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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[TGCGGGAGTACAAACACTGCAAGAAAACCAGCAGGTCAACAGCATCCAAATTCCTAGATAACAAGACGCATTACCAAGTAGCCAACACCACGCCTCGATCGATCGGAACACACACACCATGTCAACCACTGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTGAACAAGAATGTGGACGCGCTCAAGGAGGAGTACCACGTCCCGCCGTCGTGGAGCGTGCAGAGGGACAAGGGCATGGTGAGGGGCGCCGATGGCCACTGGAAGTTGATGGATTACGAGGGAGAAGAAAGTAGCCAGGACAAATGACGCTGTGATCAATGTGAAATGTGAAGCTAACTAGCTTGTCCCTATGTTTCGTCATATGCTGTTTTTGCTTCCGATTGTGTGCAATCTGTGACATGCGCGTAAATTTTCTGTACCTGTAGCCTGTAGTGAAATAAATCAGTGAACCGTG]
[+] EMBL AK063136 [TGCGGGAGTACAAACACTGCAAGAAAACCAGCAGGTCAACAGCATCCAAATTCCTAGATAACAAGACGCATTACCAAGTAGCCAACACCACGCCTCGATCGATCGGAACACACACACCATGTCAACCACTGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTGAACAAGAATGTGGACGCGCTCAAGGAGGAGTACCACGTCCCGCCGTCGTGGAGCGTGCAGAGGGACAAGGGCATGGTGAGGGGCGCCGATGGCCACTGGAAGTTGATGGATTACGAGGGAGAAGAAAGTAGCCAGGACAAATGACGCTGTGATCAATGTGAAATGTGAAGCTAACTAGCTTGTCCCTATGTTTCGTCATATGCTGTTTTTGCTTCCGATTGTGTGCAATCTGTGACATGCGCGTAAATTTTCTGTACCTGTAGCCTGTAGTGAAATAAATCAGTGAACCGTG]
consensusID : consensus_1836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[TGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGCGTCGACCCAGCTGGCGGGACTGTACGAGGTGACGGCCTTCTTCTACGCCACCGCGGGCGCCGGCGGCGTGCCGGCGCCGTTCATGGTGCGGAACCGGGAGTCGAACTGGATGGGGTACGTGGCCGTGGCGACGGACGCCGGGGTGGCCGCGCTGGGCAGGCGCGACGTGGTGGTCGCGTGGCGCGGCACCGTCCGGCCCATGGAGTGGCTCAACGACCTCGACTTCACGCTCGTGTCCGCCGNCGAGGGTGCACAGGGGGTGGCTGTCCATCTACACGGCGAGCGACCCGGCGTCCAAGTACAGCAAGCTCAGCGCCAGGGAGCAGATTTCGGATGAGATCAAGAGGCTAATGGACAAGTACAAGGACGAGG]
[+] EMBL CA756437 [TGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCACTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGGCGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGCGTCGACCCAGCTGGCGGGACTGTACGAGGTGACGGCCTTCTTCTACGCCACCGCGGGCGCCGGCGGCGTGCCGGCGCCGTTCATGGTGCGGAACCGGGAGTCGAACTGGATGGGGTACGTGGCCGTGGCGACGGACGCCGGGGTGGCCGCGCTGGGCAGGCGCGACGTGGTGGTCGCGTGGCGCGGCACCGTCCGGCCCATGGAGTGGCTCAACGACCTCGACTTCACGCTCGTGTCCGCCGNCGAGGGTGCACAGGGGGTGGCTGTCCATCTACACGGCGAGCGACCCGGCGTCCAAGTACAGCAAGCTCAGCGCCAGGGAGCAGATTTCGGATGAGATCAAGAGGCTAATGGACAAGTACAAGGACGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1836#0 TGCGGGAGTACAAACACTGCAAGAAAACCAGCAGGTCAACAGCATCCAAATTCCTAGATA 60
consensus_1836#1 ------------------------------------------------------------
consensus_1836#0 ACAAGACGCATTACCAAGTAGCCAACACCACGCCTCGATCGATCGGAACACACACACCAT 120
consensus_1836#1 ------------------------------------------------------------
consensus_1836#0 GTCAACCACTGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCA 180
consensus_1836#1 ---------TGCGCCGAGGGCCGTCGCTGAGCGGTGGAGGGAGCTCCACGGCGAGGACCA 51
***************************************************
consensus_1836#0 CTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGG 240
consensus_1836#1 CTGGAAGGGCCTCCTCGACCCTCTCGACGCCGACCTCCGGCGCAGCGTCATCGGCTACGG 111
************************************************************
consensus_1836#0 CGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGG 300
consensus_1836#1 CGAGCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGG 171
************************************************************
consensus_1836#0 CGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGG-GCAAGCGCGGCGGGT 359
consensus_1836#1 CGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGGCGTCGACCCAGCTGGC 231
******************************************** * * * ** **
consensus_1836#0 TCAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTGAACAAGAATGTGGACGCGCTCAAGG 419
consensus_1836#1 G-GGACTGTACGAGGTGACGGCCTTCTTCTACGCCACCGCGGGCGCCGGCGGCGTGCCGG 290
*** * * * ** * * * * * * * * ** * **
consensus_1836#0 AGGAGTACCACGTCCCG---CCGTCGTGGAGCGTGCAGAGGGACAAGGGCATGGTGAGGG 476
consensus_1836#1 CGCCGTTCATGGTGCGGAACCGGGAGTCGAACTGGATGGGGTACGTGGCCGTGGCGACGG 350
* ** * ** * * * * ** ** * * * ** ** ** * *** ** **
consensus_1836#0 GCGCCGA--TGGCCACTGGAAGTTGATGGATTACGAGGGAGAAGAAA-GTAGC-CAGGAC 532
consensus_1836#1 ACGCCGGGGTGGCCGCGCTGGGCAGGCGCGACGTGGTGGTCGCGTGGCGCGGCACCGTCC 410
***** ***** * * * * * ** * * ** * * *
consensus_1836#0 AAATGACGCTGTGA-TCAATG--TGAAATGTGAAGCTAACTAGCTTGTCCCTATGTTTCG 589
consensus_1836#1 GGCCCATGGAGTGGCTCAACGACCTCGACTTCACGCTCGT--GTCCGCCGNCGAGGGTGC 468
* * *** **** * * * * *** * * * * *
consensus_1836#0 TCATATGCTGTTTTTGCTTCCG-ATTGTGTGCAATCTGTGACATGCGCGTAA-ATTTTCT 647
consensus_1836#1 ACAGGGGGTGGCTGTCCATCTACACGGCGAGCGACCCGGCGTCCAAGTACAGCAAGCTCA 528
** * ** * * * ** * * * ** * * * * * * **
consensus_1836#0 GTACCTGT-AGCCTGTAGTGAAATAAATCAGTGAACCG-TG------------------- 686
consensus_1836#1 GCGCCAGGGAGCAGATTTCGGATGAGATCAAGAGGCTAATGGACAAGTACAAGGACGAGG 588
* ** * *** * * * * **** * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||