cluster # 1825

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Oryza sativa
cluster # 1825 cluster # 1825 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1825#0 length = 481 sequences # 1

consensus_1825#1 length = 468 sequences # 1

consensusID : consensus_1825#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [TTTTTTTTTTGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTTGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGTTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACCGAACTTAACAATGCTCACTTGACACGGCTCGAATAAACAATGCAGTGTGACAGCACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGAAGTATCTCAGTTTTCATACAAGAGCTGCATAAAAAAATGAACTGGAAAAAATGGAAATAGCAGATAAAAGCAAAATTGCAGGGCATGAGGTACTTCAGGATTCCTGATTGTTTCTGTTTCAGTGACCTTTCA]

[+] EMBL CF324856             [TTTTTTTTTTGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTTGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGTTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACCGAACTTAACAATGCTCACTTGACACGGCTCGAATAAACAATGCAGTGTGACAGCACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGAAGTATCTCAGTTTTCATACAAGAGCTGCATAAAAAAATGAACTGGAAAAAATGGAAATAGCAGATAAAAGCAAAATTGCAGGGCATGAGGTACTTCAGGATTCCTGATTGTTTCTGTTTCAGTGACCTTTCA]




>consensus_1825#0
TTTTTTTTTTGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATT
TGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGTTGACAAAAGTTGGATAAACAAGA
GGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTG
GAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCC
CCAGACCGAACTTAACAATGCTCACTTGACACGGCTCGAATAAACAATGCAGTGTGACAG
CACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGAAGTATCTCAGT
TTTCATACAAGAGCTGCATAAAAAAATGAACTGGAAAAAATGGAAATAGCAGATAAAAGC
AAAATTGCAGGGCATGAGGTACTTCAGGATTCCTGATTGTTTCTGTTTCAGTGACCTTTC
A

consensusID : consensus_1825#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [TTTTTTTTTTATGGAGCACAAAGAAATCACACACAGGTAACAGGGCATGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGGTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACGAACTTAACAAGTGTCACTTGACACGGCTCGAATAAACAACGCAGGTGTGACAGCACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGTGGCCTCCCACAACTTCCCAAATACATATCTCATAAAAACTACAAGGACCTGTTGATCCATAGATTTCCATCAAACATATCAG]

[-] EMBL BI812736             [TTTTTTTTTTATGGAGCACAAAGAAATCACACACAGGTAACAGGGCATGATTCTCAACTCCTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTGGTACATGAAAACAAGGGGAAAAGGCTGCATAACGGTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCCCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACGCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACGAACTTAACAAGTGTCACTTGACACGGCTCGAATAAACAACGCAGGTGTGACAGCACAGTTCTGCGTGAATCACACACTCAGATCCTGCAAAAACGAATGGGTGGCCTCCCACAACTTCCCAAATACATATCTCATAAAAACTACAAGGACCTGTTGATCCATAGATTTCCATCAAACATATCAG]




>consensus_1825#1
TTTTTTTTTTATGGAGCACAAAGAAATCACACACAGGTAACAGGGCATGATTCTCAACTC
CTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTGGTACATGAAAACAAGGGGAAA
AGGCTGCATAACGGTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGCC
CTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACACG
CCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACGAACTTAACAAGTGTCA
CTTGACACGGCTCGAATAAACAACGCAGGTGTGACAGCACAGTTCTGCGTGAATCACACA
CTCAGATCCTGCAAAAACGAATGGGTGGCCTCCCACAACTTCCCAAATACATATCTCATA
AAAACTACAAGGACCTGTTGATCCATAGATTTCCATCAAACATATCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1825#0      --------------------------------------TTTTTTTTTTGATTCTCAACTC 22
consensus_1825#1      TTTTTTTTTTATGGAGCACAAAGAAATCACACACAGGTAACAGGGCATGATTCTCAACTC 60
                                                                     *************

consensus_1825#0      CTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATTTGGTACATGAAAACAAGGGGAA 82
consensus_1825#1      CTGAATCAAGTCTAGTTTTTACTTTCTCTCTACCAATT-GGTACATGAAAACAAGGGGAA 119
                      ************************************** *********************

consensus_1825#0      AAGGCTGCATAACGTTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGC 142
consensus_1825#1      AAGGCTGCATAACGGTGACAAAAGTTGGATAAACAAGAGGGATTCGCTGCAATTCACAGC 179
                      ************** *********************************************

consensus_1825#0      CCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACAC 202
consensus_1825#1      CCTGGATCATCGCTGGATCGGATCCAAGACTTCCTGTGGAGCCAGCAGCGCGTGAAACAC 239
                      ************************************************************

consensus_1825#0      GCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGACCGAACTTAACAATGCT 262
consensus_1825#1      GCCCAGTCGCCATCTGAAATGAAAAAGCTCTTCCGGCCCCAGAC-GAACTTAACAAGTGT 298
                      ******************************************** ***********   *

consensus_1825#0      CACTTGACACGGCTCGAATAAACAATGCAG-TGTGACAGCACAGTTCTGCGTGAATCACA 321
consensus_1825#1      CACTTGACACGGCTCGAATAAACAACGCAGGTGTGACAGCACAGTTCTGCGTGAATCACA 358
                      ************************* **** *****************************

consensus_1825#0      CACTCAGATCCTGCAAAAACGAATGGGAAGTATCTCAGTTTTCATACAAGAGCTGCATAA 381
consensus_1825#1      CACTCAGATCCTGCAAAAACGAATGGGTGGCCTCCCAC------------AACTTCCCAA 406
                      ***************************  *  ** **             * ** *  **

consensus_1825#0      AAAAATGAACTGGAAAAAATGGAAATAGCAGATAAAAGCAAAATTGCAGGGCATGAGGTA 441
consensus_1825#1      ATACATATCTCATAAAAACTACAAGGACCTGTTGATCCATAGATTTC----CATCAAACA 462
                      * * **       ***** *  **  * * * * *     * *** *    *** *   *

consensus_1825#0      CTTCAGGATTCCTGATTGTTTCTGTTTCAGTGACCTTTCA 481
consensus_1825#1      TATCAG---------------------------------- 468
                        ****