cluster # 175

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Oryza sativa
cluster # 175 cluster # 175 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_175#0 length = 584 sequences # 1

consensus_175#1 length = 348 sequences # 1

consensusID : consensus_175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [GCCNCCNTACTGCATNNNCNNCTCATATNCCGACTTCNCTCNTANNANCGAATTNGGTTCNCCGGTCCCCCCCNTCGANNTCCANCCTCNCCTCGTNCCGGNAANAAATNGTGNNNNCCCANANNNACCAGNNGANCCCGCGNGGANNANGTCNAGNGGGGGGATCCAGGAATTCNGGATTCGGCTTTCCTNCCCCTTGNTGGCCCGGCGCCNTNCNTGCATTGGAGTGACCTCTGGGAATGTTATATTTGGGCCACNTCTTCCAGANGTACTGNGTCANAGAAGCAGTCAGCNGCANNCAGNCAAGANGGAGTCAAAAGTAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAGTTTTGNTGATTCAACTTNTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTTGTTAGAACAGTTTCAGGTAGCTGTATCTGTATGCCCTAGTTGTTGAAAGGAACATTGCAACATCCACAGATGAAAGGAACATTCCAAACCATCATTTTGGGCAAAAAAAAAA]

[+] EMBL C97927               [GCCNCCNTACTGCATNNNCNNCTCATATNCCGACTTCNCTCNTANNANCGAATTNGGTTCNCCGGTCCCCCCCNTCGANNTCCANCCTCNCCTCGTNCCGGNAANAAATNGTGNNNNCCCANANNNACCAGNNGANCCCGCGNGGANNANGTCNAGNGGGGGGATCCAGGAATTCNGGATTCGGCTTTCCTNCCCCTTGNTGGCCCGGCGCCNTNCNTGCATTGGAGTGACCTCTGGGAATGTTATATTTGGGCCACNTCTTCCAGANGTACTGNGTCANAGAAGCAGTCAGCNGCANNCAGNCAAGANGGAGTCAAAAGTAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAGTTTTGNTGATTCAACTTNTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTTGTTAGAACAGTTTCAGGTAGCTGTATCTGTATGCCCTAGTTGTTGAAAGGAACATTGCAACATCCACAGATGAAAGGAACATTCCAAACCATCATTTTGGGCAAAAAAAAAA]




>consensus_175#0
GCCNCCNTACTGCATNNNCNNCTCATATNCCGACTTCNCTCNTANNANCGAATTNGGTTC
NCCGGTCCCCCCCNTCGANNTCCANCCTCNCCTCGTNCCGGNAANAAATNGTGNNNNCCC
ANANNNACCAGNNGANCCCGCGNGGANNANGTCNAGNGGGGGGATCCAGGAATTCNGGAT
TCGGCTTTCCTNCCCCTTGNTGGCCCGGCGCCNTNCNTGCATTGGAGTGACCTCTGGGAA
TGTTATATTTGGGCCACNTCTTCCAGANGTACTGNGTCANAGAAGCAGTCAGCNGCANNC
AGNCAAGANGGAGTCAAAAGTAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAG
CCAGTTTTGNTGATTCAACTTNTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGA
AGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTTGTTAGAAC
AGTTTCAGGTAGCTGTATCTGTATGCCCTAGTTGTTGAAAGGAACATTGCAACATCCACA
GATGAAAGGAACATTCCAAACCATCATTTTGGGCAAAAAAAAAA

consensusID : consensus_175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [AGCGAGGGCCAAGAAACAGAAGAACCCGCGGGGAGAAGGCGAGAGGGGGGATCAGGAATTCAGGATGCGGCTCTCCTTCCCCCTGGTGGCCGGCGCCGTCGTGATTGGAGTGATCTCTGGGAATGTTATATTTGGGCCACCTCTTCAGAAGTACTGGGCAGAGAAGCAGCAGCAGCAGCAGCAAGAGGGAGCAAAAGAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAGTTTTGCTGATTCAACTTCTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTT]

[+] EMBL OS0136A              [AGCGAGGGCCAAGAAACAGAAGAACCCGCGGGGAGAAGGCGAGAGGGGGGATCAGGAATTCAGGATGCGGCTCTCCTTCCCCCTGGTGGCCGGCGCCGTCGTGATTGGAGTGATCTCTGGGAATGTTATATTTGGGCCACCTCTTCAGAAGTACTGGGCAGAGAAGCAGCAGCAGCAGCAGCAAGAGGGAGCAAAAGAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAGTTTTGCTGATTCAACTTCTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTT]




>consensus_175#1
AGCGAGGGCCAAGAAACAGAAGAACCCGCGGGGAGAAGGCGAGAGGGGGGATCAGGAATT
CAGGATGCGGCTCTCCTTCCCCCTGGTGGCCGGCGCCGTCGTGATTGGAGTGATCTCTGG
GAATGTTATATTTGGGCCACCTCTTCAGAAGTACTGGGCAGAGAAGCAGCAGCAGCAGCA
GCAAGAGGGAGCAAAAGAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAGCCAG
TTTTGCTGATTCAACTTCTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGAAGCT
ACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_175#0      GCCNCCNTACTGCATNNNCNNCTCATATNCCGACTTCNCTCNTANNANCGAATTNGGTTC 60
consensus_175#1      ------------------------------------------------------------
                                                                                 

consensus_175#0      NCCGGTCCCCCCCNTCGANNTCCANCCTCNCCTCGTNCCGGNAANAAATNGTGNNNNCCC 120
consensus_175#1      -------------------------------------------------AGCGAGGGCCA 11
                                                                       * *    ** 

consensus_175#0      ANANNNACCAGNNGANCCCGCGNGGANNANGTCNAGNGGGGGGATCCAGGAATTCNGGAT 180
consensus_175#1      AGAAACA---GAAGAACCCGCGGGGAGAAGG-CGAGAGGGGGGATC-AGGAATTCAGGAT 66
                     * *   *   *  ** ****** ***  * * * ** ********* ******** ****

consensus_175#0      TCGGCTTTCCTNCCCCTTGNTGGCCCGGCGCCNTNCNTGCATTGGAGTGACCTCTGGGAA 240
consensus_175#1      GCGGCTCTCCTTCCCCCTGGTGGCC-GGCGCCGTC-GTG-ATTGGAGTGATCTCTGGGAA 123
                      ***** **** **** ** ***** ****** *   ** ********** *********

consensus_175#0      TGTTATATTTGGGCCACNTCTTCCAGANGTACTGNGTCANAGAAGCAGTCAGCNGCANNC 300
consensus_175#1      TGTTATATTTGGGCCACCTCTTC-AGAAGTACTGGG-CAGAGAAGCAG-CAGCAGCAGC- 179
                     ***************** ***** *** ****** * ** ******** **** ***   

consensus_175#0      AGNCAAGANGGAGTCAAAAGTAGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAG 360
consensus_175#1      -AGCAAGAGGGAG-CAAAAG-AGGGGCAAACTGGAACGACATAATTAAACACAAGTGAAG 236
                        ***** **** ****** ***************************************

consensus_175#0      CCAGTTTTGNTGATTCAACTTNTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGA 420
consensus_175#1      CCAGTTTTGCTGATTCAACTTCTGCCAAGCTTACAAGAAGTCCCAATATCAGAACGCTGA 296
                     ********* *********** **************************************

consensus_175#0      AGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTTGTTAGAAC 480
consensus_175#1      AGCTACAACATTGTGAAAACTATTCCATTAGTATGCTCTAGCTCTAGCCTTT-------- 348
                     ****************************************************        

consensus_175#0      AGTTTCAGGTAGCTGTATCTGTATGCCCTAGTTGTTGAAAGGAACATTGCAACATCCACA 540
consensus_175#1      ------------------------------------------------------------
                                                                                 

consensus_175#0      GATGAAAGGAACATTCCAAACCATCATTTTGGGCAAAAAAAAAA 584
consensus_175#1      --------------------------------------------