These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_18#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [CCTAAAGGAATAAGCTTGCGGCCAGGCATCGAAACGACGCTCACGTGCCAGCTGAAAGGCGGCGATCAGATTTTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCAGGCGCTCTGCATCCATATCCAGCCAACCTAGCAGATCGCTCAGCTCGCCGGCCTCGACGAGGCGCCTCCAGGTTCCGGTACCCAGGTGGGGTAAGTCGAGCCCCTGCTTGCCGCTCAGCCAGGTCAGGCGTGCCAGAAACTGCTGTTCGCACGCAGTTGCAGGGTGCCAGCAACTTAGCGAATGGTAGTCGGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGTTCGAAGCGAGGGATGGTGAGGCCGGCGAGGGCAATGGTGATCTGGTCGCCGGGGCGTACATCATCGGCACCNCAGCGTTGCAAGGAGCCAAGGCTGACGCGGGCGATGCGTCGGTCATCGACGTGCACCGGGTCCAACTGCAGCACCGGTGTTATCCGGCCGCTGC] [+] EMBL BI305377 [CCTAAAGGAATAAGCTTGCGGCCAGGCATCGAAACGACGCTCACGTGCCAGCTGAAAGGCGGCGATCAGATTTTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCAGGCGCTCTGCATCCATATCCAGCCAACCTAGCAGATCGCTCAGCTCGCCGGCCTCGACGAGGCGCCTCCAGGTTCCGGTACCCAGGTGGGGTAAGTCGAGCCCCTGCTTGCCGCTCAGCCAGGTCAGGCGTGCCAGAAACTGCTGTTCGCACGCAGTTGCAGGGTGCCAGCAACTTAGCGAATGGTAGTCGGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGTTCGAAGCGAGGGATGGTGAGGCCGGCGAGGGCAATGGTGATCTGGTCGCCGGGGCGTACATCATCGGCACCNCAGCGTTGCAAGGAGCCAAGGCTGACGCGGGCGATGCGTCGGTCATCGACGTGCACCGGGTCCAACTGCAGCACCGGTGTTATCCGGCCGCTGC] consensusID : consensus_18#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [GGGGGAATAAGCTTGCTGGCAGCCATAGGAACGACGCTCACGTGCCAGCTGAAAGGCGGCGATCATATTGTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCACGCGCTCATGCATCCATATACACCCAACCTATCAAATCGCTCACCTGGCCGGCCTCGACAAGGAGCCTCCAAGCTCCAGTACCCAGGTGGGGAAAGCCCAGCCCCTGCTTGCCAATCATGCAGGGCAAGCGGGCCAAAAACTGCTGTCCACACGCAGGGACAGGGGGCCAGCAACTTAGCGAATGGTAGCTCTGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGATCTAACCCAGGGATGGTGATGCCGGCAAGGGC] [+] EMBL BI305234 [GGGGGAATAAGCTTGCTGGCAGCCATAGGAACGACGCTCACGTGCCAGCTGAAAGGCGGCGATCATATTGTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCACGCGCTCATGCATCCATATACACCCAACCTATCAAATCGCTCACCTGGCCGGCCTCGACAAGGAGCCTCCAAGCTCCAGTACCCAGGTGGGGAAAGCCCAGCCCCTGCTTGCCAATCATGCAGGGCAAGCGGGCCAAAAACTGCTGTCCACACGCAGGGACAGGGGGCCAGCAACTTAGCGAATGGTAGCTCTGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGATCTAACCCAGGGATGGTGATGCCGGCAAGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_18#0 CCTAAAGGAATAAGCTTGCGGCCAGGCATCGAAACGACGCTCACGTGCCAGCTGAAAGGC 60 consensus_18#1 ---GGGGGAATAAGCTTGCTGGCAGCCATAGGAACGACGCTCACGTGCCAGCTGAAAGGC 57 ************* * *** *** * **************************** consensus_18#0 GGCGATCAGATTTTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCAGGCGCTC-TG 119 consensus_18#1 GGCGATCATATTGTCCGCTTTGCGTGGGCCAAACCCCGGAATGCGCTGCACGCGCTCATG 117 ******** *** ************************************* ****** ** consensus_18#0 CATCCATATCCAGCCAACCTAGCAGATCGCTCAGCTCGCCGGCCTCGACGAGGCGCCTCC 179 consensus_18#1 CATCCATATACACCCAACCTATCAAATCGCTCACCTGGCCGGCCTCGACAAGGAGCCTCC 177 ********* ** ******** ** ******** ** ************ *** ****** consensus_18#0 AGGTTCCGGTACCCAGGTGGGGTAAGTCGAGCCCCTGCTTGCCGCTCAGCCAGGTCAGGC 239 consensus_18#1 AAGCTCCAGTACCCAGGTGGGGAAAGCCCAGCCCCTGCTTGCCAATCATGCAGGGCAAGC 237 * * *** ************** *** * ************** *** **** ** ** consensus_18#0 GTGCCAGAAACTGCTGTTCGCACGCAGTTGCAGGGTGCCAGCAACTTAGCGAATGGTAG- 298 consensus_18#1 GGGCCAAAAACTGCTGTCCACACGCAGGGACAGGGGGCCAGCAACTTAGCGAATGGTAGC 297 * **** ********** * ******* ***** *********************** consensus_18#0 TCGGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGTTCG 358 consensus_18#1 TCTGCTGGGTTGGGTGCTTCGATGGTGGGCCGCTGCTGCGCGCGCCAAACGACGCGATCT 357 ** ***************************************************** ** consensus_18#0 AAGCGAGGGATGGTGAGGCCGGCGAGGGCAATGGTGATCTGGTCGCCGGGGCGTACATCA 418 consensus_18#1 AACCCAGGGATGGTGATGCCGGCAAGGGC------------------------------- 386 ** * *********** ****** ***** consensus_18#0 TCGGCACCNCAGCGTTGCAAGGAGCCAAGGCTGACGCGGGCGATGCGTCGGTCATCGACG 478 consensus_18#1 ------------------------------------------------------------ consensus_18#0 TGCACCGGGTCCAACTGCAGCACCGGTGTTATCCGGCCGCTGC 521 consensus_18#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||