These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1229 fasta sequence [CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTAATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTCGGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAATTTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGCCGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTATCTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTCCAGGCGGCACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTGGAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAACGAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCGCCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGGTTTGTGAATATAGCTCAAGGTTGCTGTGGCACAGGACTTATTGAGACATCCGTCCTTTGCGGCTTCAACGATCATTTGACATGTCAAGATGCTAATTCTTATGTGTTCTTCGATTCAGTCCATCCGTCGGAGAGAACATATCAGATTATAGCTAACAAAATCATTAATACAGATCTTAAATTAGTACTATGATATGTATGTTCCGAGTTTACATGTAATGATAATTGAAATCTATACTGAGATATAAGCTAGTTGAACTTTACTACAGCCATCCACGAAAAAGTGTACGCGATCATTCCTGACCATCTGATCTCAAGATTCAATGGCCAAAATCGATTCCATGC] [+] EMBL AK061026 [CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTAATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTCGGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAATTTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGCCGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTATCTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTCCAGGCGGCACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTGGAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAACGAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCGCCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGGTTTGTGAATATAGCTCAAGGTTGCTGTGGCACAGGACTTATTGAGACATCCGTCCTTTGCGGCTTCAACGATCATTTGACATGTCAAGATGCTAATTCTTATGTGTTCTTCGATTCAGTCCATCCGTCGGAGAGAACATATCAGATTATAGCTAACAAAATCATTAATACAGATCTTAAATTAGTACTATGATATGTATGTTCCGAGTTTACATGTAATGATAATTGAAATCTATACTGAGATATAAGCTAGTTGAACTTTACTACAGCCATCCACGAAAAAGTGTACGCGATCATTCCTGACCATCTGATCTCAAGATTCAATGGCCAAAATCGATTCCATGC] consensusID : consensus_1666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1058 fasta sequence [CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTAATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTCGGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAATTTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGCCGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTATCTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTTCAGGCGGCACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTGGAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAACGAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCGCCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGTTAGTGCTCAATCTTGCTCGTGTTTTTTATTTTTCATTTTTAAGACCTAAGGTCCGTTGAAAATAAATCCAATAGATTATGTGTTTTATAATTTTATTTGAAACAACCCGTATTAGATAGTGCGATGTTTCTATTGATATAGCATGAAAAAATACAAATCTATAGTCCTGGGTG] [+] EMBL AK060124 [CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTAATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTCGGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAATTTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGCCGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTATCTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTTCAGGCGGCACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTGGAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAACGAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCGCCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGTTAGTGCTCAATCTTGCTCGTGTTTTTTATTTTTCATTTTTAAGACCTAAGGTCCGTTGAAAATAAATCCAATAGATTATGTGTTTTATAATTTTATTTGAAACAACCCGTATTAGATAGTGCGATGTTTCTATTGATATAGCATGAAAAAATACAAATCTATAGTCCTGGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1666#0 CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTA 60 consensus_1666#1 CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTA 60 ************************************************************ consensus_1666#0 ATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTC 120 consensus_1666#1 ATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTC 120 ************************************************************ consensus_1666#0 GGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAAT 180 consensus_1666#1 GGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAAT 180 ************************************************************ consensus_1666#0 TTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGC 240 consensus_1666#1 TTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGC 240 ************************************************************ consensus_1666#0 CGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTAT 300 consensus_1666#1 CGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTAT 300 ************************************************************ consensus_1666#0 CTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTCCAGGCGGC 360 consensus_1666#1 CTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTTCAGGCGGC 360 *************************************************** ******** consensus_1666#0 ACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTG 420 consensus_1666#1 ACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTG 420 ************************************************************ consensus_1666#0 GAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAAC 480 consensus_1666#1 GAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAAC 480 ************************************************************ consensus_1666#0 GAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAAC 540 consensus_1666#1 GAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAAC 540 ************************************************************ consensus_1666#0 TACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTC 600 consensus_1666#1 TACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTC 600 ************************************************************ consensus_1666#0 GTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATA 660 consensus_1666#1 GTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATA 660 ************************************************************ consensus_1666#0 TTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCG 720 consensus_1666#1 TTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCG 720 ************************************************************ consensus_1666#0 CCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACG 780 consensus_1666#1 CCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACG 780 ************************************************************ consensus_1666#0 GAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACT 840 consensus_1666#1 GAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACT 840 ************************************************************ consensus_1666#0 TACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGGTTTGTGAATATAGCT 900 consensus_1666#1 TACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGG-TTAGTG-------CT 892 ******************************************** ** *** ** consensus_1666#0 CAAGGTTGCTGTGGCACAGGACTTATTGAGACATCCGTCCTTTGCGGCTTCAACGATCAT 960 consensus_1666#1 CAATCTTGCT----CGTGTTTTTTATT------TTTCATTTTTAAGACCT-AAGGTCCGT 941 *** ***** * ***** * *** * * * ** * * * consensus_1666#0 TTGACATGTCAAGATGCTAATTCTTATGTGTTCTTCGATTCAGTCCATCCGTCGGAGAGA 1020 consensus_1666#1 TGAAAAT----AAATCCAATAGATTATGTGTTTTATAATTTTATTTG------AAACAAC 991 * * ** * ** * * ********* * *** * * * consensus_1666#0 ACATATCAGATTATAGCTAACAAAATCATTAATACAGATCTTAAATTAGTACTATGATAT 1080 consensus_1666#1 CCGTATTAGATAGTG--CGATGTTTCTATTGATATAG--CATGAAAAAATACAA--ATCT 1045 * *** **** * * *** *** ** * * ** * *** * ** * consensus_1666#0 GTATGTTCCGAGTTTACATGTAATGATAATTGAAATCTATACTGAGATATAAGCTAGTTG 1140 consensus_1666#1 ATA-GTCCTGGGTG---------------------------------------------- 1058 ** ** * * ** consensus_1666#0 AACTTTACTACAGCCATCCACGAAAAAGTGTACGCGATCATTCCTGACCATCTGATCTCA 1200 consensus_1666#1 ------------------------------------------------------------ consensus_1666#0 AGATTCAATGGCCAAAATCGATTCCATGC 1229 consensus_1666#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||