cluster # 1689

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Oryza sativa
cluster # 1689 cluster # 1689 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1689#0 length = 1691 sequences # 1

consensus_1689#1 length = 468 sequences # 1

consensusID : consensus_1689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1691
fasta sequence

                              [TAGAAATATCTTTAAAATTATTGCAATGGACACCTGCTTTTTTCTAACATGACCAACCTCCTTATATTACAATTGTAATCTAAAAAACTAAATGTTTCTAAAGCATATGCAGTTATTAATATTTTCACATCTGCCCCTCAAGTAGTTTCGGATTCAGAAGGTTTGCTTTCTATGTGCAGATGTCGTATTTCCATGTGATGGTTAACCTTTAGTTGATTTTGCCTTTTGAGCAGTTTTTTTTTTATCATCTTTTCTTCTATTGATAAGGAGCCATGTTCAAGGAGAAGCCAAACCTTAGCTCAAGCAAACCGGCTTTGTATCTTTGAAGAATAGAATCAGGGATGGATCCATTGAGCTGGTTATTAGACAAGTCACTGAAAAAACAGCACTTCAAATCATTCATTCATTTAAATTTTATATTAGGCACTAAAGATCCCATCAATTGCTGTAGAGACTTACATAACAGTGAGGGAATTTACTTGATAGTCTGGAATGGTGCCTGTCAGGTTGTTGTGTGATAAATCCCTGCATGTTTTTAGATGTTTAGGATTGCATCGATGTCCACCCAATTTCATTTAGTTTGTGAATGGTAGATAGCACTTACAATTTCTTCAGTGATGACATTTTCATGAATGATATTTCTAACTCTCCTTGCAGACCGCTGCCAGATAGATTTCTGCATAGCAACTCGTTTTAACATAGTAATAATATCCACCATCATTTTTTTTTTCAAAACCAAAATGTTTTGTTCTTACATTTCAACAATCCTTGGGTTCTGGCCACCATTAGGGTAGGTGCAAGTCAAACCATTCCAGTTTTTGATTACCATGTACTTCTCTTTGATTGTTTTCATGGAGTCAACTAAGCAAATGGTACAAACAACACAGAATAGGTGTCAATATATGATGCTTCAGTCAGCTTGGTCTCAGGATAATCTACATTAGCATTGATGTGTTTACTGTATGTTATGCAACAGGTTCCTTACAAATTGGAATGAGTAATAGTGAAGCCAATTGACGTACCATCACTTGAAGCAGTGGTGAAGTTCTCCACCTGGACACGGGAGTACACCTCATATGCGTTAATAAGAGGTGGTAGCTGTGAGTCTGGGGTCTTGCGAAGCTGAAAATATGCCCTTCTGCCTTTGCGCAAGAACCAGTTGTGGAACATGGAGCTCAGGAATGACGGTGGGCTGAAGTTGGAGAACAGTGCTTGCGGTTCATCGACATTGTAGATGTCAAAAATTCTCTTTGAACCATTATTGCCGAGTTCAACAAAGTGAAAGACTGGAAGAAGCTCTAGGTCTGTTGCGAGAGAGTTACTGGCACTAACGCTGATGTTGAGCCAAGAGAAGTTTCCGTTTATGGTTGAAGCGCTTCCCAGAATGGCTGGAGGAAGCCCAAAGGTGTCAATATTAGGAAGTTCAGCCACCTTGCCGTTGCTACTCTTATTAACCCATGGAAAGGTGTGCATGGTAAAGACCCAGCCCTCCCAGAAGCGATCATACTGATCCGTTGGGAATCTGACCATGACAGAGGACAAAACAAAGAAAAGATTATGCCAACGTAAATATAACTGGATTCAGCATTGTCATTGCCGTTGTTTTTGCTAAGCTTTAAGGCTTATGGCTATTGATGTACTCGCTCCGGTCATAAATATTTGATATTTGGAGTAAATTTTGATCATATTTT]

[+] EMBL AK063466             [TAGAAATATCTTTAAAATTATTGCAATGGACACCTGCTTTTTTCTAACATGACCAACCTCCTTATATTACAATTGTAATCTAAAAAACTAAATGTTTCTAAAGCATATGCAGTTATTAATATTTTCACATCTGCCCCTCAAGTAGTTTCGGATTCAGAAGGTTTGCTTTCTATGTGCAGATGTCGTATTTCCATGTGATGGTTAACCTTTAGTTGATTTTGCCTTTTGAGCAGTTTTTTTTTTATCATCTTTTCTTCTATTGATAAGGAGCCATGTTCAAGGAGAAGCCAAACCTTAGCTCAAGCAAACCGGCTTTGTATCTTTGAAGAATAGAATCAGGGATGGATCCATTGAGCTGGTTATTAGACAAGTCACTGAAAAAACAGCACTTCAAATCATTCATTCATTTAAATTTTATATTAGGCACTAAAGATCCCATCAATTGCTGTAGAGACTTACATAACAGTGAGGGAATTTACTTGATAGTCTGGAATGGTGCCTGTCAGGTTGTTGTGTGATAAATCCCTGCATGTTTTTAGATGTTTAGGATTGCATCGATGTCCACCCAATTTCATTTAGTTTGTGAATGGTAGATAGCACTTACAATTTCTTCAGTGATGACATTTTCATGAATGATATTTCTAACTCTCCTTGCAGACCGCTGCCAGATAGATTTCTGCATAGCAACTCGTTTTAACATAGTAATAATATCCACCATCATTTTTTTTTTCAAAACCAAAATGTTTTGTTCTTACATTTCAACAATCCTTGGGTTCTGGCCACCATTAGGGTAGGTGCAAGTCAAACCATTCCAGTTTTTGATTACCATGTACTTCTCTTTGATTGTTTTCATGGAGTCAACTAAGCAAATGGTACAAACAACACAGAATAGGTGTCAATATATGATGCTTCAGTCAGCTTGGTCTCAGGATAATCTACATTAGCATTGATGTGTTTACTGTATGTTATGCAACAGGTTCCTTACAAATTGGAATGAGTAATAGTGAAGCCAATTGACGTACCATCACTTGAAGCAGTGGTGAAGTTCTCCACCTGGACACGGGAGTACACCTCATATGCGTTAATAAGAGGTGGTAGCTGTGAGTCTGGGGTCTTGCGAAGCTGAAAATATGCCCTTCTGCCTTTGCGCAAGAACCAGTTGTGGAACATGGAGCTCAGGAATGACGGTGGGCTGAAGTTGGAGAACAGTGCTTGCGGTTCATCGACATTGTAGATGTCAAAAATTCTCTTTGAACCATTATTGCCGAGTTCAACAAAGTGAAAGACTGGAAGAAGCTCTAGGTCTGTTGCGAGAGAGTTACTGGCACTAACGCTGATGTTGAGCCAAGAGAAGTTTCCGTTTATGGTTGAAGCGCTTCCCAGAATGGCTGGAGGAAGCCCAAAGGTGTCAATATTAGGAAGTTCAGCCACCTTGCCGTTGCTACTCTTATTAACCCATGGAAAGGTGTGCATGGTAAAGACCCAGCCCTCCCAGAAGCGATCATACTGATCCGTTGGGAATCTGACCATGACAGAGGACAAAACAAAGAAAAGATTATGCCAACGTAAATATAACTGGATTCAGCATTGTCATTGCCGTTGTTTTTGCTAAGCTTTAAGGCTTATGGCTATTGATGTACTCGCTCCGGTCATAAATATTTGATATTTGGAGTAAATTTTGATCATATTTT]




>consensus_1689#0
TAGAAATATCTTTAAAATTATTGCAATGGACACCTGCTTTTTTCTAACATGACCAACCTC
CTTATATTACAATTGTAATCTAAAAAACTAAATGTTTCTAAAGCATATGCAGTTATTAAT
ATTTTCACATCTGCCCCTCAAGTAGTTTCGGATTCAGAAGGTTTGCTTTCTATGTGCAGA
TGTCGTATTTCCATGTGATGGTTAACCTTTAGTTGATTTTGCCTTTTGAGCAGTTTTTTT
TTTATCATCTTTTCTTCTATTGATAAGGAGCCATGTTCAAGGAGAAGCCAAACCTTAGCT
CAAGCAAACCGGCTTTGTATCTTTGAAGAATAGAATCAGGGATGGATCCATTGAGCTGGT
TATTAGACAAGTCACTGAAAAAACAGCACTTCAAATCATTCATTCATTTAAATTTTATAT
TAGGCACTAAAGATCCCATCAATTGCTGTAGAGACTTACATAACAGTGAGGGAATTTACT
TGATAGTCTGGAATGGTGCCTGTCAGGTTGTTGTGTGATAAATCCCTGCATGTTTTTAGA
TGTTTAGGATTGCATCGATGTCCACCCAATTTCATTTAGTTTGTGAATGGTAGATAGCAC
TTACAATTTCTTCAGTGATGACATTTTCATGAATGATATTTCTAACTCTCCTTGCAGACC
GCTGCCAGATAGATTTCTGCATAGCAACTCGTTTTAACATAGTAATAATATCCACCATCA
TTTTTTTTTTCAAAACCAAAATGTTTTGTTCTTACATTTCAACAATCCTTGGGTTCTGGC
CACCATTAGGGTAGGTGCAAGTCAAACCATTCCAGTTTTTGATTACCATGTACTTCTCTT
TGATTGTTTTCATGGAGTCAACTAAGCAAATGGTACAAACAACACAGAATAGGTGTCAAT
ATATGATGCTTCAGTCAGCTTGGTCTCAGGATAATCTACATTAGCATTGATGTGTTTACT
GTATGTTATGCAACAGGTTCCTTACAAATTGGAATGAGTAATAGTGAAGCCAATTGACGT
ACCATCACTTGAAGCAGTGGTGAAGTTCTCCACCTGGACACGGGAGTACACCTCATATGC
GTTAATAAGAGGTGGTAGCTGTGAGTCTGGGGTCTTGCGAAGCTGAAAATATGCCCTTCT
GCCTTTGCGCAAGAACCAGTTGTGGAACATGGAGCTCAGGAATGACGGTGGGCTGAAGTT
GGAGAACAGTGCTTGCGGTTCATCGACATTGTAGATGTCAAAAATTCTCTTTGAACCATT
ATTGCCGAGTTCAACAAAGTGAAAGACTGGAAGAAGCTCTAGGTCTGTTGCGAGAGAGTT
ACTGGCACTAACGCTGATGTTGAGCCAAGAGAAGTTTCCGTTTATGGTTGAAGCGCTTCC
CAGAATGGCTGGAGGAAGCCCAAAGGTGTCAATATTAGGAAGTTCAGCCACCTTGCCGTT
GCTACTCTTATTAACCCATGGAAAGGTGTGCATGGTAAAGACCCAGCCCTCCCAGAAGCG
ATCATACTGATCCGTTGGGAATCTGACCATGACAGAGGACAAAACAAAGAAAAGATTATG
CCAACGTAAATATAACTGGATTCAGCATTGTCATTGCCGTTGTTTTTGCTAAGCTTTAAG
GCTTATGGCTATTGATGTACTCGCTCCGGTCATAAATATTTGATATTTGGAGTAAATTTT
GATCATATTTT

consensusID : consensus_1689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [AGAGTAGTTCCGTTTATGTTGAAGCGTTTCCCAGGATGTCTTGAGGAAGCCCAAGGTGTCAATATTAGGAAGTGCAGCCACCTTGCCGTTGCTACTCATATTAACCCATGGAAAGGTGTTATTGTAAAAGACCCAGCTCTCCCAGAAGCGATCAGAAGGATCTGTTGGAAATCTGACCATGACAGTGATGATTATGACCAAACGAAGAAAAAAGAAGTGCCCATGTAAATAGCATGCTTCAGCATTGTTATCTCCGTTGTTTTTGTTAGGCTTTGAGGCTTATGATTGTACAGTACCCATTTATTCAGCTATAACGAGATGTACGGATAGTACGGGGGTTGTAGAAACCGGCAGTTAGTTTCCATCTAAGAATCTAGTCTTCTTGTGTTCTTGTAGTTGATCATATTTGTAAAAGTTTAGTTTCTCGAGACTATTATATAAAAATCATATCACTAAATTTTTAAAAAA]

[+] EMBL BM038494             [AGAGTAGTTCCGTTTATGTTGAAGCGTTTCCCAGGATGTCTTGAGGAAGCCCAAGGTGTCAATATTAGGAAGTGCAGCCACCTTGCCGTTGCTACTCATATTAACCCATGGAAAGGTGTTATTGTAAAAGACCCAGCTCTCCCAGAAGCGATCAGAAGGATCTGTTGGAAATCTGACCATGACAGTGATGATTATGACCAAACGAAGAAAAAAGAAGTGCCCATGTAAATAGCATGCTTCAGCATTGTTATCTCCGTTGTTTTTGTTAGGCTTTGAGGCTTATGATTGTACAGTACCCATTTATTCAGCTATAACGAGATGTACGGATAGTACGGGGGTTGTAGAAACCGGCAGTTAGTTTCCATCTAAGAATCTAGTCTTCTTGTGTTCTTGTAGTTGATCATATTTGTAAAAGTTTAGTTTCTCGAGACTATTATATAAAAATCATATCACTAAATTTTTAAAAAA]




>consensus_1689#1
AGAGTAGTTCCGTTTATGTTGAAGCGTTTCCCAGGATGTCTTGAGGAAGCCCAAGGTGTC
AATATTAGGAAGTGCAGCCACCTTGCCGTTGCTACTCATATTAACCCATGGAAAGGTGTT
ATTGTAAAAGACCCAGCTCTCCCAGAAGCGATCAGAAGGATCTGTTGGAAATCTGACCAT
GACAGTGATGATTATGACCAAACGAAGAAAAAAGAAGTGCCCATGTAAATAGCATGCTTC
AGCATTGTTATCTCCGTTGTTTTTGTTAGGCTTTGAGGCTTATGATTGTACAGTACCCAT
TTATTCAGCTATAACGAGATGTACGGATAGTACGGGGGTTGTAGAAACCGGCAGTTAGTT
TCCATCTAAGAATCTAGTCTTCTTGTGTTCTTGTAGTTGATCATATTTGTAAAAGTTTAG
TTTCTCGAGACTATTATATAAAAATCATATCACTAAATTTTTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1689#0      TAGAAATATCTTTAAAATTATTGCAATGGACACCTGCTTTTTTCTAACATGACCAACCTC 60
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      CTTATATTACAATTGTAATCTAAAAAACTAAATGTTTCTAAAGCATATGCAGTTATTAAT 120
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      ATTTTCACATCTGCCCCTCAAGTAGTTTCGGATTCAGAAGGTTTGCTTTCTATGTGCAGA 180
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TGTCGTATTTCCATGTGATGGTTAACCTTTAGTTGATTTTGCCTTTTGAGCAGTTTTTTT 240
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TTTATCATCTTTTCTTCTATTGATAAGGAGCCATGTTCAAGGAGAAGCCAAACCTTAGCT 300
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      CAAGCAAACCGGCTTTGTATCTTTGAAGAATAGAATCAGGGATGGATCCATTGAGCTGGT 360
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TATTAGACAAGTCACTGAAAAAACAGCACTTCAAATCATTCATTCATTTAAATTTTATAT 420
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TAGGCACTAAAGATCCCATCAATTGCTGTAGAGACTTACATAACAGTGAGGGAATTTACT 480
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TGATAGTCTGGAATGGTGCCTGTCAGGTTGTTGTGTGATAAATCCCTGCATGTTTTTAGA 540
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TGTTTAGGATTGCATCGATGTCCACCCAATTTCATTTAGTTTGTGAATGGTAGATAGCAC 600
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TTACAATTTCTTCAGTGATGACATTTTCATGAATGATATTTCTAACTCTCCTTGCAGACC 660
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      GCTGCCAGATAGATTTCTGCATAGCAACTCGTTTTAACATAGTAATAATATCCACCATCA 720
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TTTTTTTTTTCAAAACCAAAATGTTTTGTTCTTACATTTCAACAATCCTTGGGTTCTGGC 780
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      CACCATTAGGGTAGGTGCAAGTCAAACCATTCCAGTTTTTGATTACCATGTACTTCTCTT 840
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TGATTGTTTTCATGGAGTCAACTAAGCAAATGGTACAAACAACACAGAATAGGTGTCAAT 900
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      ATATGATGCTTCAGTCAGCTTGGTCTCAGGATAATCTACATTAGCATTGATGTGTTTACT 960
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      GTATGTTATGCAACAGGTTCCTTACAAATTGGAATGAGTAATAGTGAAGCCAATTGACGT 1020
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      ACCATCACTTGAAGCAGTGGTGAAGTTCTCCACCTGGACACGGGAGTACACCTCATATGC 1080
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      GTTAATAAGAGGTGGTAGCTGTGAGTCTGGGGTCTTGCGAAGCTGAAAATATGCCCTTCT 1140
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      GCCTTTGCGCAAGAACCAGTTGTGGAACATGGAGCTCAGGAATGACGGTGGGCTGAAGTT 1200
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      GGAGAACAGTGCTTGCGGTTCATCGACATTGTAGATGTCAAAAATTCTCTTTGAACCATT 1260
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      ATTGCCGAGTTCAACAAAGTGAAAGACTGGAAGAAGCTCTAGGTCTGTTGCGAGAGAGTT 1320
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      ACTGGCACTAACGCTGATGTTGAGCCAAGAGAAGTTTCCGTTTATGGTTGAAGCGCTTCC 1380
consensus_1689#1      ---------------------------AGAGTAGTT-CCGTTTATG-TTGAAGCGTTTCC 31
                                                 **** **** ********* ******** ****

consensus_1689#0      CAGAATGGCTGGAGGAAGCCCAAAGGTGTCAATATTAGGAAGTTCAGCCACCTTGCCGTT 1440
consensus_1689#1      CAGGATGTCTTGAGGAAGCCCAA-GGTGTCAATATTAGGAAGTGCAGCCACCTTGCCGTT 90
                      *** *** ** ************ ******************* ****************

consensus_1689#0      GCTACTCTTATTAACCCATGGAAAGGTGTGCATGGTAAAGACCCAGCCCTCCCAGAAGCG 1500
consensus_1689#1      GCTACTCATATTAACCCATGGAAAGGTGTTATTGTAAAAGACCCAGCTCTCCCAGAAGCG 150
                      ******* *********************   **  *********** ************

consensus_1689#0      ATCATACTGATCCGTTGGGAATCTGACCATGACAGAG--------GACAAAACAAAGAAA 1552
consensus_1689#1      ATCAGAAGGATCTGTTGGAAATCTGACCATGACAGTGATGATTATGACCAAACGAAGAAA 210
                      **** *  **** ***** **************** *        *** **** ******

consensus_1689#0      AGATTA-TGCCAACGTAAATATAACTGGATTCAGCATTGTCATTGCCGTTGTTTTTGCTA 1611
consensus_1689#1      AAAGAAGTGCCCATGTAAATA--GCATGCTTCAGCATTGTTATCTCCGTTGTTTTTGTTA 268
                      * *  * **** * *******   *  * *********** **  ************ **

consensus_1689#0      AGCTTTAAGGCTTATGGCTATTGATGTACTCGCTCCGGTCATAAATATTTGATATTTGGA 1671
consensus_1689#1      GGCTTTGAGGCTTATGATTGTACA-GTACCCATTTATTCAGCTATAACGAGATGTACGGA 327
                       ***** *********  * *  * **** *  *         *  *   *** *  ***

consensus_1689#0      GTAAATTTTGATCATATTTT---------------------------------------- 1691
consensus_1689#1      TAGTACGGGGGTTGTAGAAACCGGCAGTTAGTTTCCATCTAAGAATCTAGTCTTCTTGTG 387
                          *    * *  **                                            

consensus_1689#0      ------------------------------------------------------------
consensus_1689#1      TTCTTGTAGTTGATCATATTTGTAAAAGTTTAGTTTCTCGAGACTATTATATAAAAATCA 447
                                                                                  

consensus_1689#0      ---------------------
consensus_1689#1      TATCACTAAATTTTTAAAAAA 468