These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1138 fasta sequence [CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACTCCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGCCGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCCGTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATCGCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAGATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCGCTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATATATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGGCATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGCAATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTAAGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC] [+] EMBL AK068422 [CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACTCCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGCCGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCCGTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATCGCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAGATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCGCTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATATATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGGCATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGCAATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTAAGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC] consensusID : consensus_1655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGCAAGTNTTCATAGAAGGTAGTGGTGACCCCTAATTTGTTCATATGTAAGCTACTATAAATATAGAAGTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAAAACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCTTCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCTT] [+] EMBL CA753323 [ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGGAAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGCAAGTNTTCATAGAAGGTAGTGGTGACCCCTAATTTGTTCATATGTAAGCTACTATAAATATAGAAGTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAAAACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCTTCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1655#0 CTCTCGCCCTATCGGTTCCGCTTCTCCTCTCCCCTCGCCATGTCGCTTGCCGTGGCCACT 60 consensus_1655#1 ------------------------------------------------------------ consensus_1655#0 CCCGCCTCCGCCCGCCTCTCCCCGCTCACCACCTCCTCCCCCGAACCCTGCCGCCGCCGC 120 consensus_1655#1 ------------------------------------------------------------ consensus_1655#0 CGCCTCCTCCTCTCCGCAGCCGCCCCTCTCCGGCGCACCCGTCTCCGGCGCCGCATCGCC 180 consensus_1655#1 ------------------------------------------------------------ consensus_1655#0 GTCGTCGCGTCCGTCCCCGACCCCGCGGCGCGGCCGGCGGAGTACACGCCCTGGCTCATC 240 consensus_1655#1 ------------------------------------------------------------ consensus_1655#0 GCCGGCCTCGGCAACCCCGGCAGCAAGTACCACGGCACGCGTCACAACGTGGGGTTTGAG 300 consensus_1655#1 ------------------------------------------------------------ consensus_1655#0 ATGGTCGATCGCATCGCGCGAGACGAGGGGATCACCATGAACACGATCCAGTCCAAGTCG 360 consensus_1655#1 ------------------------------------------------------------ consensus_1655#0 CTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATAT 420 consensus_1655#1 ------------------------------------------------------------ consensus_1655#0 ATCAACTACAGTGGGGAGGCAATTGGACCTCTTGCTGCCTATTATCAAGTACCATTGCGG 480 consensus_1655#1 ------------------------------------------------------------ consensus_1655#0 CATATCCTTGTGATGTATGATGAGATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGG 540 consensus_1655#1 ------------------------ATGAGTCTACCCAATGGTGTATTGCGTCTTCAACGG 36 ************************************ consensus_1655#0 AAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCC 600 consensus_1655#1 AAAGGTGGTCATGGTCGCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCC 96 ************************************************************ consensus_1655#0 CGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACACGCGT 660 consensus_1655#1 CGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGCCCACCCGGCAAAATGGACATGCGT 156 ******************************************************* **** consensus_1655#0 GCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAG 720 consensus_1655#1 GCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTTGGAG 216 ************************************************************ consensus_1655#0 CAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGA 780 consensus_1655#1 CAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGA 276 ************************************************************ consensus_1655#0 TTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGAT 840 consensus_1655#1 TTCAATCTGGTTCAGAAGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGAT 336 ************************************************************ consensus_1655#0 ATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTCGGACGTGGT 900 consensus_1655#1 ATACTTGCTGAGGACGCATAAATACGCATCATCAATATCATTGGAAGTGTTGGACGTGGT 396 ************************************************** ********* consensus_1655#0 ACTTTGCACAATCTACGTAAGTGCACTAAGTTGCTTCTGCAGTATCCTATAATTTTGAGG 960 consensus_1655#1 ACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTCCTGCAGTATCCTATAATNTTGAGG 456 ******************************* *** ***************** ****** consensus_1655#0 ATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTCTTTCCTTAGAGC 1020 consensus_1655#1 ATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNCTTCCTTAGAGC 516 *********************************************** *********** consensus_1655#0 AATTTTCATTAGAGAGGTAGTTGTGACCTCTAATTTTGTTCATATGTAAGCTACTTATTA 1080 consensus_1655#1 AAGTNTTCATAGA-AGGTAGTGGTGACCCCTAATTT-GTTCATATGTAAGCTACT--ATA 572 ** * * **** ******* ****** ******* ****************** ** consensus_1655#0 AGTATAAGAGGTAGCATATACAATACACCACCTCTACACTAGCTTTATTACACTAACC-- 1138 consensus_1655#1 AATATAGAA----GTACATATCATACACCAAAAAAAAAAANGGGGAACCAAAAAAAAAAA 628 * **** * * * *** ******** * * * * * * ** consensus_1655#0 ------------------------------------------------------------ consensus_1655#1 AACCAGGGGGCGGTCCCTTCCCATATATCATAATACGGCGTTTAAAGTTATGGAACGGCT 688 consensus_1655#0 ------------------------------------------------------------ consensus_1655#1 TCACTATCCGCCATCCTCCGCCGCATTAGCCCCACCCCANNCCCAGAGTATCTTTTACCT 748 consensus_1655#0 - consensus_1655#1 T 749 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||