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Oryza sativa
cluster # 1664 cluster # 1664       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1664#0 length = 854 sequences # 1  
consensus_1664#1 length = 852 sequences # 1  

consensusID : consensus_1664#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 854
fasta sequence
                              [GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTGCCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGCTACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGCGTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGACGCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGACATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTTTTAATTACTTTTCCTGCTTAATTAGCCTCTTCTAATGATTTGTTTGGTTCATCTAGATATCAAGTCACATTTTATTACTCTTTAATTCATCGTGTAAAAGTCTAAAAGAACATATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAATATTTTTCCATATGTGAGACTTTTTA]

[+] EMBL AK109150             [GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTGCCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGCTACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGCGTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGACGCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGACATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTTTTAATTACTTTTCCTGCTTAATTAGCCTCTTCTAATGATTTGTTTGGTTCATCTAGATATCAAGTCACATTTTATTACTCTTTAATTCATCGTGTAAAAGTCTAAAAGAACATATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAATATTTTTCCATATGTGAGACTTTTTA]


>consensus_1664#0 GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTG CCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGC TACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGC GTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGAC GACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGG GAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGC AACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGAC GTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGG GCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGAC GCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGAC ATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTT TTAATTACTTTTCCTGCTTAATTAGCCTCTTCTAATGATTTGTTTGGTTCATCTAGATAT CAAGTCACATTTTATTACTCTTTAATTCATCGTGTAAAAGTCTAAAAGAACATATATTAG AAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAATATTTTTCCATA TGTGAGACTTTTTA



consensusID : consensus_1664#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 852
fasta sequence
                              [CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGACGACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTATTTGTTGCAAACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTTCTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTTTTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTTTTTCATATCTCTTCCTAATGTTCTCTACCCATACCCCTTTTCTTTGCCCACATCGCCCTTTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTCAACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCCCCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTTATTCCCCCCCCTCTCTTTCCTCCCC]

[+] EMBL CA757051             [CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGACGACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTATTTGTTGCAAACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTTCTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTTTTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTTTTTCATATCTCTTCCTAATGTTCTCTACCCATACCCCTTTTCTTTGCCCACATCGCCCTTTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTCAACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCCCCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTTATTCCCCCCCCTCTCTTTCCTCCCC]


>consensus_1664#1 CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGA CGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCT CGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTT CGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAA CGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGGGCGTTCGAGTG CGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGACGACGTCGGTAA GGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTATTTGTTGCAAA CACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTTCTTATTTCCTTT CTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTTTTCCCGCCTTTT TTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTTTTTCATATCTCT TCCTAATGTTCTCTACCCATACCCCTTTTCTTTGCCCACATCGCCCTTTCGGTTCCCAGA TTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTCAACTTCTTTTTCC CCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCCCCTTTTTTTCTTT TTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTTATTCCCCCCCCTC TCTTTCCTCCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1664#0      GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTG 60
consensus_1664#1      ------------------------------------------------------------
                                                                                  

consensus_1664#0      CCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGC 120
consensus_1664#1      ------------------------------------------------------------
                                                                                  

consensus_1664#0      TACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGC 180
consensus_1664#1      ------------------------------------------------------------
                                                                                  

consensus_1664#0      GTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGAC 240
consensus_1664#1      -----------CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGAC 49
                                 *************************************************

consensus_1664#0      GACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGG 300
consensus_1664#1      GACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGG 109
                      ************************************************************

consensus_1664#0      GAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGC 360
consensus_1664#1      GAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGC 169
                      ************************************************************

consensus_1664#0      AACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGAC 420
consensus_1664#1      AACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGAC 229
                      ************************************************************

consensus_1664#0      GTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGG 480
consensus_1664#1      GTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGG 289
                      ********************************** ** ******** *************

consensus_1664#0      GCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGAC 540
consensus_1664#1      GCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGAC 349
                      *****************************************  **** *  * *** ***

consensus_1664#0      GCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGAC 600
consensus_1664#1      GACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTA 409
                      * ** *** ***** **** *********** ******** *****  * ***       

consensus_1664#0      ATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTT 660
consensus_1664#1      TTTGTTGCA-AACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTT 468
                       ***  * * ** ****** ** ** ** *  *   *      **   *  *** *  **

consensus_1664#0      TTAATTACTTTTC---CTGCTTAATTAGCCTCTTCTAA-TGATTTGTTTGGTTCATCTAG 716
consensus_1664#1      CTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTT 528
                       * *** * ****   * ***   *** * * ** *   ****** ***  *    **  

consensus_1664#0      ATATCAAGTCACATTTTATTACTCTTTA------ATTCATCGTGTAAAAGTCTAAAAGAA 770
consensus_1664#1      TTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTT 588
                       *  *   *    **** *  ***  *       ******  *    ** * *       

consensus_1664#0      CAT-ATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAAT 829
consensus_1664#1      TTTCATATCTCTTCCTAATGTTC-TCTACCCATACCCCTTTTCTTTGCCCACATCGCCCT 647
                        * ****       ** ***** * * *   *     * * * * * * *    *   *

consensus_1664#0      ATT--TTTCCATATGTGAGACTTTTTA--------------------------------- 854
consensus_1664#1      TTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTC 707
                       *   ** *** ** *    * **  *                                 

consensus_1664#0      ------------------------------------------------------------
consensus_1664#1      AACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCC 767
                                                                                  

consensus_1664#0      ------------------------------------------------------------
consensus_1664#1      CCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTT 827
                                                                                  

consensus_1664#0      -------------------------
consensus_1664#1      ATTCCCCCCCCTCTCTTTCCTCCCC 852
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)