16456#4 CAGCGGCTCCGGCGATCCATATTTTTATAAATTCNCAGTCGATTGTTTGTTGTTAATCAA 137
** * * * * * *
consensus_16456#3 ACGTCGGGGTTGGGGCTGGGGCTGGGGCCGAC-GTNGGCTTC-G-CNCCGCCNTCGGGGC 222
consensus_16456#5 ACGTNGGGGTTGGGGCTGGGGCTGGGGCCGAC-GNAGGNTTC-G-CGCCGCCNTCGGGGC 212
consensus_16456#2 ACGTCGGGGTTGGGGCTGGGGCCGGGGCCGAC-GCCGGCGTC-GGTGCCGCCGTCGGGGC 231
consensus_16456#1 ACGTCGGGGTTGGGGCTGGGGCCGGGGCCGAC-GCCGGCGTC-GGTGCCGCCGTCGGGGC 233
consensus_16456#0 ACGTCGGGGTTGGGGCTGGGGCTGGGGCCGAC-GCNGGCGTC-G-CGCCGCCGTCGGGGC 227
consensus_16456#6 A--TCGATCCATCGATCGATCGAGCGCGCGGC-GGCGTCATC-TCCACTACTCCATCCGC 169
consensus_16456#4 AGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCANATGCAAACCTCGCGAT 197
* * * * * * * ** *
consensus_16456#3 TGGCGCTAACGC-GCCCTCGGGTTTGGNNCCGG-CNCCGCCNGGCNCNGGNGCCCTGGAA 280
consensus_16456#5 TGGCGCTAACGC-GCCCTCGGGTTTGGNGCCGG-CNCCGCNGN--CNCGNGGNNCTGNA- 267
consensus_16456#2 CGGCGCTGACGC-GCCCTCGGGGTTGGCGCCAA-CGCCGCCGG--GCCGCGGGACTTGAG 287
consensus_16456#1 CGGCGCTGACGCCGCCCTCGGGGTTGGCGCCAA-CGCCGCCGGCGCCGCCGGGGCTGGA- 291
consensus_16456#0 TGGCGCTGACGC-GCCCTCGGGGTTGGCGCCGG-CGCCGCCGGCGCCGCCGGGGCTGGA- 284
consensus_16456#6 CCGTAGCAGCGCCGGCCATCGATCCACGACCATTCGCCGTCCATTGTTTTTGTTGTTAAT 229
consensus_16456#4 TTGTGATAA-ATAATTACCGAAATGTATGTGTG-TGTGGGGNGCTAATTCATCCTTCACN 255
* * *
consensus_16456#3 -TTTGGAGCTGGANT--TGGAGCCGCCGCCAACTTNGCCGGGTCTTTAAACGGGC--CGN 335
consensus_16456#5 -TTTGGAGCTGGAAT--TGGAGCCGCCGCCAACTTNGCCGGG------------------ 306
consensus_16456#2 -TTTGGGCTTNGAAT--TTGAGCCGCCGC-AACGTCGNCGGGTCTTTTAACCGGCGNCGC 343
consensus_16456#1 -GTTGGGGCTGGAAT--TGGAGCCGCCGCCAACGTCGCCGGGTCTCTCA-CCGGCGCCGC 347
consensus_16456#0 -GTTGGAGCTGGAAT--TGGAGCCGCCGCCAACGTCGCCGGGTCTCTCA-CCGGCGCCGC 340
consensus_16456#6 AATCAAAGTTTGGTTAATTTAACCGTCAAGTGTTTGGTTGTTTATTTTATACTCCATCCG 289
consensus_16456#4 CCATTAATTTGTTATAAANANANANCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAA 315
* * *
consensus_16456#3 TAAGGGCGCNCCCGGTTTGGNAACCAAAG-GTCAATGTTTTAAAATTCAATCGATCGATN 394
consensus_16456#5 ------------------------------------------------------------
consensus_16456#2 CAAGGGCGCCGNCGAGTTGGCAACCAAAG-TCATNTTTTAAATCAATCATTCAATCAACC 402
consensus_16456#1 CGAGGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGC 407
consensus_16456#0 TGAGGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGC 400
consensus_16456#6 TACTGAT----------------------------------------------------- 296
consensus_16456#4 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 339
consensus_16456#3 GAA---CGNGCCGGGNTTTCCATTTTCAA------------------------------- 420
consensus_16456#5 ------------------------------------------------------------
consensus_16456#2 GGC---GGGCGTAAATTTCAAGAATTCAA------------------------------- 428
consensus_16456#1 GGCG--CGGCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCA 465
consensus_16456#0 GCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATT 460
consensus_16456#6 ------------------------------------------------------------
consensus_16456#4 ------------------------------------------------------------
consensus_16456#3 ------------------------------------------------------------
consensus_16456#5 ------------------------------------------------------------
consensus_16456#2 ------------------------------------------------------------
consensus_16456#1 CGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGC 525
consensus_16456#0 ---TTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGT 517
consensus_16456#6 ------------------------------------------------------------
consensus_16456#4 ------------------------------------------------------------
consensus_16456#3 ------------------------------------------------------------
consensus_16456#5 ------------------------------------------------------------
consensus_16456#2 ------------------------------------------------------------
consensus_16456#1 CAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGAT 585
consensus_16456#0 CGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGA 577
consensus_16456#6 ------------------------------------------------------------
consensus_16456#4 ------------------------------------------------------------
consensus_16456#3 ------------------------------------------------------------
consensus_16456#5 ------------------------------------------------------------
consensus_16456#2 ------------------------------------------------------------
consensus_16456#1 AAAAAAAAAGTCAAATCTTGGAAATATAAATAATGAACAACTCTCAAATTATTGAGTTTG 645
consensus_16456#0 AATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATA 637
consensus_16456#6 ------------------------------------------------------------
consensus_16456#4 ------------------------------------------------------------
consensus_16456#3 ------------------------------------------------------------
consensus_16456#5 ------------------------------------------------------------
consensus_16456#2 ------------------------------------------------------------
consensus_16456#1 AAAAAAAA---------------------------------------------------- 653
consensus_16456#0 TATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTATGGGTGGATCAAAAAATAC 697
consensus_16456#6 ------------------------------------------------------------
consensus_16456#4 ------------------------------------------------------------
consensus_16456#3 -----------------
consensus_16456#5 -----------------
consensus_16456#2 -----------------
consensus_16456#1 -----------------
consensus_16456#0 TCCCCCCGTCCCAAAAA 714
consensus_16456#6 -----------------
consensus_16456#4 -----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||