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Oryza sativa
cluster # 1769 cluster # 1769       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1769#0 length = 1685 sequences # 1  
consensus_1769#1 length = 608 sequences # 1  

consensusID : consensus_1769#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1685
fasta sequence
                              [CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCCGCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCGCGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGCCTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACCCCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAATGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGATGCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGCAACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAAAGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATCAAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGTTTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCGAATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATTTCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGATCTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAATGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTATTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGGATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAAGGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGAAGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTTTTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCATCAATTAATCTGCATTGTTA]

[+] EMBL AK064123             [CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCCGCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCGCGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGCCTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACCCCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAATGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGATGCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGCAACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAAAGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATCAAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGTTTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCGAATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATTTCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGATCTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAATGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTATTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGGATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAAGGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGAAGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTTTTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCATCAATTAATCTGCATTGTTA]


>consensus_1769#0 CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCC GCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCG CGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGC CTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACC CCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAA TGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGAT GCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGC AACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAA AGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATC AAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGT TTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCG AATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATT TCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGAT CTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAA TGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTA TTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGG ATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAA GGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGA AGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGG CTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTC CTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTT GTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCA CAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGATTCGATGTTGT TGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCA ATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTG TGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTAT CTTCCGAAGTTTGAATGAATCAAACTCATTTTTTTCTGCACTGGAAAGTTGAATATATAT TGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCATCAATTAATCTGCAT TGTTA



consensusID : consensus_1769#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [TACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTATCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGGCATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTATTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAAAAAAAAACTC]

[-] EMBL CF306973             [TACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTATCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGGCATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTATTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAAAAAAAAACTC]


>consensus_1769#1 TACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAG CAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCC CTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCAT TCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCC GGTTTATCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGG CACAGGCATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCA AGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTA AAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCT TCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTC ATTTTATTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAAAA AAAAACTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1769#0      CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCC 60
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      GCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCG 120
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      CGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGC 180
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      CTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACC 240
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      CCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAA 300
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGAT 360
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      GCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGC 420
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAA 480
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATC 540
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGT 600
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCG 660
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATT 720
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGAT 780
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      CTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAA 840
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTA 900
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGG 960
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      ATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAA 1020
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      GGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGA 1080
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGG 1140
consensus_1769#1      ------------------------------------------------------TACAGG 6
                                                                            ******

consensus_1769#0      CTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTC 1200
consensus_1769#1      CTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTC 66
                      ************************************************************

consensus_1769#0      CTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTT 1260
consensus_1769#1      CTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTT 126
                      ************************************************************

consensus_1769#0      GTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCA 1320
consensus_1769#1      GTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCA 186
                      ************************************************************

consensus_1769#0      CAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGG------------ 1368
consensus_1769#1      CAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTA 246
                      ************************************************            

consensus_1769#0      ------------------------------------------------------------
consensus_1769#1      TCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGG 306
                                                                                  

consensus_1769#0      ---------------ATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTAC 1413
consensus_1769#1      CATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTAC 366
                                     *********************************************

consensus_1769#0      TTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACT 1473
consensus_1769#1      TTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACT 426
                      ************************************************************

consensus_1769#0      GCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTT 1533
consensus_1769#1      GCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTT 486
                      ************************************************************

consensus_1769#0      AATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTT 1593
consensus_1769#1      AATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTA 546
                      *********************************************************** 

consensus_1769#0      TTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTG 1653
consensus_1769#1      TTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAA------AA 600
                      *****************************************          *        

consensus_1769#0      GTGATCTTATCATCAATTAATCTGCATTGTTA 1685
consensus_1769#1      AAAAACTC------------------------ 608
                         * **                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)