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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2309 fasta sequence
[AACACACAAGCTCTCCCTTGTCTTAACTGTTCTCCAAACAAATAAGTACTTCCAAGAATTTTTCGTTCGAAAGATTCAGCCTTGGTGCAATTCACCTTTTCTTTGGTGCGATAAAATGGAGGCCGCCATCACCATGGATGAGAACTTGGGACGAAGTGGGTCATTTCGAGCTGCGATGAGCATCTTTGGCGAAAGCATCAACGGGAGGAAGGCAGACAAGAACAGAGGAACTGTTCCAGCCCAAGAGAATCTGTCTTCTGAAATGAAGCAGCTAGCACAATCCGGTCTGGACAAGCTGAATGAACGCAAGGCGTACGTGGATAAAGAGAGAGCCGGCGCCGAGTCCGAGCTGTCGAGAGCGCGAGCCATGGCGAAGGAGCTTGAGCGCCAAATCGAGCAGACAACGGCCAAAGCCACGTCCCAGAGGTCGGAGCTCCAAGCAATGTGGGCAGCGAGGACGAGGAGGAAGGGCACCGACGCACCGGGCGCGGAGCGCGACGCGCGGTACGCGGAGGTGGTGCAGGAGCTGGACCAAGCCAAGAAGGAGCTGCTCCGGCTGCGGCTCGAGGTGCGGTCCGCGCCATCGACGAGATGAAGCGGCGGGTGGACGAGGCGAACGAGGAGCACGTGCTGGTGGAGCTGGCGCGCATCGAGGCCGAGCGGGAGCGCCGCGAGATCGAGGCCCAGCGCGGCGCCGAGGCCGAGCGGTTCGCCGCGGACATCGAGGCCGCGAGGGCCAGGGTCAGGGCGCTGCAGAAGGAGGCGAGCCGCGCGAGGGAGATGGAGGCGAAGCTCGCCGTGACGAACTCCGACGTGGAGGTGCTTCAGGCCGAGATGGAGCTGGTGCGCGCCATGGAGAAGAGCCACGCCAAGAGCGACGAGGCGGCGGAGGACGCAGCGAGGAGGAAGAAGGAGGAGGCGCAGGACAAGGCGCTGCTGAAGACCGCGGAGGCCGAGCTGGACGCGGCGAAGAAGGAGCTGGAGACGATCAAGGCCGGGAGCTTCCAGTTCATGACGTCCATGGACTGCACGCGCACCGAGATCATGCGCGTCGCCGAGGAGATCCGCCTGCTCAAGGCGAAGGAAAAGAAAGCGGACGCGCAGGTGCAACAGCTGAACACCAAGCTCCTCAAGGCGAAGGCGCGGTTGGAGGCCGTCACGGCGGCCGACGAGAGGTCGAAGGCGATCGTGTCCAACTTGGCGGCGGCGATGAAGCAACTGAAAGCCGAGACGGAGGCGGCGAGGATGGAGGAGGACCTCACCAAGCTGGAGAAACGGTGCGTGATCGCGGAGGCCGAGAACATCGAGAAGGAGATCGCCACGACCGAGGGACGGATCAAGCAGTCGGTGAAGGAGCTGGATGCGGCGAAAGCGTTGGAGGCCGAGGCGATGAGGAAGCTCAGGGACACCGTGGAGAGCACGATGCAGGCCAGGGCGTCGTCGGCGGCACGGCGGCAGGGGACGATGACCATCTCCCGGTTCGAGTACGAGTACCTGACCGGGCGCGCGGCGCTGGTCCGGGTGGTGACCGACAAGAAGGTGGCCGCGGCGCAGGCGTGGGTGCAGGCGCTGAAGGCCAGCGAGAAGGAGGCCGCGGCGCGCGCCGAGGCGGCGGAGCGGGAGGTGAGGGAGATGGAGGCCAGGGCGGCGCAGGTGGCGGCGGAGGCGGAGAAGACGGCGGCGGAGCAGAAGGAGCTGGAGCAGGAGCTGTACGACCTGAACGCGGCGGCGGAGAGGGACGGCCTGCAGTGCGCGTACCCGCGGCGGCGGTCGAGCAGGGTGTCGGCGACGTCGAGGAGGTCCAAGCCCCGGCGGTCGTCGGTGTCCGCGGGCGCATGGAACCCGCGCTCGCCGTCGTTCACCATCAAGAGGAAGAGGAAGGTGATGCCCAACCTCCTGAAGCTGATCAAGAATAAAAGAGGCGGCAAAAAGAACACCAACTGATCGAGCTGCGTAGATTGTCATGACCGCTCGCGACGCTGCGACCGTTTTTCTTGTTCTGATTTCCGGCGGCGCAGCACAAGAATGTTTTGATCATCAGTTTCGCGGGATTAATGGCACTGATACTGTATACTTGGGCTAGATGTAAGTACATATTAAGCTGGCCATCCGTTCACTACATAATGTAACCTGCACGTTCCTAAATGGATGGCTGGACGTCAACAAGTGACGAGTTTTGTGTGGTCTGTTGGATAGGATGGATGGCTTGGATCAGTTGTTGGTTATTGCCCTAGCAGAGTTAAAATTAAACTCGTGTTCATCAGCTTTAAGGGGGCTTTGTTGACCTTGTTACCCAAATCAACCATACC]
[+] EMBL AK120588 [AACACACAAGCTCTCCCTTGTCTTAACTGTTCTCCAAACAAATAAGTACTTCCAAGAATTTTTCGTTCGAAAGATTCAGCCTTGGTGCAATTCACCTTTTCTTTGGTGCGATAAAATGGAGGCCGCCATCACCATGGATGAGAACTTGGGACGAAGTGGGTCATTTCGAGCTGCGATGAGCATCTTTGGCGAAAGCATCAACGGGAGGAAGGCAGACAAGAACAGAGGAACTGTTCCAGCCCAAGAGAATCTGTCTTCTGAAATGAAGCAGCTAGCACAATCCGGTCTGGACAAGCTGAATGAACGCAAGGCGTACGTGGATAAAGAGAGAGCCGGCGCCGAGTCCGAGCTGTCGAGAGCGCGAGCCATGGCGAAGGAGCTTGAGCGCCAAATCGAGCAGACAACGGCCAAAGCCACGTCCCAGAGGTCGGAGCTCCAAGCAATGTGGGCAGCGAGGACGAGGAGGAAGGGCACCGACGCACCGGGCGCGGAGCGCGACGCGCGGTACGCGGAGGTGGTGCAGGAGCTGGACCAAGCCAAGAAGGAGCTGCTCCGGCTGCGGCTCGAGGTGCGGTCCGCGCCATCGACGAGATGAAGCGGCGGGTGGACGAGGCGAACGAGGAGCACGTGCTGGTGGAGCTGGCGCGCATCGAGGCCGAGCGGGAGCGCCGCGAGATCGAGGCCCAGCGCGGCGCCGAGGCCGAGCGGTTCGCCGCGGACATCGAGGCCGCGAGGGCCAGGGTCAGGGCGCTGCAGAAGGAGGCGAGCCGCGCGAGGGAGATGGAGGCGAAGCTCGCCGTGACGAACTCCGACGTGGAGGTGCTTCAGGCCGAGATGGAGCTGGTGCGCGCCATGGAGAAGAGCCACGCCAAGAGCGACGAGGCGGCGGAGGACGCAGCGAGGAGGAAGAAGGAGGAGGCGCAGGACAAGGCGCTGCTGAAGACCGCGGAGGCCGAGCTGGACGCGGCGAAGAAGGAGCTGGAGACGATCAAGGCCGGGAGCTTCCAGTTCATGACGTCCATGGACTGCACGCGCACCGAGATCATGCGCGTCGCCGAGGAGATCCGCCTGCTCAAGGCGAAGGAAAAGAAAGCGGACGCGCAGGTGCAACAGCTGAACACCAAGCTCCTCAAGGCGAAGGCGCGGTTGGAGGCCGTCACGGCGGCCGACGAGAGGTCGAAGGCGATCGTGTCCAACTTGGCGGCGGCGATGAAGCAACTGAAAGCCGAGACGGAGGCGGCGAGGATGGAGGAGGACCTCACCAAGCTGGAGAAACGGTGCGTGATCGCGGAGGCCGAGAACATCGAGAAGGAGATCGCCACGACCGAGGGACGGATCAAGCAGTCGGTGAAGGAGCTGGATGCGGCGAAAGCGTTGGAGGCCGAGGCGATGAGGAAGCTCAGGGACACCGTGGAGAGCACGATGCAGGCCAGGGCGTCGTCGGCGGCACGGCGGCAGGGGACGATGACCATCTCCCGGTTCGAGTACGAGTACCTGACCGGGCGCGCGGCGCTGGTCCGGGTGGTGACCGACAAGAAGGTGGCCGCGGCGCAGGCGTGGGTGCAGGCGCTGAAGGCCAGCGAGAAGGAGGCCGCGGCGCGCGCCGAGGCGGCGGAGCGGGAGGTGAGGGAGATGGAGGCCAGGGCGGCGCAGGTGGCGGCGGAGGCGGAGAAGACGGCGGCGGAGCAGAAGGAGCTGGAGCAGGAGCTGTACGACCTGAACGCGGCGGCGGAGAGGGACGGCCTGCAGTGCGCGTACCCGCGGCGGCGGTCGAGCAGGGTGTCGGCGACGTCGAGGAGGTCCAAGCCCCGGCGGTCGTCGGTGTCCGCGGGCGCATGGAACCCGCGCTCGCCGTCGTTCACCATCAAGAGGAAGAGGAAGGTGATGCCCAACCTCCTGAAGCTGATCAAGAATAAAAGAGGCGGCAAAAAGAACACCAACTGATCGAGCTGCGTAGATTGTCATGACCGCTCGCGACGCTGCGACCGTTTTTCTTGTTCTGATTTCCGGCGGCGCAGCACAAGAATGTTTTGATCATCAGTTTCGCGGGATTAATGGCACTGATACTGTATACTTGGGCTAGATGTAAGTACATATTAAGCTGGCCATCCGTTCACTACATAATGTAACCTGCACGTTCCTAAATGGATGGCTGGACGTCAACAAGTGACGAGTTTTGTGTGGTCTGTTGGATAGGATGGATGGCTTGGATCAGTTGTTGGTTATTGCCCTAGCAGAGTTAAAATTAAACTCGTGTTCATCAGCTTTAAGGGGGCTTTGTTGACCTTGTTACCCAAATCAACCATACC]
consensusID : consensus_1767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence
[TTCCTAAATGGATGGCCTGGACGTCAACAAGTGACGAGTTTTGTGTGGTCTGTTGAGATAGGTATGGATGGCTTGGACTACAGTTGTTGGTTACTCCCCCCTAGCCAGAGTTAAAATTAAACTCGTCGTTCATCCAGCTTTAAAAGCGG]
[+] EMBL BI811556 [TTCCTAAATGGATGGCCTGGACGTCAACAAGTGACGAGTTTTGTGTGGTCTGTTGAGATAGGTATGGATGGCTTGGACTACAGTTGTTGGTTACTCCCCCCTAGCCAGAGTTAAAATTAAACTCGTCGTTCATCCAGCTTTAAAAGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1767#0 AACACACAAGCTCTCCCTTGTCTTAACTGTTCTCCAAACAAATAAGTACTTCCAAGAATT 60
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 TTTCGTTCGAAAGATTCAGCCTTGGTGCAATTCACCTTTTCTTTGGTGCGATAAAATGGA 120
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GGCCGCCATCACCATGGATGAGAACTTGGGACGAAGTGGGTCATTTCGAGCTGCGATGAG 180
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 CATCTTTGGCGAAAGCATCAACGGGAGGAAGGCAGACAAGAACAGAGGAACTGTTCCAGC 240
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 CCAAGAGAATCTGTCTTCTGAAATGAAGCAGCTAGCACAATCCGGTCTGGACAAGCTGAA 300
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 TGAACGCAAGGCGTACGTGGATAAAGAGAGAGCCGGCGCCGAGTCCGAGCTGTCGAGAGC 360
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GCGAGCCATGGCGAAGGAGCTTGAGCGCCAAATCGAGCAGACAACGGCCAAAGCCACGTC 420
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 CCAGAGGTCGGAGCTCCAAGCAATGTGGGCAGCGAGGACGAGGAGGAAGGGCACCGACGC 480
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 ACCGGGCGCGGAGCGCGACGCGCGGTACGCGGAGGTGGTGCAGGAGCTGGACCAAGCCAA 540
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GAAGGAGCTGCTCCGGCTGCGGCTCGAGGTGCGGTCCGCGCCATCGACGAGATGAAGCGG 600
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 CGGGTGGACGAGGCGAACGAGGAGCACGTGCTGGTGGAGCTGGCGCGCATCGAGGCCGAG 660
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 CGGGAGCGCCGCGAGATCGAGGCCCAGCGCGGCGCCGAGGCCGAGCGGTTCGCCGCGGAC 720
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 ATCGAGGCCGCGAGGGCCAGGGTCAGGGCGCTGCAGAAGGAGGCGAGCCGCGCGAGGGAG 780
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 ATGGAGGCGAAGCTCGCCGTGACGAACTCCGACGTGGAGGTGCTTCAGGCCGAGATGGAG 840
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 CTGGTGCGCGCCATGGAGAAGAGCCACGCCAAGAGCGACGAGGCGGCGGAGGACGCAGCG 900
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 AGGAGGAAGAAGGAGGAGGCGCAGGACAAGGCGCTGCTGAAGACCGCGGAGGCCGAGCTG 960
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GACGCGGCGAAGAAGGAGCTGGAGACGATCAAGGCCGGGAGCTTCCAGTTCATGACGTCC 1020
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 ATGGACTGCACGCGCACCGAGATCATGCGCGTCGCCGAGGAGATCCGCCTGCTCAAGGCG 1080
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 AAGGAAAAGAAAGCGGACGCGCAGGTGCAACAGCTGAACACCAAGCTCCTCAAGGCGAAG 1140
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GCGCGGTTGGAGGCCGTCACGGCGGCCGACGAGAGGTCGAAGGCGATCGTGTCCAACTTG 1200
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GCGGCGGCGATGAAGCAACTGAAAGCCGAGACGGAGGCGGCGAGGATGGAGGAGGACCTC 1260
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 ACCAAGCTGGAGAAACGGTGCGTGATCGCGGAGGCCGAGAACATCGAGAAGGAGATCGCC 1320
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 ACGACCGAGGGACGGATCAAGCAGTCGGTGAAGGAGCTGGATGCGGCGAAAGCGTTGGAG 1380
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GCCGAGGCGATGAGGAAGCTCAGGGACACCGTGGAGAGCACGATGCAGGCCAGGGCGTCG 1440
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 TCGGCGGCACGGCGGCAGGGGACGATGACCATCTCCCGGTTCGAGTACGAGTACCTGACC 1500
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GGGCGCGCGGCGCTGGTCCGGGTGGTGACCGACAAGAAGGTGGCCGCGGCGCAGGCGTGG 1560
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GTGCAGGCGCTGAAGGCCAGCGAGAAGGAGGCCGCGGCGCGCGCCGAGGCGGCGGAGCGG 1620
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GAGGTGAGGGAGATGGAGGCCAGGGCGGCGCAGGTGGCGGCGGAGGCGGAGAAGACGGCG 1680
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GCGGAGCAGAAGGAGCTGGAGCAGGAGCTGTACGACCTGAACGCGGCGGCGGAGAGGGAC 1740
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GGCCTGCAGTGCGCGTACCCGCGGCGGCGGTCGAGCAGGGTGTCGGCGACGTCGAGGAGG 1800
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 TCCAAGCCCCGGCGGTCGTCGGTGTCCGCGGGCGCATGGAACCCGCGCTCGCCGTCGTTC 1860
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 ACCATCAAGAGGAAGAGGAAGGTGATGCCCAACCTCCTGAAGCTGATCAAGAATAAAAGA 1920
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GGCGGCAAAAAGAACACCAACTGATCGAGCTGCGTAGATTGTCATGACCGCTCGCGACGC 1980
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 TGCGACCGTTTTTCTTGTTCTGATTTCCGGCGGCGCAGCACAAGAATGTTTTGATCATCA 2040
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GTTTCGCGGGATTAATGGCACTGATACTGTATACTTGGGCTAGATGTAAGTACATATTAA 2100
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 GCTGGCCATCCGTTCACTACATAATGTAACCTGCACGTTCCTAAATGGATGGC-TGGACG 2159
consensus_1767#1 -------------------------------------TTCCTAAATGGATGGCCTGGACG 23
**************** ******
consensus_1767#0 TCAACAAGTGACGAGTTTTGTGTGGTCTGTTG-GATAGG-ATGGATGGCTTGGAT--CAG 2215
consensus_1767#1 TCAACAAGTGACGAGTTTTGTGTGGTCTGTTGAGATAGGTATGGATGGCTTGGACTACAG 83
******************************** ****** ************** ***
consensus_1767#0 TTGTTGGTTATTGCCC--TAGC-AGAGTTAAAATTAAACTCGT-GTTCATC-AGCTTTAA 2270
consensus_1767#1 TTGTTGGTTACTCCCCCCTAGCCAGAGTTAAAATTAAACTCGTCGTTCATCCAGCTTTAA 143
********** * *** **** ******************** ******* ********
consensus_1767#0 GGGGGCTTTGTTGACCTTGTTACCCAAATCAACCATACC 2309
consensus_1767#1 AAGCGG--------------------------------- 149
* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||