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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1429 fasta sequence
[CCCCTTCCATCTCCTCTTCTCCCCGATCTCGCTGCTTCCAATCTCAGATCAACTCAAAGCTTTCCAAACGAATCCTCTGTTTCCTTCCAGAAACATCGACTTCTTGGGAGGTTTCTGATCGATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACACCGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTGACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCCGGGAGTGCGCACGGCGACACGCGCGCTGGCGCGGTGCGTGCAGGAGCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGAGGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACCAGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCGGAGGCTAAGAGTTGAAATGGCATTGCCATCTGCTTCAAGCGAATCCGATTTCATGCATGTTTCAAAGAAGACAAGGTGCTCTCCAAGGTTGAACAAGGGCTCAGCTTCACCCCGACTTGACAAATCTAACACTGCTCATTCCAACAAGAAGACATGTGCAATAAAACCCACTGTACATCGCAATGGTCCTATGGGAAAATCAAAATGCGCTTGCAAAAAAGAGTTGAAACTAGACAATGAAAATGCGGACTACATGAAAGAATATCGTAGGGAGCTATGCAAAAGGTTGCTGTACCATTGCTTCAACGACTTACATCCAAAACGTCGTTTCTAAGCTTCAGAACCAATATGCTCATTTGGTTCAAGCAGTGTTGGATGTGTGCTTAGTCCATTTTTGTAGCCCCCTCCCTCCCTCTGCCCCAACCAACATATGTAACAAGTCAAGTTTCAGAACTGTGTATGTGGCTACTGTTTTTGTCTTAAACTGGAAGGTTGTGAAGGGCACAACAATCAAATGACATGAACTGTGTATGTGGCTACTGTTTTCATGTACATATATGTTGGTAAA]
[+] EMBL AK110964 [CCCCTTCCATCTCCTCTTCTCCCCGATCTCGCTGCTTCCAATCTCAGATCAACTCAAAGCTTTCCAAACGAATCCTCTGTTTCCTTCCAGAAACATCGACTTCTTGGGAGGTTTCTGATCGATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACACCGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTGACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCCGGGAGTGCGCACGGCGACACGCGCGCTGGCGCGGTGCGTGCAGGAGCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGAGGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACCAGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCGGAGGCTAAGAGTTGAAATGGCATTGCCATCTGCTTCAAGCGAATCCGATTTCATGCATGTTTCAAAGAAGACAAGGTGCTCTCCAAGGTTGAACAAGGGCTCAGCTTCACCCCGACTTGACAAATCTAACACTGCTCATTCCAACAAGAAGACATGTGCAATAAAACCCACTGTACATCGCAATGGTCCTATGGGAAAATCAAAATGCGCTTGCAAAAAAGAGTTGAAACTAGACAATGAAAATGCGGACTACATGAAAGAATATCGTAGGGAGCTATGCAAAAGGTTGCTGTACCATTGCTTCAACGACTTACATCCAAAACGTCGTTTCTAAGCTTCAGAACCAATATGCTCATTTGGTTCAAGCAGTGTTGGATGTGTGCTTAGTCCATTTTTGTAGCCCCCTCCCTCCCTCTGCCCCAACCAACATATGTAACAAGTCAAGTTTCAGAACTGTGTATGTGGCTACTGTTTTTGTCTTAAACTGGAAGGTTGTGAAGGGCACAACAATCAAATGACATGAACTGTGTATGTGGCTACTGTTTTCATGTACATATATGTTGGTAAA]
consensusID : consensus_1694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence
[CGCGGCTTCCAATCTCAGATCAACTCGAAGCTTTCCAAACGAATCCCCGCTTTCCTTCCAGAACCATCGCTTCTTGACTTCTTGGGAGCTTCTGGATTCTGATCTATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGTGGAGATCCCGGTCACCGGCGACGGGGCTTGTCCTGATGGCGGGAACGCGGAGGTCGCCGCGTTTCTTGACAAGGCGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCCGCGTCCGCCGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCGCGGCGGCCGTGCAGCTCCGGGTCTGCGCCTACTGGCGCGCGTCGCGGCGGCTGCGCCGGGAGCGCGGCGACGCGCGCGCGCTGGCGCGGNGCGTGCAGGAGCTCCGGATGAAGGGTGCGGTGCACAACCTGTAGCAGGACTCCCAGACAGGGGTGACCAGGCCCATGTGTCGCACTTTTGCGGTCCCCTCGTCTTTTGACCCTCCAGCATCGGAANCNA]
[+] EMBL CA756958 [CGCGGCTTCCAATCTCAGATCAACTCGAAGCTTTCCAAACGAATCCCCGCTTTCCTTCCAGAACCATCGCTTCTTGACTTCTTGGGAGCTTCTGGATTCTGATCTATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGTGGAGATCCCGGTCACCGGCGACGGGGCTTGTCCTGATGGCGGGAACGCGGAGGTCGCCGCGTTTCTTGACAAGGCGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCCGCGTCCGCCGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCGCGGCGGCCGTGCAGCTCCGGGTCTGCGCCTACTGGCGCGCGTCGCGGCGGCTGCGCCGGGAGCGCGGCGACGCGCGCGCGCTGGCGCGGNGCGTGCAGGAGCTCCGGATGAAGGGTGCGGTGCACAACCTGTAGCAGGACTCCCAGACAGGGGTGACCAGGCCCATGTGTCGCACTTTTGCGGTCCCCTCGTCTTTTGACCCTCCAGCATCGGAANCNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1694#0 CCCCTTCCATCTCCTCTTCTCCCCGATCTCGCTGCTTCCAATCTCAGATCAACTCAAAGC 60
consensus_1694#1 -----------------------------CGCGGCTTCCAATCTCAGATCAACTCGAAGC 31
*** ********************** ****
consensus_1694#0 TTTCCAAACGAATCCTCTGTTTCCTTCCAGAAACATCG-------ACTTCTTGGGAGGTT 113
consensus_1694#1 TTTCCAAACGAATCCCCGCTTTCCTTCCAGAACCATCGCTTCTTGACTTCTTGGGAGCTT 91
*************** * ************* ***** ************ **
consensus_1694#0 ------TCTGATCGATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACAC 167
consensus_1694#1 CTGGATTCTGATCTATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGTGGAGATCC 151
******* ************************************* ***** *
consensus_1694#0 CGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTG 227
consensus_1694#1 CGGTCACCGGCGACGGGGCTTGTCCTGATGGCGGGAACGCGGAGGTCGCCGCGTTTCTTG 211
************** ******* ***** ********* *********************
consensus_1694#0 ACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCC 287
consensus_1694#1 ACAAGGCGG---------------------------CGGAGGCGGAGTCTTCCGGGAGCC 244
********* ************************
consensus_1694#0 ATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGC 347
consensus_1694#1 ATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGC 304
************************************************************
consensus_1694#0 GGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGC 407
consensus_1694#1 GGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGC 364
************************************************************
consensus_1694#0 GCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGC 467
consensus_1694#1 GCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGC 424
************************************************************
consensus_1694#0 TCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGG 527
consensus_1694#1 TCCTCTTCGCCGCCTCCGTGTCCGCGTCCGCC------------GTCTCGCCGCCCGCGG 472
********************** ******** ****************
consensus_1694#0 AGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCT 587
consensus_1694#1 AGCAGCGCGCCGCCTGTTGCAGC--------AGGTGGTGGGTGCCGTCGTCCCTGTCGCT 524
*********************** *****************************
consensus_1694#0 GGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCC----------- 636
consensus_1694#1 GGTCGCGTCCCTCGCGCTCGCGGCGGCCGTGCAGCTCCGGGTCTGCGCCTACTGGCGCGC 584
******************* *****************************
consensus_1694#0 ------GGGAGTGCGC-------ACGGCGACACGCGCGC--TGGCGCGGTGCGTGCAGGA 681
consensus_1694#1 GTCGCGGCGGCTGCGCCGGGAGCGCGGCGACGCGCGCGCGCTGGCGCGGNGCGTGCAGGA 644
* * ***** ******* ******* ******** **********
consensus_1694#0 GCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGA 741
consensus_1694#1 GCTCCGGATGAAGGGTGCGGTGCACAACCTGTAGCAGGACTCCCAG-ACAGGGGTGACCA 703
*************** **** * * ***** **** * *** ** ******** *
consensus_1694#0 GGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACC 801
consensus_1694#1 GGCCCATGTGTCGCACTTTTGCGGTCCCCTCGTCTTTTGACC--CTCCAGCATCGGAANC 761
** *** *** ** * * ** * ** * * * ** *** * * * *
consensus_1694#0 AGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCG 861
consensus_1694#1 NA---------------------------------------------------------- 763
consensus_1694#0 GAGGCTAAGAGTTGAAATGGCATTGCCATCTGCTTCAAGCGAATCCGATTTCATGCATGT 921
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 TTCAAAGAAGACAAGGTGCTCTCCAAGGTTGAACAAGGGCTCAGCTTCACCCCGACTTGA 981
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 CAAATCTAACACTGCTCATTCCAACAAGAAGACATGTGCAATAAAACCCACTGTACATCG 1041
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 CAATGGTCCTATGGGAAAATCAAAATGCGCTTGCAAAAAAGAGTTGAAACTAGACAATGA 1101
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 AAATGCGGACTACATGAAAGAATATCGTAGGGAGCTATGCAAAAGGTTGCTGTACCATTG 1161
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 CTTCAACGACTTACATCCAAAACGTCGTTTCTAAGCTTCAGAACCAATATGCTCATTTGG 1221
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 TTCAAGCAGTGTTGGATGTGTGCTTAGTCCATTTTTGTAGCCCCCTCCCTCCCTCTGCCC 1281
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 CAACCAACATATGTAACAAGTCAAGTTTCAGAACTGTGTATGTGGCTACTGTTTTTGTCT 1341
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 TAAACTGGAAGGTTGTGAAGGGCACAACAATCAAATGACATGAACTGTGTATGTGGCTAC 1401
consensus_1694#1 ------------------------------------------------------------
consensus_1694#0 TGTTTTCATGTACATATATGTTGGTAAA 1429
consensus_1694#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||