These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 653 fasta sequence [CGAGCCCTCTTCATCTTCCACACTTATCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA-GGGGTTT-GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC-GGGGG-AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT-CA-GGGG-AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAAAAAAAAAAAAAAAAAAAAAAACACT] [+] EMBL AA754402 [CGAGCCCTCTTCATCTTCCACACTTATCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGGGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTA SGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATA ] [+] EMBL AK066716 [ CACTTATCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTT ] [+] EMBL CF319989 [ TCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAACTC GGGGGAAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTNCA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGCGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCT ] [+] EMBL CF298925 [ CTCCTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGGAAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCT ] [+] EMBL AK065774 [ CTCTCCCTCTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTT ] [+] EMBL CF328300 [ CTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCATCAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGC ] [+] EMBL CF334342 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGGTTTGGGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGGAAGGTGGATCCATCGCCGGTGAGCTTNGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGGAAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTG TTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAAAAAAAAAAAAAAAAAAAAAAACACT] [+] EMBL CF279356 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CAGGGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGGTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACAAAA ] [+] EMBL CF311617 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAAaa ] [+] EMBL CF310562 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAAaa ] [+] EMBL CF298146 [ CCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CAGGGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATC ] [-] EMBL CF280338 [ GGAGCAGCGGTAACTCCCCGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCCCCAGCGACGGCTGCAAAACGGGAAGGAGGGGCGTAACGGCGGCTCAGTGAA GGGGTTT GGCGCATTTCCTCCTTTGCTCCCGCCCGCCTTTACCAAATAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCCACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTTTAGGAACCAGCTC GGGGG AGGTGGATCCCTCCCCGGTGAGCTTGGGGGAGGCCCACGATCCGTTGCCCACCAGCT CA GGGG AGGTGGATCATCGTTTGCGGGCTCAGGGGAGGCCCATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTTTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTAAACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTTTAATTTGAATATGATGCTTGCCTGCCATGAAAA AAAAAAAAAAAAAA ] [-] EMBL CF334341 [ AAGCGGGAAGGAGGGGCGTAACGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAAATAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTTTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTTTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTAAACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAAAAAAAAAAA ] [-] EMBL CF319990 [ GCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAA GGGGTTT GGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGACCCTCGAGAGCCCGCATCAGAAGCCACCACCCTTGGGTGGTGACGACGCCCTCGATGATGTGACGATTTCTAGGACCAAACTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTACCCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGCGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAA AAAA AAAAAAAAAAAA ] [-] EMBL CF279357 [ GCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGA AGGAGGTACATCGTCTGCGGGCTCAGAAAAGGCCGATTATTCATCAACAAATATGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCAAAGTTGTTCTTGGTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGGAAATTAACCAAAAA ] [-] EMBL CF299928 [ GACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTC GGGGG AGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCT CA GGGG AGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCCATTAAAA AAAAAAA ] consensusID : consensus_16610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 640 fasta sequence [CATGGCCTGAAGGAGTAGAAA---CTTCTGCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT-GGC--TCGCGGC--AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG-AAGGGGTTTGG-CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG-A-GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCC---AAAAAAAATTGCCCCAAAAAAAAAA] [+] EMBL CF282229 [CATGGCCTGAAGGAGTAGAAA CTTCTGCGGTTCTCCCTCTCCTATCTATCTCTCACCGGTCGGCATGGAGCACCGGTAACTCCACTAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TAGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTATCGGCGGCTCAGAG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGCGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGAGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCATGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGT ] [+] EMBL CF299927 [ GAGTAGAAACTCCTTCTCCGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTA ] [+] EMBL C74851 [ CGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACNCCACGAAAAGGCCCGGCGGCGGTGACNGCAAAGCGAGCAT GGC TCGGGNC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAA CGGGAAGGAGGGGCGTA CGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A AGTNGATCCAT ] [+] EMBL AK104026 [ CGGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATATGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTC ] [+] EMBL CF335522 [ GGTTCTCCCTCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AGGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTT ] [+] EMBL CF301432 [ GTTCTCCCTCTCCTACCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTANCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG AGGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGT ] [+] EMBL AU096091 [ TCTCCTATCTCTCTCTCACCGGTCGGNATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGNCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGNAAGGGGTTTGGCCGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAANAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCNGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCCTTTAAAAAAAA ] [+] EMBL CF336318 [ CTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGC AAGCGGaa ] [+] EMBL OSS12134A [ ATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGGGCC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTA NGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGNCGACCTCGATGATGTNACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGC ] [+] EMBL OSS12051A [ ATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCG NNC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAG GGGAAGGAGGGGCGTA NGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGA ] [+] EMBL CF298415 [ TCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAA GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTG ] [-] EMBL CF310563 [ CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTTTACCAANTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAAaaa ] [-] EMBL CF311618 [ CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAAaaa ] [-] EMBL CF282230 [ AGGCCCGGCGGCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTgaaaaaa ] [+] EMBL CB685325 [ CCCGCCTTCGGTGACTGCAAAGCGAGCAT GGC TCGCGGC AACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGA ] [+] EMBL BI805688 [ cCATGGGCTTTCGCGGCCAAACTCAACAA CGGCCCA CAGCGACGGCT CAAAGCGGGAAGGAGGGGCGTA C GCGGCTCAGTG AAGGGGTTTGG CGCATCTCCTCCTCTGCTCCCGCCCGCCT TACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGCTGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGA GCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCC TTTTTTTTTTGCCCCAAAAAAAAAA] [-] EMBL CF335523 [ TCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGG A GGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCC AAAAAA ] consensusID : consensus_16610#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 526 fasta sequence [CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCT-CAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATAAAAAAAAAAAA] [-] EMBL CF336319 [CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCT CAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAATAAAAAAAAAAAA] [-] EMBL CF298147 [ GGCGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGACGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCTCCTCCTTTGCTCCCGCCCGCCTCTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTACA GAGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGATGTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGT ] [-] EMBL CF298416 [ AAACGGGAAGGAGGGGCGTAACGGCGGCTCAGTGAAGGGGTTTGGCGCATCTCCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGCCGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTACGGGCT CAGGGGAGGCCGATTATTCA ] [-] EMBL CF301433 [ GAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGAAAATTTTTAGGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAAAAAAGGGGAGGCCGACGATCCGTTGCCAACAAGCTCAGGGGAGGTGGATCATTGTTTGCGGGCT CAGGGGAGGCCGATTATTCATCAGCTTGTTTGTAACCTATTGTTTGTTTTAGTGGATCTAATTATAGCTtaaaaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16610#1 ----------------------CATGGCCTGAAGGAGTAGAAAC-TTCTGCGGTTCTCCC 37 consensus_16610#2 ------------------------------------------------------------ consensus_16610#0 CGAGCCCTCTTCATCTTCCACACTTATCCTCTCCTCTCCCTCTCCTTCTCCGGTTCTCCC 60 consensus_16610#1 TCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGG 97 consensus_16610#2 --------------------------CATGGAGCAGCGGTAACTCCACGAAAAGGCCCGG 34 consensus_16610#0 TCTCCTATCTCTCTCTCACCGGTCGGCATGGAGCAGCGGTAACTCCACGAAAAGGCCCGG 120 ********************************** consensus_16610#1 CGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGA 157 consensus_16610#2 CGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGA 94 consensus_16610#0 CGGCGGTGACTGCAAAGCGAGCATGGCTCGCGGCAACTCAACAAAGCGGCCCACCAGCGA 180 ************************************************************ consensus_16610#1 CGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCT 217 consensus_16610#2 CGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCT 154 consensus_16610#0 CGGCTGCAAAGCGGGAAGGAGGGGCGTAGCGGCGGCTCAGTGAAGGGGTTTGGCGCATCT 240 ************************************************************ consensus_16610#1 CCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGC 277 consensus_16610#2 CCTCCTTTGCTCCCGCCCGCCTTTACCAATTAAGCCCATAGTCGACGAGCCTCGAGAGGC 214 consensus_16610#0 CCTCCTCTGCTCCCGCCCGCCTCTACCAACTAAGCCCATAGTCGACGAGCCTCGAGAGGC 300 ****** *************** ****** ****************************** consensus_16610#1 CGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTA 337 consensus_16610#2 CGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTA 274 consensus_16610#0 CGCATCAGAAGCCAACAGCCTTGGGTGGTGACGACGACCTCGATGATGTGACGATTTCTA 360 ************************************************************ consensus_16610#1 GGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCG 397 consensus_16610#2 GGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCG 334 consensus_16610#0 GGAACAAGCTCGGGGGAGGTGGATCCATCGCCGGTGAGCTTGGGGGAGGCCGACGATCCG 420 ************************************************************ consensus_16610#1 TTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATT 457 consensus_16610#2 TTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATT 394 consensus_16610#0 TTGCCAACAAGCTCAGGGGAGGTGGATCATCGTCTGCGGGCTCAGGGGAGGCCGATTATT 480 ************************************************************ consensus_16610#1 CATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGAT 517 consensus_16610#2 CATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGAT 454 consensus_16610#0 CATCAGCTTGTTTGTAACCTATTGTTTGTTCTAGTGGATCTAATTATAGCTGTGTTCGAT 540 ************************************************************ consensus_16610#1 GTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAAT 577 consensus_16610#2 GTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAAT 514 consensus_16610#0 GTTGTTCTTGTTTATACTTGTCTTTTCTTGTTTGTCTATGGATCTGATTCTAATTTGAAT 600 ************************************************************ consensus_16610#1 ATGATGCTTGCATGCAATGAAAATTGAACATTTCCCCCAAAAAAAATTGCCCCAAAAAAA 637 consensus_16610#2 AAAAAAAAAAAA------------------------------------------------ 526 consensus_16610#0 ATGATGCTTGCATGCAATGAAAATTGAAAAAAAAAAAAAAAAAAAAAAACACT------- 653 * * * consensus_16610#1 AAA 640 consensus_16610#2 --- consensus_16610#0 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||