These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1685 fasta sequence [CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCCGCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCGCGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGCCTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACCCCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAATGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGATGCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGCAACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAAAGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATCAAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGTTTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCGAATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATTTCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGATCTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAATGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTATTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGGATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAAGGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGAAGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTTTTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCATCAATTAATCTGCATTGTTA] [+] EMBL AK064123 [CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCCGCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCGCGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGCCTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACCCCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAATGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGATGCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGCAACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAAAGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATCAAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGTTTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCGAATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATTTCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGATCTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAATGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTATTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGGATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAAGGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGAAGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTTTTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCATCAATTAATCTGCATTGTTA] consensusID : consensus_1769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [TACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTATCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGGCATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTATTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAAAAAAAAACTC] [-] EMBL CF306973 [TACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTATCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGGCATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTATTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAAAAAAAAACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1769#0 CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCC 60 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 GCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCG 120 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 CGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGC 180 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 CTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACC 240 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 CCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAA 300 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 TGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGAT 360 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 GCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGC 420 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 AACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAA 480 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 AGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATC 540 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 AAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGT 600 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 TTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCG 660 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 AATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATT 720 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 TCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGAT 780 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 CTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAA 840 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 TGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTA 900 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 TTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGG 960 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 ATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAA 1020 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 GGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGA 1080 consensus_1769#1 ------------------------------------------------------------ consensus_1769#0 AGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGG 1140 consensus_1769#1 ------------------------------------------------------TACAGG 6 ****** consensus_1769#0 CTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTC 1200 consensus_1769#1 CTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTC 66 ************************************************************ consensus_1769#0 CTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTT 1260 consensus_1769#1 CTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTT 126 ************************************************************ consensus_1769#0 GTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCA 1320 consensus_1769#1 GTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCA 186 ************************************************************ consensus_1769#0 CAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGG------------ 1368 consensus_1769#1 CAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTA 246 ************************************************ consensus_1769#0 ------------------------------------------------------------ consensus_1769#1 TCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGG 306 consensus_1769#0 ---------------ATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTAC 1413 consensus_1769#1 CATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTAC 366 ********************************************* consensus_1769#0 TTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACT 1473 consensus_1769#1 TTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACT 426 ************************************************************ consensus_1769#0 GCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTT 1533 consensus_1769#1 GCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTT 486 ************************************************************ consensus_1769#0 AATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTT 1593 consensus_1769#1 AATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTA 546 *********************************************************** consensus_1769#0 TTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTG 1653 consensus_1769#1 TTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAA------AA 600 ***************************************** * consensus_1769#0 GTGATCTTATCATCAATTAATCTGCATTGTTA 1685 consensus_1769#1 AAAAACTC------------------------ 608 * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||