These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1622 fasta sequence [ATAACACATTACATGCATTTGCAAGCCATACGCTCTCTGTAATATGGATACCAAATTGGGAGCGCTTGCTCTCATGCTCCCGCTTCTACTGCTGATTTCCGCTACTCGCGTAGCCTACGGCGGCATCCAACCCACGCCGCCTCCCGCGAGCTTCCAAGCCGCCTTGGTCCGCATCGAGCCCGCAGGCATCAACTACACGCGCGCCGTGCAGCGCTCCCGCTCCCGCCTGTCCATGCTCGCCGCCAGAGCGGTGTCCAACGCGGGGGCGGCGCCGGGGGAGAGCGCGCAGACGCCGCTGAAGAAGGGGAGCGGCGACTACGCCATGTCGTTCGGCATCGGCACGCCGGCGACGGGGCTGTCGGGCGAGGCGGACACCGGGAGCGACCTCATCTGGACCAAGTGCGGCGCCTGCGCGCGGTGCTCGCCGCGGGGCTCCCCGTCCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTCGCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGCGGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACGCACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCGGCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGCTCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAGGCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCCCTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTTCACTCCGCTACTCACAAACCCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGGAAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGCGTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTGAGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAAGAGAAATTGAACGGGCATAATACTGCATGTACGGTTACAATATACTTATAAACATAA] [+] EMBL AK061435 [ATAACACATTACATGCATTTGCAAGCCATACGCTCTCTGTAATATGGATACCAAATTGGGAGCGCTTGCTCTCATGCTCCCGCTTCTACTGCTGATTTCCGCTACTCGCGTAGCCTACGGCGGCATCCAACCCACGCCGCCTCCCGCGAGCTTCCAAGCCGCCTTGGTCCGCATCGAGCCCGCAGGCATCAACTACACGCGCGCCGTGCAGCGCTCCCGCTCCCGCCTGTCCATGCTCGCCGCCAGAGCGGTGTCCAACGCGGGGGCGGCGCCGGGGGAGAGCGCGCAGACGCCGCTGAAGAAGGGGAGCGGCGACTACGCCATGTCGTTCGGCATCGGCACGCCGGCGACGGGGCTGTCGGGCGAGGCGGACACCGGGAGCGACCTCATCTGGACCAAGTGCGGCGCCTGCGCGCGGTGCTCGCCGCGGGGCTCCCCGTCCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTCGCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGCGGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACGCACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCGGCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGCTCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAGGCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCCCTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTTCACTCCGCTACTCACAAACCCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGGAAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGCGTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTGAGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAAGAGAAATTGAACGGGCATAATACTGCATGTACGGTTACAATATACTTATAAACATAA] consensusID : consensus_1736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1196 fasta sequence [AATATGGATACCAAATTGGGAGCGCTTGCTTTCATGCTCCCGCTTCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTCGCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGCGGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACGCACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCGGCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGCTCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAGGCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCCCTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTCCACTCCGCTACTCACAAACCCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGGAAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGCGTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTGAGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAAGAGAAATTGAACGGGCATAATACTGC] [+] EMBL AK060038 [AATATGGATACCAAATTGGGAGCGCTTGCTTTCATGCTCCCGCTTCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTCGCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGCGGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACGCACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCGGCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGCTCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAGGCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCCCTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTCCACTCCGCTACTCACAAACCCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGGAAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGCGTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTGAGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAAGAGAAATTGAACGGGCATAATACTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1736#0 ATAACACATTACATGCATTTGCAAGCCATACGCTCTCTGTAATATGGATACCAAATTGGG 60 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 AGCGCTTGCTCTCATGCTCCCGCTTCTACTGCTGATTTCCGCTACTCGCGTAGCCTACGG 120 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 CGGCATCCAACCCACGCCGCCTCCCGCGAGCTTCCAAGCCGCCTTGGTCCGCATCGAGCC 180 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 CGCAGGCATCAACTACACGCGCGCCGTGCAGCGCTCCCGCTCCCGCCTGTCCATGCTCGC 240 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 CGCCAGAGCGGTGTCCAACGCGGGGGCGGCGCCGGGGGAGAGCGCGCAGACGCCGCTGAA 300 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 GAAGGGGAGCGGCGACTACGCCATGTCGTTCGGCATCGGCACGCCGGCGACGGGGCTGTC 360 consensus_1736#1 ------------------------------------------------------------ consensus_1736#0 GGGCGAGGCGGACACCGGGAGCGACCTCATCTGGACCAAGTGCGGCGCCTGCGC--GCGG 418 consensus_1736#1 --------------------------------------AATATGGATACCAAATTGGGAG 22 * * ** * * * consensus_1736#0 TGCTCGCCGCGGGGCTCCCCGTCCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTC 478 consensus_1736#1 CGCTTGCTTTCATGCTCCCGCTTCTACTACCCCACCAGCTCCAGCTCCGCCGCGTTCGTC 82 *** ** ****** * ************************************* consensus_1736#0 GCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGC 538 consensus_1736#1 GCGTGCGGCGACCGCACGTGCGGGGAGCTGCCCCGACCACTGTGCAGCAACGTCGCCGGC 142 ************************************************************ consensus_1736#0 GGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACG 598 consensus_1736#1 GGCGGCAGCGGCAGCGGCAACTGCTCCTACCACTACGCCTACGGCAACGCTAGGGACACG 202 ************************************************************ consensus_1736#0 CACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCG 658 consensus_1736#1 CACCACTACACGGAGGGCATCCTCATGACGGAGACCTTCACCTTCGGCGACGACGCCGCG 262 ************************************************************ consensus_1736#0 GCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGC 718 consensus_1736#1 GCGTTCCCGGGCATCGCGTTCGGGTGCACGCTCCGCTCCGAGGGCGGTTTCGGGACGGGC 322 ************************************************************ consensus_1736#0 TCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAG 778 consensus_1736#1 TCGGGCCTCGTCGGGCTCGGCAGAGGGAAGCTGTCCTTGGTCACGCAGCTCAACGTCGAG 382 ************************************************************ consensus_1736#0 GCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCC 838 consensus_1736#1 GCCTTCGGCTACCGCCTCTCGTCCGACCTGTCCGCGCCCAGCCCCATCTCGTTCGGCTCC 442 ************************************************************ consensus_1736#0 CTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTTCACTCCGCTACTCACAAAC 898 consensus_1736#1 CTCGCCGACGTGACCGGTGGCAACGGCGACAGTTTCATGTCCACTCCGCTACTCACAAAC 502 **************************************** ******************* consensus_1736#0 CCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGG 958 consensus_1736#1 CCGGTGGTTCAGGACCTTCCGTTCTACTACGTCGGTCTGACCGGCATCTCGGTCGGCGGG 562 ************************************************************ consensus_1736#0 AAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGC 1018 consensus_1736#1 AAGCTCGTGCAGATACCTTCGGGGACCTTCTCCTTCGACCGGAGCACCGGGGCGGGCGGC 622 ************************************************************ consensus_1736#0 GTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTG 1078 consensus_1736#1 GTCATCTTCGACTCCGGTACCACGCTTACGATGCTCCCGGACCCCGCGTACACGCTGGTG 682 ************************************************************ consensus_1736#0 AGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGAC 1138 consensus_1736#1 AGGGACGAGCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGAC 742 ************************************************************ consensus_1736#0 GACCTGATCTGTTTCACCGGGGG-TCGTCGACGACGACGTTCCCGTCCATGGTGCTGCAC 1197 consensus_1736#1 GACCTGATCTGTTTCACCGGGGGGTCGTCGACGACGACGTTCCCGTCCATGGTGCTGCAC 802 *********************** ************************************ consensus_1736#0 TTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGC 1257 consensus_1736#1 TTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCGCAAATGCAAGGC 862 ************************************************************ consensus_1736#0 CAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATC 1317 consensus_1736#1 CAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATC 922 ************************************************************ consensus_1736#0 ATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGG 1377 consensus_1736#1 ATCGGCAATATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGG 982 ************************************************************ consensus_1736#0 ATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCC 1437 consensus_1736#1 ATGCTGTTCCAACCGCCCACCGCCTGATACGGGAGATTATGACCGTTGATTTTGTGCGCC 1042 ************************************************************ consensus_1736#0 GTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTT 1497 consensus_1736#1 GTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGTAGCGAATAAGTT 1102 ************************************************************ consensus_1736#0 CTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAG 1557 consensus_1736#1 CTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAG 1162 ************************************************************ consensus_1736#0 TCTTCCAAGAGAAATTGAACGGGCATAATACTGCATGTACGGTTACAATATACTTATAAA 1617 consensus_1736#1 TCTTCCAAGAGAAATTGAACGGGCATAATACTGC-------------------------- 1196 ********************************** consensus_1736#0 CATAA 1622 consensus_1736#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||