cluster # 1815

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Oryza sativa
cluster # 1815 cluster # 1815 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1815#0 length = 410 sequences # 1

consensus_1815#1 length = 261 sequences # 1

consensusID : consensus_1815#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [TGGATCCAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTGCTGCAGTCGAGCGAGGCCAAGAAAGCCACCCGAGTCCCCTTCCTCCCATAGATCCAGCTCCCGCATTCTGATTGATGATGGAGTTAGGAGATTGCCTGAACCGATGGAGACATTGCCAACCCGTGGAAGGAGCAACACGAAGAAGGTGAAGGCGAGTGGGGGCAGCACGGATGAGGCGAGGCAGCTGGAGGCGAAGGCCTTGTCCTTGTACTCACGGAGAAATCACAAGCGTAGAACCACACAAGAGATCACTTTCTTTGGGCTCATATGGAAGAGAAGCAAGAATGACCTACGTAGCAGCAAGCTCAAGGCAGATGATGTTATTCTTAGAAGCAGGGNTGGCGTAGGTTCGNCGTTGAAACCGA]

[+] EMBL AU062420             [TGGATCCAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTGCTGCAGTCGAGCGAGGCCAAGAAAGCCACCCGAGTCCCCTTCCTCCCATAGATCCAGCTCCCGCATTCTGATTGATGATGGAGTTAGGAGATTGCCTGAACCGATGGAGACATTGCCAACCCGTGGAAGGAGCAACACGAAGAAGGTGAAGGCGAGTGGGGGCAGCACGGATGAGGCGAGGCAGCTGGAGGCGAAGGCCTTGTCCTTGTACTCACGGAGAAATCACAAGCGTAGAACCACACAAGAGATCACTTTCTTTGGGCTCATATGGAAGAGAAGCAAGAATGACCTACGTAGCAGCAAGCTCAAGGCAGATGATGTTATTCTTAGAAGCAGGGNTGGCGTAGGTTCGNCGTTGAAACCGA]




>consensus_1815#0
TGGATCCAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTGCTGCAGTCGAGCGAG
GCCAAGAAAGCCACCCGAGTCCCCTTCCTCCCATAGATCCAGCTCCCGCATTCTGATTGA
TGATGGAGTTAGGAGATTGCCTGAACCGATGGAGACATTGCCAACCCGTGGAAGGAGCAA
CACGAAGAAGGTGAAGGCGAGTGGGGGCAGCACGGATGAGGCGAGGCAGCTGGAGGCGAA
GGCCTTGTCCTTGTACTCACGGAGAAATCACAAGCGTAGAACCACACAAGAGATCACTTT
CTTTGGGCTCATATGGAAGAGAAGCAAGAATGACCTACGTAGCAGCAAGCTCAAGGCAGA
TGATGTTATTCTTAGAAGCAGGGNTGGCGTAGGTTCGNCGTTGAAACCGA

consensusID : consensus_1815#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [GCATATGGTTCTTAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTNCTGCAGTCGAGCGAGGNCAAGAAAGCCACCCGANTCCCNTTCCTCCCATAGATCCAGCTCNNGCATTCTNATTGATGATGGAGTTAGGAGATTNCNTNAACCNATGGAGACATTNCCAACCCGTGGAAGGAGCAACACGATGAAGGTNAAGGCGAGTNGGGGNANCACGGATTAGGCGANNCAGCTNTTAGGCGAAGGGCTTNTCCTTTT]

[+] EMBL AU068511             [GCATATGGTTCTTAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTNCTGCAGTCGAGCGAGGNCAAGAAAGCCACCCGANTCCCNTTCCTCCCATAGATCCAGCTCNNGCATTCTNATTGATGATGGAGTTAGGAGATTNCNTNAACCNATGGAGACATTNCCAACCCGTGGAAGGAGCAACACGATGAAGGTNAAGGCGAGTNGGGGNANCACGGATTAGGCGANNCAGCTNTTAGGCGAAGGGCTTNTCCTTTT]




>consensus_1815#1
GCATATGGTTCTTAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTNCTGCAGTCG
AGCGAGGNCAAGAAAGCCACCCGANTCCCNTTCCTCCCATAGATCCAGCTCNNGCATTCT
NATTGATGATGGAGTTAGGAGATTNCNTNAACCNATGGAGACATTNCCAACCCGTGGAAG
GAGCAACACGATGAAGGTNAAGGCGAGTNGGGGNANCACGGATTAGGCGANNCAGCTNTT
AGGCGAAGGGCTTNTCCTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1815#0      -----TGGATCC-AAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTGCTGCAGTCG 54
consensus_1815#1      GCATATGGTTCTTAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTNCTGCAGTCG 60
                           *** **  ************************************* *********

consensus_1815#0      AGCGAGGCCAAGAAAGCCACCCGAGTCCCCTTCCTCCCATAGATCCAGCTCCCGCATTCT 114
consensus_1815#1      AGCGAGGNCAAGAAAGCCACCCGANTCCCNTTCCTCCCATAGATCCAGCTCNNGCATTCT 120
                      ******* **************** **** *********************  *******

consensus_1815#0      GATTGATGATGGAGTTAGGAGATTGCCTGAACCGATGGAGACATTGCCAACCCGTGGAAG 174
consensus_1815#1      NATTGATGATGGAGTTAGGAGATTNCNTNAACCNATGGAGACATTNCCAACCCGTGGAAG 180
                       *********************** * * **** *********** **************

consensus_1815#0      GAGCAACACGAAGAAGGTGAAGGCGAGTGGGGGCAGCACGGATGAGGCGAGGCAGCTGG- 233
consensus_1815#1      GAGCAACACGATGAAGGTNAAGGCGAGTNGGGGNANCACGGATTAGGCGANNCAGCTNTT 240
                      *********** ****** ********* **** * ******* ******  *****   

consensus_1815#0      AGGCGAAGGCCTTGTCCTTGTACTCACGGAGAAATCACAAGCGTAGAACCACACAAGAGA 293
consensus_1815#1      AGGCGAAGGGCTTNTCCTTTT--------------------------------------- 261
                      ********* *** ***** *                                       

consensus_1815#0      TCACTTTCTTTGGGCTCATATGGAAGAGAAGCAAGAATGACCTACGTAGCAGCAAGCTCA 353
consensus_1815#1      ------------------------------------------------------------
                                                                                  

consensus_1815#0      AGGCAGATGATGTTATTCTTAGAAGCAGGGNTGGCGTAGGTTCGNCGTTGAAACCGA 410
consensus_1815#1      ---------------------------------------------------------