cluster # 1742

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Oryza sativa
cluster # 1742 cluster # 1742 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1742#0 length = 690 sequences # 1

consensus_1742#1 length = 534 sequences # 1

consensusID : consensus_1742#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [CTGTCCCTTGTTAATTCTTCTTCTTCTTCCTAACTACTCCAAGCTAGCTCAGAATCAGATCCATCCATGGCCTCCTCCGGCTCCAAGTCCAAGACCAACAATGGCTTCTTCGTCCCTTCTCCTGCAACTGCAATGGCGCCATGCTTCCTCCTCTTGCTCATCTTCTTCTTCCTCCATGTCGATGCTTCTGCTGCTGCTGCTTCTTCTTCTTCCCATCCACAGCTGGTGCAGCAGATGCAGGTGAAGAGGGCGAGATCCCTCCTGCAGGCTCCAAAGATAGACTGCCAGGGGACGTGCTCGGGGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTCTGCTGCAACCGATGCAACTGCGTTCCCCCGGGAAGTGGGCAGGACACCCGCCACCTCTGCCCTTGCTACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTGCCCATGATTCCTTCCTTCCTATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGTATGTGTACGTATGTGTTCCATGCATCTTGATGTTCAATCCCTACATCTCTCTGGCTGTCACTACTAGCTTAGCTACTACATAGGACTGCTCTATATAATAGATGCCTTTCTACTTTCTTCAATCTCCAGCACCAGGAATAAAACAAACATATCATG]

[+] EMBL AK059502             [CTGTCCCTTGTTAATTCTTCTTCTTCTTCCTAACTACTCCAAGCTAGCTCAGAATCAGATCCATCCATGGCCTCCTCCGGCTCCAAGTCCAAGACCAACAATGGCTTCTTCGTCCCTTCTCCTGCAACTGCAATGGCGCCATGCTTCCTCCTCTTGCTCATCTTCTTCTTCCTCCATGTCGATGCTTCTGCTGCTGCTGCTTCTTCTTCTTCCCATCCACAGCTGGTGCAGCAGATGCAGGTGAAGAGGGCGAGATCCCTCCTGCAGGCTCCAAAGATAGACTGCCAGGGGACGTGCTCGGGGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTCTGCTGCAACCGATGCAACTGCGTTCCCCCGGGAAGTGGGCAGGACACCCGCCACCTCTGCCCTTGCTACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTGCCCATGATTCCTTCCTTCCTATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGTATGTGTACGTATGTGTTCCATGCATCTTGATGTTCAATCCCTACATCTCTCTGGCTGTCACTACTAGCTTAGCTACTACATAGGACTGCTCTATATAATAGATGCCTTTCTACTTTCTTCAATCTCCAGCACCAGGAATAAAACAAACATATCATG]




>consensus_1742#0
CTGTCCCTTGTTAATTCTTCTTCTTCTTCCTAACTACTCCAAGCTAGCTCAGAATCAGAT
CCATCCATGGCCTCCTCCGGCTCCAAGTCCAAGACCAACAATGGCTTCTTCGTCCCTTCT
CCTGCAACTGCAATGGCGCCATGCTTCCTCCTCTTGCTCATCTTCTTCTTCCTCCATGTC
GATGCTTCTGCTGCTGCTGCTTCTTCTTCTTCCCATCCACAGCTGGTGCAGCAGATGCAG
GTGAAGAGGGCGAGATCCCTCCTGCAGGCTCCAAAGATAGACTGCCAGGGGACGTGCTCG
GGGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTCTGCTGC
AACCGATGCAACTGCGTTCCCCCGGGAAGTGGGCAGGACACCCGCCACCTCTGCCCTTGC
TACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTGCCCATGATTCCTTCCTTCC
TATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGTATGTGT
ACGTATGTGTTCCATGCATCTTGATGTTCAATCCCTACATCTCTCTGGCTGTCACTACTA
GCTTAGCTACTACATAGGACTGCTCTATATAATAGATGCCTTTCTACTTTCTTCAATCTC
CAGCACCAGGAATAAAACAAACATATCATG

consensusID : consensus_1742#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [CTCCTGCAGGCTCCAAAGATAGGTATGTAAATGATACATTACAGGCAGGAGAGGAGAGGCGATGGAATTGTACTAATAAATTAAAATGGTACCACTAAATGTATAGACTGCCAGGGGACGTGCTCGGGGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTCTGCTGCAACCGATGCAACTGCGTTCCCCCGGGAAGTGGGCAGGACACCCGCCACCTCTGCCCTTGCTACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTGCCCATGATTCCTTCCTTCCTATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGTATGTGTACGTATGTGTTCCATGCATCTTGATGTTCAATCCCTTCATCTCTCTGGCTGTCACTACTAGCTTAGCTACTACATAGGACTGCTCTATATAATAGATGCCTTTCTACTTTCTTCAATCTCCAGCACCAGGAATAAAACAAACATATCATGATTCTCTTCTAAAAAAAA]

[+] EMBL CA756790             [CTCCTGCAGGCTCCAAAGATAGGTATGTAAATGATACATTACAGGCAGGAGAGGAGAGGCGATGGAATTGTACTAATAAATTAAAATGGTACCACTAAATGTATAGACTGCCAGGGGACGTGCTCGGGGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTCTGCTGCAACCGATGCAACTGCGTTCCCCCGGGAAGTGGGCAGGACACCCGCCACCTCTGCCCTTGCTACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTGCCCATGATTCCTTCCTTCCTATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGTATGTGTACGTATGTGTTCCATGCATCTTGATGTTCAATCCCTTCATCTCTCTGGCTGTCACTACTAGCTTAGCTACTACATAGGACTGCTCTATATAATAGATGCCTTTCTACTTTCTTCAATCTCCAGCACCAGGAATAAAACAAACATATCATGATTCTCTTCTAAAAAAAA]




>consensus_1742#1
CTCCTGCAGGCTCCAAAGATAGGTATGTAAATGATACATTACAGGCAGGAGAGGAGAGGC
GATGGAATTGTACTAATAAATTAAAATGGTACCACTAAATGTATAGACTGCCAGGGGACG
TGCTCGGGGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTC
TGCTGCAACCGATGCAACTGCGTTCCCCCGGGAAGTGGGCAGGACACCCGCCACCTCTGC
CCTTGCTACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTGCCCATGATTCCTT
CCTTCCTATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGT
ATGTGTACGTATGTGTTCCATGCATCTTGATGTTCAATCCCTTCATCTCTCTGGCTGTCA
CTACTAGCTTAGCTACTACATAGGACTGCTCTATATAATAGATGCCTTTCTACTTTCTTC
AATCTCCAGCACCAGGAATAAAACAAACATATCATGATTCTCTTCTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1742#0      CTGTCCCTTGTTAATTCTTCTTCTTCTTCCTAACTACTCCAAGCTAGCTCAGAATCAGAT 60
consensus_1742#1      ------------------------------------------------------------
                                                                                  

consensus_1742#0      CCATCCATGGCCTCCTCCGGCTCCAAGTCCAAGACCAACAATGGCTTCTTCGTCCCTTCT 120
consensus_1742#1      ------------------------------------------------------------
                                                                                  

consensus_1742#0      CCTGCAACTGCAATGGCGCCATGCTTCCTCCTCTTGCTCATCTTCTTCTTCCTCCATGTC 180
consensus_1742#1      -----------------------------------------CTCCTGCAGGCTCCAAA-- 17
                                                               ** ** *   *****    

consensus_1742#0      GATGCTTCTGCTGCTGCTGCTTCTTCTTCTTCCCATCCACAGCTGGTGCAGCAGATGCAG 240
consensus_1742#1      GATAGGTATGTAAATGATACATTACAGGC------AGGAGAGGAGAGGCGATGGAATTGT 71
                      ***   * **    ** * * *      *         * **  *  **    **     

consensus_1742#0      GTGAAGAGGGCGAGATCCCTCCTGCAGGCTCCAAAGATAGACTGCCAGGGGACGTGCTCG 300
consensus_1742#1      ACTAATAAATTAAAATGGTACC-----ACTAAATGTATAGACTGCCAGGGGACGTGCTCG 126
                         ** *     * **    **      **  *   ************************

consensus_1742#0      GGGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTCTGCTGC 360
consensus_1742#1      GGGCGATGCGCCAACAACTGGAAGAAGGAGATGTGCAACAAGATGTGCAACGTCTGCTGC 186
                      ************************************************************

consensus_1742#0      AACCGATGCAACTGCGTTCCCCCGGGAAGTGGGCAGGACACCCGCCACCTCTGCCCTTGC 420
consensus_1742#1      AACCGATGCAACTGCGTTCCCCCGGGAAGTGGGCAGGACACCCGCCACCTCTGCCCTTGC 246
                      ************************************************************

consensus_1742#0      TACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTGCCCATGATTCCTTCCTTCC 480
consensus_1742#1      TACGACACCATGGTTAATCCACACAACGGCAAGCTCAAGTGCCCATGATTCCTTCCTTCC 306
                      ************************************************************

consensus_1742#0      TATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGTATGTGT 540
consensus_1742#1      TATTAGCTGCTGCTATTGCTCTCAGAGAGATCAGAGTACAATGTACTTGGTAGTATGTGT 366
                      ************************************************************

consensus_1742#0      ACGTATGTGTTCCATGCATCTTGATGTTCAATCCCTACATCTCTCTGGCTGTCACTACTA 600
consensus_1742#1      ACGTATGTGTTCCATGCATCTTGATGTTCAATCCCTTCATCTCTCTGGCTGTCACTACTA 426
                      ************************************ ***********************

consensus_1742#0      GCTTAGCTACTACATAGGACTGCTCTATATAATAGATGCCTTTCTACTTTCTTCAATCTC 660
consensus_1742#1      GCTTAGCTACTACATAGGACTGCTCTATATAATAGATGCCTTTCTACTTTCTTCAATCTC 486
                      ************************************************************

consensus_1742#0      CAGCACCAGGAATAAAACAAACATATCATG------------------ 690
consensus_1742#1      CAGCACCAGGAATAAAACAAACATATCATGATTCTCTTCTAAAAAAAA 534
                      ******************************