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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 30 consensus length = 614 fasta sequence
[CGCTTCTTCTTCCGCCTCCGCCT-CCCATGGCAGCTCCCAG-C-TCGT-GGGACA-CC-TCCTTCCACGAAGCAACCACAGCAAG-G-CAATA-GCGCCACCCACC-GCTCGCATCCACAGCTGCTGATTCGT-AGGAGGAGCAGGC-CAGGGAGGGATTCGTTGATTTTATTTGGCA-GGGAAGGAG-AT-CCGAGAGGAAGAA-GGGGAATATAGAT-CGATGGGGAAGTACGT-GGAGCTGCTC-GACAT-GGGGGTGCGCATCGCCGCG-C-GGTTCCACTCCCAC-T-GCCCGCAGACGGCGAGGATGTACTACCACCCG-CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC-TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG-GCCGCCGCC-GACA-CCGCGGAGATCATCCTCTACG-CCGTCGTCTAGAGT-T-AGCCTCT-AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA-GGAATGTATTTTTCTTTT-GTTTTTCTTTAAAGAGGAAAAAAAACA-AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAAAAA]
[+] EMBL AK070315 [CGCTTCTTCTTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGA ]
[+] EMBL OS1321715 [ CTTCTTCTTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCACTT NCCCGCAGACGGCGAGGATGTACTACCACCCGNCCGCCGTCCTCCTCCTNGT ]
[+] EMBL AA751030 [ttCTTCTTCTTCCGCCTCCGCCG CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAACGAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCTACCACAGCTGCTGTATCGTGAGGAGGAcgag ]
[+] EMBL CB682721 [ TTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCCCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGAGGAGATCATCCTCTACG CCGTCGACTAAAGT T AGCCTCG AGACTCTCGATCCAGACACTTCACGCGGAAATGGA GGAATGTATTTTGCTTTT GTTTTTCTTTAGAGAGGAAAAAAAACA AAGAGGACTTGCAGATTGGGTGATTTATTGATGGA ]
[+] EMBL AU174543 [ TTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAGAATCCCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCTTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGNCTTCGCCGCGAAGAGGATGCCCCG ]
[+] EMBL OSR14722A [ TTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC ]
[+] EMBL CB635679 [ TCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGTTTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGA ]
[+] EMBL OSC904 [ TCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCACTT GCCCGCAGACGGCGAGGATGTAC ]
[+] EMBL OS1321867 [ CCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GNTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG G GGTTCCACTCCCAC T GCCCGTAGACGNCGAG ]
[+] EMBL CF589237 [ CGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCTTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGAGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGAT ]
[+] EMBL AU094479 [ CGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAA ]
[+] EMBL AU164633 [ CCG CT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAAAA ]
[+] EMBL CB681363 [ CGCCT CCCTTGGCAGCTCCCAG CATCGT GGGACA CCATCCTTCCACGAAGCAACCACAGCAAG G CAATAGGCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCACGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCG ]
[+] EMBL BI797981 [ GCCTCCCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGTTTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAAC AAGTGGACTTGGAGATT GCTGCTTTATTGATGGAGTGAAATGAAAaaaaa ]
[-] EMBL CB685839 [ T CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACATAAGTGGACTTGGAGATTGGTTGGTTTATTGAGGGAGTGAAATGAAATGAATGGAATGATTTGATAtt ]
[+] EMBL OSC9231 [ CATNGCAGCTCCCAG C TCGT NGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CANGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGA GAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT NGAGCTGCTC GACAT TGGGGTNCGCATC NCGCG GGTTCCACTCCCAC T NCCCGCAGACNGCGAGGATGTACTACCACCCN CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCNCCGCCGCg ]
[+] EMBL CB685838 [ ATGGCAGCTCCCAGTC TCGTAGGGACACCC TCCTTCCACGAAGCAACCACAGCAAGTGTCAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCTT ACGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCAAGAGGAACAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA ]
[+] EMBL AU069787 [ GACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACCGGCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTT CTCAGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC Tn ]
[+] EMBL CB680705 [ TTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CACGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGAACGT GGAGCTGCTC AACAT GGGGGTGCGCATCACCGCGAC GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCCAAGAGGATGCCCCGGAGCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGTGT AGCCTCT AAACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGGATTTGTCGTTT GCTTTTCTTTAGAGAGGAAAAAAAACA AA ]
[+] EMBL OS1363A [ ACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGNCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGCTTGCGCGGGCTTCGCCGGGAAGAGGATGCCCCGG GCCGNCGCC GACA ACGNGGAGATCATCCTNTACG GCGTNGTCTAGAGT T AG CTTT AGANT TTGATTCAGANG TTTA GGGGAAAT ]
[+] EMBL BI795275 [ CTGCTGATTCGT AGGAGGAGCAGGCACAGGGA GGTTTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAAC AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAA ]
[+] EMBL BI799769 [ GT AGGAGGAGCAGGC CAGGGAGGGTTTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACC AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAA ]
[+] EMBL OSS15671A [ GGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCNGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCCCGGNCTTCGCCGCNAAGAGGATGCCCCGG GCCGCCGCC GACACCCGCGGAGATCATCCTCTANGNCCGTCGTCTAGAGT TAAGCCTCTAAGACTCTCGA ]
[+] EMBL OSS15439A [ GGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG NCGNCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGNCGNCGCCGGTTC GCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATTCCCCGG GCCGCCGCC GACA ACGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAAACGGTTCACGCGGAAATGGAGGGAATGTATTTTTCTTTTNGTTT ]
[+] EMBL AU174542 [ CGTTGATTTTATTTGNCAGGGGAAGGAG AT CCGAGAGGAAGAAGGGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCTTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGAGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAA ]
[+] EMBL BI795232 [ AG AT CCGAGAGGAAGAA GGGGAATATAGATGCGATGGGGAAGTACGTGGGAGCTGCTCGGACATGGGGGGTGCGCATC CCGCG CGGGTTCCACTCCCAC TGGCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCTGC AGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCCAGACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTAaccaaaaaa ]
[+] EMBL CF324526 [ GAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCTTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCG ]
[+] EMBL BI794881 [ GT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACC AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAA ]
[+] EMBL AU069786 [ gcGTTCCA TCCCA T GCCCGCAGACGGCGAGGATGTATTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGNCGGC TGCGCGGG TTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGAC CTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAA ]
[+] EMBL AU223392 [ CGTCCTCCTCCTGGTCNCCGTCTTCCTCCGCCGCCGCCGGTTNGGCCGNCGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCCCCGCC GACN CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTNT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTAAAAAAA]
consensusID : consensus_16494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[CATGGACTGAGGAGTAGAAATTTTCTTTAAAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTTCCCTTTTCTTAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCTAAAGGGGAGGGTAAAAAAAATAAAGGGGCGGGTTTTAAAAAACTGGGAAAGGGAAAAAACCTGGGGTTACCAAAATAAAATCCTTTGAAAAAAAACCCCTTTTTCCAAAGGGGGGAAAAAAAA]
[+] EMBL CF336696 [CATGGACTGAGGAGTAGAAATTTTCTTTAAAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTTCCCTTTTCTTAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCTAAAGGGGAGGGTAAAAAAAATAAAGGGGCGGGTTTTAAAAAACTGGGAAAGGGAAAAAACCTGGGGTTACCAAAATAAAATCCTTTGAAAAAAAACCCCTTTTTCCAAAGGGGGGAAAAAAAA]
consensusID : consensus_16494#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[CCTCCTGGTCGCCGTCTTCCTCCTCCGCCGCCGGTTTGTCCTACGGCGGCGGCGGCGGGCTGCGCGGGCTTNTCCGCGAAGAGGATGCCCCGGGCCGCCNCCGACACCGCGGAGATCATCCTNTNCGCCGTCGTCTAGAGTTAGCCTCTAGACTNTCGATCCAGACGCTTCNCGCGGAAATGGAGGAATGTATTTTTCTTTTGTTTTTCTTTAAAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTACGTGAAAAAAAA]
[+] EMBL AU184174 [CCTCCTGGTCGCCGTCTTCCTCCTCCGCCGCCGGTTTGTCCTACGGCGGCGGCGGCGGGCTGCGCGGGCTTNTCCGCGAAGAGGATGCCCCGGGCCGCCNCCGACACCGCGGAGATCATCCTNTNCGCCGTCGTCTAGAGTTAGCCTCTAGACTNTCGATCCAGACGCTTCNCGCGGAAATGGAGGAATGTATTTTTCTTTTGTTTTTCTTTAAAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTACGTGAAAAAAAA]
consensusID : consensus_16494#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence
[CCGCGTAGAGGATGCCCCGGACCGCCAGCCGACACCGCCGGAGAGTCATCCTCGTACGCCGTCGTCTTAGAGTTAGCCTCTAGACTCTCGATCCATGACGCTTCACGCGCAAACTGGCGGATATGCATCTTTTCATTTTGTTTTTCCTTTGATAAGACGGAGATAACAAACCACAGTGGACTTGTGAGATTGGTTGGTTTATTGACTGGAGATGAAATGCAATGAATGGAATGCACTTTGATATTTACGTGTTTTAAAAAAA]
[+] EMBL BI796426 [CCGCGTAGAGGATGCCCCGGACCGCCAGCCGACACCGCCGGAGAGTCATCCTCGTACGCCGTCGTCTTAGAGTTAGCCTCTAGACTCTCGATCCATGACGCTTCACGCGCAAACTGGCGGATATGCATCTTTTCATTTTGTTTTTCCTTTGATAAGACGGAGATAACAAACCACAGTGGACTTGTGAGATTGGTTGGTTTATTGACTGGAGATGAAATGCAATGAATGGAATGCACTTTGATATTTACGTGTTTTAAAAAAA]
consensusID : consensus_16494#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence
[GGAAGGATGCCCCCGGGGCCCCCCCCCCGACCACCCCCGGGAGGATCAATCCCTTTACCCCCTTCGGTTCTTAAGAGTTTAGCCCTCTAGGACTCTCGATCCCAAGACGCTTTCACGCGGAAATGGAGGAATGCAATGTTTTCTTTTGTTTTTCTTTAAAGAGGAAAAAAAACCAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAAAA]
[+] EMBL BI812401 [GGAAGGATGCCCCCGGGGCCCCCCCCCCGACCACCCCCGGGAGGATCAATCCCTTTACCCCCTTCGGTTCTTAAGAGTTTAGCCCTCTAGGACTCTCGATCCCAAGACGCTTTCACGCGGAAATGGAGGAATGCAATGTTTTCTTTTGTTTTTCTTTAAAGAGGAAAAAAAACCAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16494#0 CGCTTCTTCTTCCGCCTCCGCCTCCCATGGCAGCTCCCAGCTCGTGGGACACCTCCTTCC 60
consensus_16494#2 ------------------------------------------------------------
consensus_16494#3 ------------------------------------------------------------
consensus_16494#4 ------------------------------------------------------------
consensus_16494#1 ------------------------------------------------------------
consensus_16494#0 ACGAAGCAACCACAGCAAGGCAATAGCGCCACCCACCGCTCGCATCCACAGCTGCTGATT 120
consensus_16494#2 ------------------------------------------------------------
consensus_16494#3 ------------------------------------------------------------
consensus_16494#4 ------------------------------------------------------------
consensus_16494#1 ------------------------------------------------------------
consensus_16494#0 CGTAGGAGGAGCAGGCCAGGGAGGGATTCGTTGATTTTATTTGGCAGGGAAGGAGATCCG 180
consensus_16494#2 ------------------------------------------------------------
consensus_16494#3 ------------------------------------------------------------
consensus_16494#4 ------------------------------------------------------------
consensus_16494#1 ------------------------------------------------------------
consensus_16494#0 AGAGGAAGAAGGGGAATATAGATCGATGGGGAAGTACGTGGAGCTGCTCGACATGGGGGT 240
consensus_16494#2 ------------------------------------------------------------
consensus_16494#3 ------------------------------------------------------------
consensus_16494#4 ------------------------------------------------------------
consensus_16494#1 ------------------------------------------------------------
consensus_16494#0 GCGCATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGACGGCGAGGATGTACTACCACCC 300
consensus_16494#2 ------------------------------------------------------------
consensus_16494#3 ------------------------------------------------------------
consensus_16494#4 ------------------------------------------------------------
consensus_16494#1 -------------------------------CATGGACTGAGGAGTAGAAATTTTCTTTA 29
consensus_16494#0 GCCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGG 360
consensus_16494#2 -----------CCTCCTGGTCGCCGTCTTCCTCCTCCGCCGCCGGTTTGTCCTACGGCGG 49
consensus_16494#3 ------------------------------------------------------------
consensus_16494#4 ------------------------------------------------------------
consensus_16494#1 AAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGA 89
consensus_16494#0 CGGCGGCGG-CTGCGCGGGCTTCGCCGCGAAGAGGATGCCCC---GGGCCGCC-GCCGAC 415
consensus_16494#2 CGGCGGCGGGCTGCGCGGGCTTNTCCGCGAAGAGGATGCCCC---GGGCCGCC-NCCGAC 105
consensus_16494#3 ------------------------CCGCGTAGAGGATGCCCC---GGACCGCCAGCCGAC 33
consensus_16494#4 -----------------------------GGAAGGATGCCCCCGGGGCCCCCCCCCCGAC 31
consensus_16494#1 AATGAATGGAATGATTTGATATTTACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 149
* * *
consensus_16494#0 -ACCGC--GGAGA-TCA-TCCTC-TACGCCGTCG---TCT--AGAGTTAG--CCTCTAG- 461
consensus_16494#2 -ACCGC--GGAGA-TCA-TCCTN-TNCGCCGTCG---TCT--AGAGTTAG--CCTCTAG- 151
consensus_16494#3 -ACCGCC-GGAGAGTCA-TCCTCGTACGCCGTCG---TCTT-AGAGTTAG--CCTCTAG- 83
consensus_16494#4 CACCCCCGGGAGGATCAATCCCTTTACCCCCTTCGGTTCTTAAGAGTTTAGCCCTCTAGG 91
consensus_16494#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 209
* * * * * *
consensus_16494#0 ACTCTCGATCC-A-GACGCTT-CACGCGGAAA-TGGAGGA-ATGTATTTTTC---TTTTG 513
consensus_16494#2 ACTNTCGATCC-A-GACGCTT-CNCGCGGAAA-TGGAGGA-ATGTATTTTTC---TTTTG 203
consensus_16494#3 ACTCTCGATCC-ATGACGCTT-CACGCGCAAACTGGCGGATATGCATCTTTTCA-TTTTG 140
consensus_16494#4 ACTCTCGATCCCAAGACGCTTTCACGCGGAAA-TGGAGGA-ATGCAATGTTTTC-TTTTG 148
consensus_16494#1 AAAAAAAACCCCGGGTTTCCCTTTTCTTAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAA 269
* * ** * * *** ** * * *
consensus_16494#0 TTTTTCTTTAAAGAGGA-------AAAAAAACAAAGTGGA----CTTG-GAGATTGGTTG 561
consensus_16494#2 TTTTTCTTTAAAGAGGA-------AAAAAAACAAAGTGGA----CTTG-GAGATTGGTTG 251
consensus_16494#3 TTTTTCCTTTGATAAGACGGAGATAACAAACCACAGTGGA----CTTGTGAGATTGGTTG 196
consensus_16494#4 TTTTTCTTTAAAGAGGA-------AAAAAAACCAAGTGGA----CTTG-GAGATTGGTTG 196
consensus_16494#1 AATCCCCCTAAAGGGGAGGGTA--AAAAAAATAAAGGGGCGGGTTTTAAAAAACTGGGAA 327
* * * * ** ** *** ** ** ** * * ***
consensus_16494#0 GTTTATTGA---TGGAG----TGAAATGAAATGAATGGAATGA--TTTGATAA------A 606
consensus_16494#2 GTTTATTGA---TGGAG----TGAAATGAAATGAATGGAATGA--TTTGATATTTACGTG 302
consensus_16494#3 GTTTATTGAC--TGGAGA---TGAAATGCAATGAATGGAATGCACTTTGATATTTACGTG 251
consensus_16494#4 GTTTATTGA---TGGAG----TGAAATGAAATGAATGGAATGA--TTTGATAAA------ 241
consensus_16494#1 AGGGAAAAAACCTGGGGTTACCAAAATAAAATCCTTTGAAAAAAAACCCCTTTTTCCAAA 387
* * *** * **** *** * *** *
consensus_16494#0 A---AAAAAAA--- 614
consensus_16494#2 A---AAAAAAA--- 310
consensus_16494#3 TTTTAAAAAAA--- 262
consensus_16494#4 ----AAAAAAA--- 248
consensus_16494#1 GGGGGGAAAAAAAA 401
*****
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||