cluster # 18

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Oryza sativa
cluster # 18 cluster # 18 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_18#0 length = 521 sequences # 1

consensus_18#1 length = 386 sequences # 1

consensusID : consensus_18#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [CCTAAAGGAATAAGCTTGCGGCCAGGCATCGAAACGACGCTCACGTGCCAGCTGAAAGGCGGCGATCAGATTTTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCAGGCGCTCTGCATCCATATCCAGCCAACCTAGCAGATCGCTCAGCTCGCCGGCCTCGACGAGGCGCCTCCAGGTTCCGGTACCCAGGTGGGGTAAGTCGAGCCCCTGCTTGCCGCTCAGCCAGGTCAGGCGTGCCAGAAACTGCTGTTCGCACGCAGTTGCAGGGTGCCAGCAACTTAGCGAATGGTAGTCGGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGTTCGAAGCGAGGGATGGTGAGGCCGGCGAGGGCAATGGTGATCTGGTCGCCGGGGCGTACATCATCGGCACCNCAGCGTTGCAAGGAGCCAAGGCTGACGCGGGCGATGCGTCGGTCATCGACGTGCACCGGGTCCAACTGCAGCACCGGTGTTATCCGGCCGCTGC]

[+] EMBL BI305377             [CCTAAAGGAATAAGCTTGCGGCCAGGCATCGAAACGACGCTCACGTGCCAGCTGAAAGGCGGCGATCAGATTTTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCAGGCGCTCTGCATCCATATCCAGCCAACCTAGCAGATCGCTCAGCTCGCCGGCCTCGACGAGGCGCCTCCAGGTTCCGGTACCCAGGTGGGGTAAGTCGAGCCCCTGCTTGCCGCTCAGCCAGGTCAGGCGTGCCAGAAACTGCTGTTCGCACGCAGTTGCAGGGTGCCAGCAACTTAGCGAATGGTAGTCGGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGTTCGAAGCGAGGGATGGTGAGGCCGGCGAGGGCAATGGTGATCTGGTCGCCGGGGCGTACATCATCGGCACCNCAGCGTTGCAAGGAGCCAAGGCTGACGCGGGCGATGCGTCGGTCATCGACGTGCACCGGGTCCAACTGCAGCACCGGTGTTATCCGGCCGCTGC]




>consensus_18#0
CCTAAAGGAATAAGCTTGCGGCCAGGCATCGAAACGACGCTCACGTGCCAGCTGAAAGGC
GGCGATCAGATTTTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCAGGCGCTCTGC
ATCCATATCCAGCCAACCTAGCAGATCGCTCAGCTCGCCGGCCTCGACGAGGCGCCTCCA
GGTTCCGGTACCCAGGTGGGGTAAGTCGAGCCCCTGCTTGCCGCTCAGCCAGGTCAGGCG
TGCCAGAAACTGCTGTTCGCACGCAGTTGCAGGGTGCCAGCAACTTAGCGAATGGTAGTC
GGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGTTCGAA
GCGAGGGATGGTGAGGCCGGCGAGGGCAATGGTGATCTGGTCGCCGGGGCGTACATCATC
GGCACCNCAGCGTTGCAAGGAGCCAAGGCTGACGCGGGCGATGCGTCGGTCATCGACGTG
CACCGGGTCCAACTGCAGCACCGGTGTTATCCGGCCGCTGC

consensusID : consensus_18#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [GGGGGAATAAGCTTGCTGGCAGCCATAGGAACGACGCTCACGTGCCAGCTGAAAGGCGGCGATCATATTGTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCACGCGCTCATGCATCCATATACACCCAACCTATCAAATCGCTCACCTGGCCGGCCTCGACAAGGAGCCTCCAAGCTCCAGTACCCAGGTGGGGAAAGCCCAGCCCCTGCTTGCCAATCATGCAGGGCAAGCGGGCCAAAAACTGCTGTCCACACGCAGGGACAGGGGGCCAGCAACTTAGCGAATGGTAGCTCTGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGATCTAACCCAGGGATGGTGATGCCGGCAAGGGC]

[+] EMBL BI305234             [GGGGGAATAAGCTTGCTGGCAGCCATAGGAACGACGCTCACGTGCCAGCTGAAAGGCGGCGATCATATTGTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCACGCGCTCATGCATCCATATACACCCAACCTATCAAATCGCTCACCTGGCCGGCCTCGACAAGGAGCCTCCAAGCTCCAGTACCCAGGTGGGGAAAGCCCAGCCCCTGCTTGCCAATCATGCAGGGCAAGCGGGCCAAAAACTGCTGTCCACACGCAGGGACAGGGGGCCAGCAACTTAGCGAATGGTAGCTCTGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGATCTAACCCAGGGATGGTGATGCCGGCAAGGGC]




>consensus_18#1
GGGGGAATAAGCTTGCTGGCAGCCATAGGAACGACGCTCACGTGCCAGCTGAAAGGCGGC
GATCATATTGTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCACGCGCTCATGCAT
CCATATACACCCAACCTATCAAATCGCTCACCTGGCCGGCCTCGACAAGGAGCCTCCAAG
CTCCAGTACCCAGGTGGGGAAAGCCCAGCCCCTGCTTGCCAATCATGCAGGGCAAGCGGG
CCAAAAACTGCTGTCCACACGCAGGGACAGGGGGCCAGCAACTTAGCGAATGGTAGCTCT
GCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGATCTAAC
CCAGGGATGGTGATGCCGGCAAGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_18#0      CCTAAAGGAATAAGCTTGCGGCCAGGCATCGAAACGACGCTCACGTGCCAGCTGAAAGGC 60
consensus_18#1      ---GGGGGAATAAGCTTGCTGGCAGCCATAGGAACGACGCTCACGTGCCAGCTGAAAGGC 57
                          ************* * *** *** * ****************************

consensus_18#0      GGCGATCAGATTTTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCAGGCGCTC-TG 119
consensus_18#1      GGCGATCATATTGTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCACGCGCTCATG 117
                    ******** *** ************************************* ****** **

consensus_18#0      CATCCATATCCAGCCAACCTAGCAGATCGCTCAGCTCGCCGGCCTCGACGAGGCGCCTCC 179
consensus_18#1      CATCCATATACACCCAACCTATCAAATCGCTCACCTGGCCGGCCTCGACAAGGAGCCTCC 177
                    ********* ** ******** ** ******** ** ************ *** ******

consensus_18#0      AGGTTCCGGTACCCAGGTGGGGTAAGTCGAGCCCCTGCTTGCCGCTCAGCCAGGTCAGGC 239
consensus_18#1      AAGCTCCAGTACCCAGGTGGGGAAAGCCCAGCCCCTGCTTGCCAATCATGCAGGGCAAGC 237
                    * * *** ************** *** * **************  ***  **** ** **

consensus_18#0      GTGCCAGAAACTGCTGTTCGCACGCAGTTGCAGGGTGCCAGCAACTTAGCGAATGGTAG- 298
consensus_18#1      GGGCCAAAAACTGCTGTCCACACGCAGGGACAGGGGGCCAGCAACTTAGCGAATGGTAGC 297
                    * **** ********** * *******   ***** *********************** 

consensus_18#0      TCGGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGTTCG 358
consensus_18#1      TCTGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGATCT 357
                    ** ***************************************************** ** 

consensus_18#0      AAGCGAGGGATGGTGAGGCCGGCGAGGGCAATGGTGATCTGGTCGCCGGGGCGTACATCA 418
consensus_18#1      AACCCAGGGATGGTGATGCCGGCAAGGGC------------------------------- 386
                    ** * *********** ****** *****                               

consensus_18#0      TCGGCACCNCAGCGTTGCAAGGAGCCAAGGCTGACGCGGGCGATGCGTCGGTCATCGACG 478
consensus_18#1      ------------------------------------------------------------
                                                                                

consensus_18#0      TGCACCGGGTCCAACTGCAGCACCGGTGTTATCCGGCCGCTGC 521
consensus_18#1      -------------------------------------------