cluster # 1753

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Oryza sativa
cluster # 1753 cluster # 1753 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1753#0 length = 533 sequences # 1

consensus_1753#1 length = 438 sequences # 1

consensusID : consensus_1753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGACGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA]

[+] EMBL CA753019             [CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGACGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA]




>consensus_1753#0
CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGA
CGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGC
GCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCA
TCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGC
TGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCT
TTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTC
CGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGC
TGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA

consensusID : consensus_1753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [TCCAGGCCTTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC]

[+] EMBL CB680300             [TCCAGGCCTTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC]




>consensus_1753#1
TCCAGGCCTTCCGGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCG
AGGTCGCGCCGTGGCAGCAGCAGCAGCCCATCTCGGCGCCCGCCGGCGCCGGCGCCGCCG
GCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGATCACTCCA
GCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTT
CTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTT
TCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGCTGATAAGGTGAATTTTGAGAG
CAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTACTATTTAC
TACAACGACGGCGTCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1753#0      CGTCACTGTTTCATAGCTAGTAGGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGA 60
consensus_1753#1      ------------------------------------------------------------
                                                                                  

consensus_1753#0      CGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTAGTCCGGACCTCGTCCCGCTCGC 120
consensus_1753#1      ------------------------------TCCAGGCCTTCCGGACCTCGTCCCGCTCGC 30
                                                    ******   *********************

consensus_1753#0      GCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCATGGCAGCAGCAGCAGCCCA 180
consensus_1753#1      GCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCA 90
                      **************************************** *******************

consensus_1753#0      TCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGC 240
consensus_1753#1      TCTCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGC 150
                      ************************************************************

consensus_1753#0      TGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCT 300
consensus_1753#1      TGGACACCATCGTGGAGGAAGATCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCT 210
                      ************************************************************

consensus_1753#0      TTCAGGCCGGCCCGTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT 360
consensus_1753#1      TTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTC-------------- 256
                      ************************** *******************              

consensus_1753#0      CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGTCGTCGTCATCGTCAGCTC 420
consensus_1753#1      -------------------------------------AGCGTCGTCGTCATCGTCAGCTC 279
                                                           ***********************

consensus_1753#0      CGGCGGCCATGGCTTACCGTNTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGC 480
consensus_1753#1      CGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAAGCGTTGC 339
                      ******************** ***************************************

consensus_1753#0      TGATAAGGTGAATNTTGAGAGCAGAGGCGTTGCGTGGGTGTGTGTGGCAGGCA------- 533
consensus_1753#1      TGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATG 399
                      ************* ************************* *************       

consensus_1753#0      ---------------------------------------
consensus_1753#1      ATGCAGTCAGTTACTATTTACTACAACGACGGCGTCCTC 438