cluster # 1665

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Oryza sativa
cluster # 1665 cluster # 1665 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1665#0 length = 276 sequences # 1

consensus_1665#1 length = 272 sequences # 1

consensusID : consensus_1665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [NCCAGCTCAAAACTGCCAAATATGCTAGCCAATGTNACGATTGGCGGGANGGGAATTCNTACGGCTGCAGTTTTTNANNAAGGCAAAAAGCGCGACTGGCNAGGACNATTTGTGATTTGNNCATAACAAGACGATGAAGATGACCCGACGTCTAGTAACAGTCTTNNNAAGTTGGGCAGTATTNGCATGGAGTNAANAGCCAGAGNATTTAGGNCAGTCNCCCCCANGGCNCNCGGTNTTTGCNTCGNTGTTTCAAGTAACATANNTTGAGAAAAA]

[+] EMBL AT003755             [NCCAGCTCAAAACTGCCAAATATGCTAGCCAATGTNACGATTGGCGGGANGGGAATTCNTACGGCTGCAGTTTTTNANNAAGGCAAAAAGCGCGACTGGCNAGGACNATTTGTGATTTGNNCATAACAAGACGATGAAGATGACCCGACGTCTAGTAACAGTCTTNNNAAGTTGGGCAGTATTNGCATGGAGTNAANAGCCAGAGNATTTAGGNCAGTCNCCCCCANGGCNCNCGGTNTTTGCNTCGNTGTTTCAAGTAACATANNTTGAGAAAAA]




>consensus_1665#0
NCCAGCTCAAAACTGCCAAATATGCTAGCCAATGTNACGATTGGCGGGANGGGAATTCNT
ACGGCTGCAGTTTTTNANNAAGGCAAAAAGCGCGACTGGCNAGGACNATTTGTGATTTGN
NCATAACAAGACGATGAAGATGACCCGACGTCTAGTAACAGTCTTNNNAAGTTGGGCAGT
ATTNGCATGGAGTNAANAGCCAGAGNATTTAGGNCAGTCNCCCCCANGGCNCNCGGTNTT
TGCNTCGNTGTTTCAAGTAACATANNTTGAGAAAAA

consensusID : consensus_1665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [TCAAAACTGCCAAATATGCTAGCCAATGTGACGATTGGCGCGACGGGAATACCTGCGACTGCAGTTTCTGAGAAAGGCAAAAAGCGCGACTGGCAAGGGCGATTTGTGATTTGAACATAACAAGACGATGAAGATGACCCGACGTCTAGTAACAGTCTTGGGAAGTTGGGCAGTATTCGCATGGAGTAAATAGCCAGNGTATCTAGGACAGTCACGACATGNCTAGCGGTATTCGCATCGTTAATTCAAGTAACATAGCTTGAGAAAAAAAA]

[+] EMBL AT003742             [TCAAAACTGCCAAATATGCTAGCCAATGTGACGATTGGCGCGACGGGAATACCTGCGACTGCAGTTTCTGAGAAAGGCAAAAAGCGCGACTGGCAAGGGCGATTTGTGATTTGAACATAACAAGACGATGAAGATGACCCGACGTCTAGTAACAGTCTTGGGAAGTTGGGCAGTATTCGCATGGAGTAAATAGCCAGNGTATCTAGGACAGTCACGACATGNCTAGCGGTATTCGCATCGTTAATTCAAGTAACATAGCTTGAGAAAAAAAA]




>consensus_1665#1
TCAAAACTGCCAAATATGCTAGCCAATGTGACGATTGGCGCGACGGGAATACCTGCGACT
GCAGTTTCTGAGAAAGGCAAAAAGCGCGACTGGCAAGGGCGATTTGTGATTTGAACATAA
CAAGACGATGAAGATGACCCGACGTCTAGTAACAGTCTTGGGAAGTTGGGCAGTATTCGC
ATGGAGTAAATAGCCAGNGTATCTAGGACAGTCACGACATGNCTAGCGGTATTCGCATCG
TTAATTCAAGTAACATAGCTTGAGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1665#0      NCCAGCTCAAAACTGCCAAATATGCTAGCCAATGTNACGATTGGCGGGANGGGAATTCNT 60
consensus_1665#1      ------TCAAAACTGCCAAATATGCTAGCCAATGTGACGATTGGCGCGACGGGAATACCT 54
                            ***************************** ********** ** ****** * *

consensus_1665#0      ACGGCTGCAGTTTTTNANNAAGGCAAAAAGCGCGACTGGCNAGGACNATTTGTGATTTGN 120
consensus_1665#1      GCGACTGCAGTTTCTGAGAAAGGCAAAAAGCGCGACTGGCAAGGGCGATTTGTGATTTGA 114
                       ** ********* * *  ********************* *** * ************ 

consensus_1665#0      NCATAACAAGACGATGAAGATGACCCGACGTCTAGTAACAGTCTTNNNAAGTTGGGCAGT 180
consensus_1665#1      ACATAACAAGACGATGAAGATGACCCGACGTCTAGTAACAGTCTTGGGAAGTTGGGCAGT 174
                       ********************************************   ************

consensus_1665#0      ATTNGCATGGAGTNAANAGCCAGAGNATTTAGGNCAGTCNCCCCCANGGCNCNCGGTNTT 240
consensus_1665#1      ATTCGCATGGAGTAAATAGCCAGNGTATCTAGGACAGTCACGAC-ATGNCTAGCGGTATT 233
                      *** ********* ** ****** * ** **** ***** *  * * * *   **** **

consensus_1665#0      TGCNTCGNTGTTTCAAGTAACATANNTTGAGAAAAA--- 276
consensus_1665#1      CGCATCGTTAATTCAAGTAACATAGCTTGAGAAAAAAAA 272
                       ** *** *  *************  **********