These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2029 fasta sequence [CCCGCTACCTCCTCCCGGCGCTCCGGCGACTTCCCTGACTGGGTCTTCCTCGACACTGTTGCGCACACCGGCCGCTGCCACGACAACGCGACCACCGCTCGGGCGAAGTCGAGCGATGGCTACCCCATCGAGGTGTCCTTCGTGTTCGCCGATCCACCCGCCCTCACCCGCTGCTTTGTTCACTGCCCCGCCGGCCTGACGGCAGGTGAGTTCTCCATGTCGCCGCCCTCCATCACCGGCGCGGACGGCGCCTTCCTCCTCCTACGTGTCATCTTCCCCCACCGCTCTGACCGATGCATGGTCACCGACTGGTTCGTCTACAAGTCGGGCCCCGGGACGCCATCTCTCGAGCTCCTGATCCAGCGCCCCAACCCGCTTGACGTTGTATCCAGACGCGCCGGCGTCTTATCCTGTGGCGACCACTGTCTGGTCGTCGACCCCGAATGGCGATTCCATGACGACGACTGGATGAAGTTCCACCTCCATATCTTCTCGAGCAAGACCAAGCGGTGGAGCAACAAGGTCGCAAAGCTGGGTCGTGGCATGGAGGCGTTCAACCCTTTCTTCCTACCCACCAAGGTGTTGTGTGTCGTCCGAGGAGGATCAATGGCCTGGGTTGATTTCCGGAACAGCATCCTACTGCTCGACTCGGTCCCCGGGAACTGCCCCGAGGTGAGCCTGATCCGTCTGCCCCCATTGATGCCCATCAACAACGTTGACTCCGGAGGCAGTCCCGATGGACCTTGCGTGGATCTGGTCCGGGATGTCACCTGTAGAGATGGCTGGTTCAAGTTCATCGAGATGGGATTTCCGTACTTGGATCCTAATGATGCACAGTTAAACCGTGGATGGGAGGCCACCATGTTCAAGAGGAAGATCCGTTCAGATAATTATTGGCAATGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCTTGTTTGTTTCCTGAGATCTTTGACTGCAACGAGCACAAGCTAGCCCTGAACAATGTTGTGAGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATCAAGGCTGATGATCCAGACGGTTGGATCTTTGCCTTCAACACTGAGAACAATAGGCTGGAGGAAATATCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGACTTGTCCAAGCACCTGATGAACAAGGCTCTAGACGTCTTGGCGTCGAGGAGGAGCGGCGGCGGCAACGGTTCAGGGACGCGGAGAACTGGCGTCGAGGAGGAGCGGCGGTGGTGGTTCGGGGATGATGAGGAGTGACGAGGCGGATCCGGCACGGCATCGGCAGCGTGCGCGGTGGCGACGGGCGACTGCGGGTGCAGCGTTGGCGGGCGGGAGGCGCGGCGGCTCCACCTGAACCGCCGAGCTGCGGCGGGCGCAACGTCAGCGGTTTCGGCACGGCATGGTTGCGGGCGTGGCAACGACGGGCTGATGCGGGCTGGAGGCGCGGCAGCTCTACCTCCATCGCTAATCAGAGGCGGGCACGACGTCGGCGGATCCGGCACGGCACGGCTGCCAGCGCGGCGGCAACTGGTGACTACGTGTAGGGGGTGAGGAGGCGGCGCATCTGGCTGCCGCTCCGCGCCCCACGCGCGTGGATCTGGCGTGGATATTGCACGGGTGACGGTGGGTGCGGCTGTGACGGGCAACTGCGGGCAGGAGGCAAGGCGGCGGCGAATCTGGCCGCCGTTCCGCCCGTACGCGCACGGCGCGACCTCTGCGGCGGCAAGCTCGGACTCGGATGGATATGGAGGAACAGCGGCGGCCACCCCCACGACACGCCGCAATCGATGTCCGGAGCAAGCGCTAACAAAAAATTAACATATGATATAGACTGTGAGGATGTATTTGTTGAGTCAAAATTTTGTTGTCATACCAAGTTAATTTTTTAATTAGTAAGGATACCAAGCATATGATGTATATGAAAAAGGGTTTCTAATAAAAACATAGCCGC] [+] EMBL AK064131 [CCCGCTACCTCCTCCCGGCGCTCCGGCGACTTCCCTGACTGGGTCTTCCTCGACACTGTTGCGCACACCGGCCGCTGCCACGACAACGCGACCACCGCTCGGGCGAAGTCGAGCGATGGCTACCCCATCGAGGTGTCCTTCGTGTTCGCCGATCCACCCGCCCTCACCCGCTGCTTTGTTCACTGCCCCGCCGGCCTGACGGCAGGTGAGTTCTCCATGTCGCCGCCCTCCATCACCGGCGCGGACGGCGCCTTCCTCCTCCTACGTGTCATCTTCCCCCACCGCTCTGACCGATGCATGGTCACCGACTGGTTCGTCTACAAGTCGGGCCCCGGGACGCCATCTCTCGAGCTCCTGATCCAGCGCCCCAACCCGCTTGACGTTGTATCCAGACGCGCCGGCGTCTTATCCTGTGGCGACCACTGTCTGGTCGTCGACCCCGAATGGCGATTCCATGACGACGACTGGATGAAGTTCCACCTCCATATCTTCTCGAGCAAGACCAAGCGGTGGAGCAACAAGGTCGCAAAGCTGGGTCGTGGCATGGAGGCGTTCAACCCTTTCTTCCTACCCACCAAGGTGTTGTGTGTCGTCCGAGGAGGATCAATGGCCTGGGTTGATTTCCGGAACAGCATCCTACTGCTCGACTCGGTCCCCGGGAACTGCCCCGAGGTGAGCCTGATCCGTCTGCCCCCATTGATGCCCATCAACAACGTTGACTCCGGAGGCAGTCCCGATGGACCTTGCGTGGATCTGGTCCGGGATGTCACCTGTAGAGATGGCTGGTTCAAGTTCATCGAGATGGGATTTCCGTACTTGGATCCTAATGATGCACAGTTAAACCGTGGATGGGAGGCCACCATGTTCAAGAGGAAGATCCGTTCAGATAATTATTGGCAATGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCTTGTTTGTTTCCTGAGATCTTTGACTGCAACGAGCACAAGCTAGCCCTGAACAATGTTGTGAGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATCAAGGCTGATGATCCAGACGGTTGGATCTTTGCCTTCAACACTGAGAACAATAGGCTGGAGGAAATATCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGACTTGTCCAAGCACCTGATGAACAAGGCTCTAGACGTCTTGGCGTCGAGGAGGAGCGGCGGCGGCAACGGTTCAGGGACGCGGAGAACTGGCGTCGAGGAGGAGCGGCGGTGGTGGTTCGGGGATGATGAGGAGTGACGAGGCGGATCCGGCACGGCATCGGCAGCGTGCGCGGTGGCGACGGGCGACTGCGGGTGCAGCGTTGGCGGGCGGGAGGCGCGGCGGCTCCACCTGAACCGCCGAGCTGCGGCGGGCGCAACGTCAGCGGTTTCGGCACGGCATGGTTGCGGGCGTGGCAACGACGGGCTGATGCGGGCTGGAGGCGCGGCAGCTCTACCTCCATCGCTAATCAGAGGCGGGCACGACGTCGGCGGATCCGGCACGGCACGGCTGCCAGCGCGGCGGCAACTGGTGACTACGTGTAGGGGGTGAGGAGGCGGCGCATCTGGCTGCCGCTCCGCGCCCCACGCGCGTGGATCTGGCGTGGATATTGCACGGGTGACGGTGGGTGCGGCTGTGACGGGCAACTGCGGGCAGGAGGCAAGGCGGCGGCGAATCTGGCCGCCGTTCCGCCCGTACGCGCACGGCGCGACCTCTGCGGCGGCAAGCTCGGACTCGGATGGATATGGAGGAACAGCGGCGGCCACCCCCACGACACGCCGCAATCGATGTCCGGAGCAAGCGCTAACAAAAAATTAACATATGATATAGACTGTGAGGATGTATTTGTTGAGTCAAAATTTTGTTGTCATACCAAGTTAATTTTTTAATTAGTAAGGATACCAAGCATATGATGTATATGAAAAAGGGTTTCTAATAAAAACATAGCCGC] consensusID : consensus_1739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [AGACAAGGGGTCCGTTCAGATAATTATTGGCAATGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCTTGTTTGTTTCCTGAGATCTTTGACTGCAATGAGCACAAGCTAGCCCTGAACAATGTTATGAGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATCAAGGCTGATGATCCAGACGGTTGGATCTTTGCCATCAACACTGAGAACAATAGGCTGGAGGAAATACCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGACTTGTCCAAGCACCTGATGAACAAGGTTCTAGGGTCTCACTTGGCCAATGATATGGATAAATGCACAAACAGAGAAAAGATTCAGTTGTTAGGTACCAATCTTGTGGCCGCATTGGATGTGCTCCGGAACATAGGTAATTGATACTGAATTATGCACAACACAATGCAGGTGTACATGCATGAATGTTGATATTTACATGCGCTGAATCTATATGTCCAAAATGTCTTGTGTAATCATTAAGTGTGCTGAATCTAATATAACTGTCATTTCTTTATTAAAAAAAA] [-] EMBL CA761641 [AGACAAGGGGTCCGTTCAGATAATTATTGGCAATGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCTTGTTTGTTTCCTGAGATCTTTGACTGCAATGAGCACAAGCTAGCCCTGAACAATGTTATGAGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATCAAGGCTGATGATCCAGACGGTTGGATCTTTGCCATCAACACTGAGAACAATAGGCTGGAGGAAATACCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGACTTGTCCAAGCACCTGATGAACAAGGTTCTAGGGTCTCACTTGGCCAATGATATGGATAAATGCACAAACAGAGAAAAGATTCAGTTGTTAGGTACCAATCTTGTGGCCGCATTGGATGTGCTCCGGAACATAGGTAATTGATACTGAATTATGCACAACACAATGCAGGTGTACATGCATGAATGTTGATATTTACATGCGCTGAATCTATATGTCCAAAATGTCTTGTGTAATCATTAAGTGTGCTGAATCTAATATAACTGTCATTTCTTTATTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1739#0 CCCGCTACCTCCTCCCGGCGCTCCGGCGACTTCCCTGACTGGGTCTTCCTCGACACTGTT 60 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GCGCACACCGGCCGCTGCCACGACAACGCGACCACCGCTCGGGCGAAGTCGAGCGATGGC 120 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 TACCCCATCGAGGTGTCCTTCGTGTTCGCCGATCCACCCGCCCTCACCCGCTGCTTTGTT 180 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 CACTGCCCCGCCGGCCTGACGGCAGGTGAGTTCTCCATGTCGCCGCCCTCCATCACCGGC 240 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GCGGACGGCGCCTTCCTCCTCCTACGTGTCATCTTCCCCCACCGCTCTGACCGATGCATG 300 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GTCACCGACTGGTTCGTCTACAAGTCGGGCCCCGGGACGCCATCTCTCGAGCTCCTGATC 360 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 CAGCGCCCCAACCCGCTTGACGTTGTATCCAGACGCGCCGGCGTCTTATCCTGTGGCGAC 420 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 CACTGTCTGGTCGTCGACCCCGAATGGCGATTCCATGACGACGACTGGATGAAGTTCCAC 480 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 CTCCATATCTTCTCGAGCAAGACCAAGCGGTGGAGCAACAAGGTCGCAAAGCTGGGTCGT 540 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GGCATGGAGGCGTTCAACCCTTTCTTCCTACCCACCAAGGTGTTGTGTGTCGTCCGAGGA 600 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GGATCAATGGCCTGGGTTGATTTCCGGAACAGCATCCTACTGCTCGACTCGGTCCCCGGG 660 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 AACTGCCCCGAGGTGAGCCTGATCCGTCTGCCCCCATTGATGCCCATCAACAACGTTGAC 720 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 TCCGGAGGCAGTCCCGATGGACCTTGCGTGGATCTGGTCCGGGATGTCACCTGTAGAGAT 780 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GGCTGGTTCAAGTTCATCGAGATGGGATTTCCGTACTTGGATCCTAATGATGCACAGTTA 840 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 AACCGTGGATGGGAGGCCACCATGTTCAAGAGGAAGATCCGTTCAGATAATTATTGGCAA 900 consensus_1739#1 ---------------------------AGACAAGGGGTCCGTTCAGATAATTATTGGCAA 33 * * *********************** consensus_1739#0 TGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCT 960 consensus_1739#1 TGGGAGCCGTGCGGCACTGTTGACTCTGCTAGCCTTTTGCCTGCCGACTCATGTGTTGCT 93 ************************************************************ consensus_1739#0 TGTTTGTTTCCTGAGATCTTTGACTGCAACGAGCACAAGCTAGCCCTGAACAATGTTGTG 1020 consensus_1739#1 TGTTTGTTTCCTGAGATCTTTGACTGCAATGAGCACAAGCTAGCCCTGAACAATGTTATG 153 ***************************** *************************** ** consensus_1739#0 AGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATC 1080 consensus_1739#1 AGCTCATTTCCCACATTGGATCTATACTGTGACGATGTTGTTTACATGATGACCAAGATC 213 ************************************************************ consensus_1739#0 AAGGCTGATGATCCAGACGGTTGGATCTTTGCCTTCAACACTGAGAACAATAGGCTGGAG 1140 consensus_1739#1 AAGGCTGATGATCCAGACGGTTGGATCTTTGCCATCAACACTGAGAACAATAGGCTGGAG 273 ********************************* ************************** consensus_1739#0 GAAATATCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGAC 1200 consensus_1739#1 GAAATACCGCCCTTTTCACAAGAAAATTGTCATCTCCATCGCATCTACCTGCAATGTGAC 333 ****** ***************************************************** consensus_1739#0 TTGTCCAAGCACCTGATGAACAAGGCTCTAGACGT---CTTGGCGTCGAGGAGGAGCGGC 1257 consensus_1739#1 TTGTCCAAGCACCTGATGAACAAGGTTCTAGGGTCTCACTTGGCCAATGATATGGATAAA 393 ************************* ***** ****** * * consensus_1739#0 GGCGGCAACGGTTCAGGGACGCGGAGAACTGGCGTCGAGGAGG-AGCGGCGGTGGTGGT- 1315 consensus_1739#1 TGCACAAACAGAGAAAAGATTCAGTTGTTAGGTACCAATCTTGTGGCCGCATTGGATGTG 453 ** *** * * ** * * ** * * * ** ** *** ** consensus_1739#0 -TCGGGGATGATGAGGAGTGACGAGGCGGATCCGGCACGGCAT--CGGCAGCGTGCGCG- 1371 consensus_1739#1 CTCCGGAACATAGGTAATTGATAC--TGAATTATGCACAACACAATGCAGGTGTACATGC 511 ** ** * * * *** * ** **** ** * * ** * * consensus_1739#0 GTGGCGACGGGCGACTGCGGGTGCAGCGTTGGCGGGCGGGAGGCGCGGCGGCTCCACCTG 1431 consensus_1739#1 ATGAATGTTGATATTTACATGCGCTGAATCTATATGTCCAAAATGTCTTGTGTAATCATT 571 ** * * * * ** * * * * * * * * * consensus_1739#0 AACCGCCGAGCTGCGGCGGGCGCAACGTCAGCGGTTTCGGCACGGCATGGTTGCGGGCGT 1491 consensus_1739#1 AAGTGT---GCTGAATCTAATATAACTGTCATTTCTTTATTAAAAAAAA----------- 617 ** * **** * *** ** * * consensus_1739#0 GGCAACGACGGGCTGATGCGGGCTGGAGGCGCGGCAGCTCTACCTCCATCGCTAATCAGA 1551 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GGCGGGCACGACGTCGGCGGATCCGGCACGGCACGGCTGCCAGCGCGGCGGCAACTGGTG 1611 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 ACTACGTGTAGGGGGTGAGGAGGCGGCGCATCTGGCTGCCGCTCCGCGCCCCACGCGCGT 1671 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GGATCTGGCGTGGATATTGCACGGGTGACGGTGGGTGCGGCTGTGACGGGCAACTGCGGG 1731 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 CAGGAGGCAAGGCGGCGGCGAATCTGGCCGCCGTTCCGCCCGTACGCGCACGGCGCGACC 1791 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 TCTGCGGCGGCAAGCTCGGACTCGGATGGATATGGAGGAACAGCGGCGGCCACCCCCACG 1851 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 ACACGCCGCAATCGATGTCCGGAGCAAGCGCTAACAAAAAATTAACATATGATATAGACT 1911 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 GTGAGGATGTATTTGTTGAGTCAAAATTTTGTTGTCATACCAAGTTAATTTTTTAATTAG 1971 consensus_1739#1 ------------------------------------------------------------ consensus_1739#0 TAAGGATACCAAGCATATGATGTATATGAAAAAGGGTTTCTAATAAAAACATAGCCGC 2029 consensus_1739#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||