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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 653 fasta sequence
[CGAGCCCTCTTCATCTTCCACACTTATCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA-GGGGTTT-GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC-GGGGG-AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT-CA-GGGG-AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAAAAAAAAAAAAAAAAAAAAAAACACT]
[+] EMBL AA754402 [CGAGCCCTCTTCATCTTCCACACTTATCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGGGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTA SGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATA ]
[+] EMBL AK066716 [ CACTTATCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTT ]
[+] EMBL CF319989 [ TCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAACTC GGGGGAAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTNCA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGCGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCT ]
[+] EMBL CF298925 [ CTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGGAAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCT ]
[+] EMBL AK065774 [ CTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTT ]
[+] EMBL CF328300 [ CTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCATCAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGC ]
[+] EMBL CF334342 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGGTTTGGGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGGAAGGTGGATCCATCGCCGGTGAGCTTNGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGGAAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTG TTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAAAAAAAAAAAAAAAAAAAAAAACACT]
[+] EMBL CF279356 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CAGGGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGGTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACAAAA ]
[+] EMBL CF311617 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAAaa ]
[+] EMBL CF310562 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAAaa ]
[+] EMBL CF298146 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CAGGGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATC ]
[-] EMBL CF280338 [ GGAGCAGCGGTAACTCCCCGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCCCCAGCGACGGCTGCAAAACGGGAAGGAGGGGCGTAACGGCGGCTCAGTGAA GGGGTTT GGCGCATTTCCTCCTTTGCTCCCGCCCGCCTTTACCAAATAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCCACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTTTAGGAACCAGCTC GGGGG AGGTGGATCCCTCCCCGGTGAGCTTGGGGGAGGCCCACGATCCGTTGCCCACCAGCT CA GGGG AGGTGGATCATCGTTTGCGGGCTCAGGGGAGGCCCATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTTTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTAAACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTTTAATTTGAATATGATGCTTGCCTGCCATGAAAA AAAAAAAAAAAAAA ]
[-] EMBL CF334341 [ AAGCGGGAAGGAGGGGCGTAACGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAAATAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTTTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTTTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTAAACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAAAAAAAAAAA ]
[-] EMBL CF319990 [ GCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGACCCTCGAGAGCCCGCATCAGAAGCCACCACCCTTGGGTGGTGACGACGCCCTCGATGATGTGACGATTTCTAGGACCAAACTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTACCCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGCGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAA AAAA AAAAAAAAAAAA ]
[-] EMBL CF279357 [ GCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGA AGGAGGTACATCGTCTGCGGGCTCAGAAAAGGCCGATTATTCATCAACAAATATGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCAAAGTTGTTCTTGGTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGGAAATTAACCAAAAA ]
[-] EMBL CF299928 [ GACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCCATTAAAA AAAAAAA ]
consensusID : consensus_16610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 640 fasta sequence
[CATGGCCTGAAGGAGTAGAAA---CTTCTGCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT-GGC--TCGCGGC--AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG-AAGGGGTTTGG-CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG-A-GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCC---AAAAAAAATTGCCCCAAAAAAAAAA]
[+] EMBL CF282229 [CATGGCCTGAAGGAGTAGAAA CTTCTGCGGTTCTCCCTCTCCTATCTATCTCTCACCGGTCGGCATGGAGCACCGGTAACTCCACTAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TAGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTATCGGCGGCTCAGAG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGCGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGAGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCATGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGT ]
[+] EMBL CF299927 [ GAGTAGAAACTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTA ]
[+] EMBL C74851 [ CGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACNCCACGAAAAGGCCCGGCGGCGGTGACNGCAAAGCGAGCAT GGC TCGGGNC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAA CGGGAAGGAGGGGCGTA CGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A AGTNGATCCAT ]
[+] EMBL AK104026 [ CGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATATGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTC ]
[+] EMBL CF335522 [ GGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AGGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTT ]
[+] EMBL CF301432 [ GTTCTCCCTCTCCTACCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTANCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG AGGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGT ]
[+] EMBL AU096091 [ TCTCCTATCTCTCTCTCACCGGTCGGNATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGNCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGNAAGGGGTTTGGCCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAANAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCNGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCCTTTAAAAAAAA ]
[+] EMBL CF336318 [ CTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGC AAGCGGaa ]
[+] EMBL OSS12134A [ ATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGGGCC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTA NGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGNCGACCTCGATGATGTNACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGC ]
[+] EMBL OSS12051A [ ATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCG NNC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAG GGGAAGGAGGGGCGTA NGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGA ]
[+] EMBL CF298415 [ TCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAA GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTG ]
[-] EMBL CF310563 [ CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTTTACCAANTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAAaaa ]
[-] EMBL CF311618 [ CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAAaaa ]
[-] EMBL CF282230 [ AGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTgaaaaaa ]
[+] EMBL CB685325 [ CCCGCCTTCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGA ]
[+] EMBL BI805688 [ cCATGGGCTTTCGCGGCCAAACTCAACAA CGGCCCA CAGCGACGGCT CAAAGCGGGAAGGAGGGGCGTA C GCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCT TACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCTGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGA GCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCC TTTTTTTTTTGCCCCAAAAAAAAAA]
[-] EMBL CF335523 [ TCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCC AAAAAA ]
consensusID : consensus_16610#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 526 fasta sequence
[CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCT-CAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATAAAAAAAAAAAA]
[-] EMBL CF336319 [CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCT CAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATAAAAAAAAAAAA]
[-] EMBL CF298147 [ GGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCTCCTCCTTTGCTCCCGCCCGCCTCTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTACA GAGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGT ]
[-] EMBL CF298416 [ AAACGGGAAGGAGGGGCGTAACGGCGGCTCAGTGAAGGGGTTTGGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTACGGGCT CAGGGGAGGCCGATTATTCA ]
[-] EMBL CF301433 [ GAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGAAAATTTTTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAAAAAAGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATTGTTTGCGGGCT CAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTTTAGTGGATCTAATTATAGCTtaaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16610#1 ----------------------CATGGCCTGAAGGAGTAGAAAC-TTCTGCGGTTCTCCC 37
consensus_16610#2 ------------------------------------------------------------
consensus_16610#0 CGAGCCCTCTTCATCTTCCACACTTATCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCC 60
consensus_16610#1 TCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGG 97
consensus_16610#2 --------------------------CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGG 34
consensus_16610#0 TCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGG 120
**********************************
consensus_16610#1 CGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGA 157
consensus_16610#2 CGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGA 94
consensus_16610#0 CGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGA 180
************************************************************
consensus_16610#1 CGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCT 217
consensus_16610#2 CGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCT 154
consensus_16610#0 CGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCT 240
************************************************************
consensus_16610#1 CCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGC 277
consensus_16610#2 CCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGC 214
consensus_16610#0 CCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGC 300
****** *************** ****** ******************************
consensus_16610#1 CGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTA 337
consensus_16610#2 CGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTA 274
consensus_16610#0 CGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTA 360
************************************************************
consensus_16610#1 GGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCG 397
consensus_16610#2 GGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCG 334
consensus_16610#0 GGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCG 420
************************************************************
consensus_16610#1 TTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATT 457
consensus_16610#2 TTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATT 394
consensus_16610#0 TTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATT 480
************************************************************
consensus_16610#1 CATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGAT 517
consensus_16610#2 CATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGAT 454
consensus_16610#0 CATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGAT 540
************************************************************
consensus_16610#1 GTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAAT 577
consensus_16610#2 GTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAAT 514
consensus_16610#0 GTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAAT 600
************************************************************
consensus_16610#1 ATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCCAAAAAAAATTGCCCCAAAAAAA 637
consensus_16610#2 AAAAAAAAAAAA------------------------------------------------ 526
consensus_16610#0 ATGATGCTTGCATGCAATGAAAATTGAAAAAAAAAAAAAAAAAAAAAAACACT------- 653
* * *
consensus_16610#1 AAA 640
consensus_16610#2 ---
consensus_16610#0 ---
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||