cluster # 1844

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Oryza sativa
cluster # 1844 cluster # 1844 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1844#0 length = 1360 sequences # 1

consensus_1844#1 length = 547 sequences # 1

consensusID : consensus_1844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1360
fasta sequence

                              [TCCTAAACTCACCCCCGATCGAATCCCCAATTGTTCAATCTCCTCCTCCGGGATGGGGCGCCGCCGCCGCCACCGCCGCCACCACCGCCGGGACGGGACCGATCTGCTGGAGGCCGAGCCGTTGTTGGACGACTCCCACCTGATGACGGTGCGGGATCCATTGCCAGCGGCGTACATTGCAGTATGCCGTCGGGACTGGTATTCCCACTCCTACTACCGCCTGTACAAGGTGGAAGACGACTCTTCCTCCTCCTCCTCGCCGTCGTCGCCGGTGACAAAACAAGTCCTCCACCGCTTCGCTCATCTACCGACGGACGTGGCCTGCAAGACCGTCGTCTCCGTGCGCTCAAGGTGGATCGTCTCCGTCGGGGGAAACCCCGGCGGCACCGTCCTCTTCGACACCGAGACAAGGAGGGTCATCACCGGGCCGAAGCTGCTGTCCGCGAAGCTGTCGCCCGTCGCGGCGGCCGTCGGGGACAGGATCTACGTCCTCTCGAGCCGCCCCCAATACTTCGAGCCGTGGTTCGAGGTGCTCGACCTGTCCCGGGCCACGGTGGTGGCAACGGCGGACGGCCGCCACACGCTCGATGGGTGCTCGTGGGAGGCCTTGCCGGATCCCATATGCTTCCCTTGTGTGCTCTCCCCGGCTGGGTACCTCGCCCCGCCCCTCATCCTCGTCACCTCCTACGTGCTATTTCTCCCCTATCTGCTCGTGTCCGTGAATAATATGGGCAAGATGACAACCTATGCATTTGACACCGGCACTCACCGGTGGCACAAGCTGTACGACTACGGCCTGCCGTTCTTCGGCTCCGCGACGCCACTAGTAGGCATCCGTCTAGTCTCATCCGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACACCACATGTCTTATGATAAAGATATACACGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACATTGTAGTCCGCTGCAAACGGGACAAGGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCCTCTCCACCCATCGCCTTTGCTTTATCCATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTGCAAATGTATATATGTGCCATGTGCCAATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCT]

[+] EMBL AK067695             [TCCTAAACTCACCCCCGATCGAATCCCCAATTGTTCAATCTCCTCCTCCGGGATGGGGCGCCGCCGCCGCCACCGCCGCCACCACCGCCGGGACGGGACCGATCTGCTGGAGGCCGAGCCGTTGTTGGACGACTCCCACCTGATGACGGTGCGGGATCCATTGCCAGCGGCGTACATTGCAGTATGCCGTCGGGACTGGTATTCCCACTCCTACTACCGCCTGTACAAGGTGGAAGACGACTCTTCCTCCTCCTCCTCGCCGTCGTCGCCGGTGACAAAACAAGTCCTCCACCGCTTCGCTCATCTACCGACGGACGTGGCCTGCAAGACCGTCGTCTCCGTGCGCTCAAGGTGGATCGTCTCCGTCGGGGGAAACCCCGGCGGCACCGTCCTCTTCGACACCGAGACAAGGAGGGTCATCACCGGGCCGAAGCTGCTGTCCGCGAAGCTGTCGCCCGTCGCGGCGGCCGTCGGGGACAGGATCTACGTCCTCTCGAGCCGCCCCCAATACTTCGAGCCGTGGTTCGAGGTGCTCGACCTGTCCCGGGCCACGGTGGTGGCAACGGCGGACGGCCGCCACACGCTCGATGGGTGCTCGTGGGAGGCCTTGCCGGATCCCATATGCTTCCCTTGTGTGCTCTCCCCGGCTGGGTACCTCGCCCCGCCCCTCATCCTCGTCACCTCCTACGTGCTATTTCTCCCCTATCTGCTCGTGTCCGTGAATAATATGGGCAAGATGACAACCTATGCATTTGACACCGGCACTCACCGGTGGCACAAGCTGTACGACTACGGCCTGCCGTTCTTCGGCTCCGCGACGCCACTAGTAGGCATCCGTCTAGTCTCATCCGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACACCACATGTCTTATGATAAAGATATACACGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACATTGTAGTCCGCTGCAAACGGGACAAGGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCCTCTCCACCCATCGCCTTTGCTTTATCCATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTGCAAATGTATATATGTGCCATGTGCCAATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCT]




>consensus_1844#0
TCCTAAACTCACCCCCGATCGAATCCCCAATTGTTCAATCTCCTCCTCCGGGATGGGGCG
CCGCCGCCGCCACCGCCGCCACCACCGCCGGGACGGGACCGATCTGCTGGAGGCCGAGCC
GTTGTTGGACGACTCCCACCTGATGACGGTGCGGGATCCATTGCCAGCGGCGTACATTGC
AGTATGCCGTCGGGACTGGTATTCCCACTCCTACTACCGCCTGTACAAGGTGGAAGACGA
CTCTTCCTCCTCCTCCTCGCCGTCGTCGCCGGTGACAAAACAAGTCCTCCACCGCTTCGC
TCATCTACCGACGGACGTGGCCTGCAAGACCGTCGTCTCCGTGCGCTCAAGGTGGATCGT
CTCCGTCGGGGGAAACCCCGGCGGCACCGTCCTCTTCGACACCGAGACAAGGAGGGTCAT
CACCGGGCCGAAGCTGCTGTCCGCGAAGCTGTCGCCCGTCGCGGCGGCCGTCGGGGACAG
GATCTACGTCCTCTCGAGCCGCCCCCAATACTTCGAGCCGTGGTTCGAGGTGCTCGACCT
GTCCCGGGCCACGGTGGTGGCAACGGCGGACGGCCGCCACACGCTCGATGGGTGCTCGTG
GGAGGCCTTGCCGGATCCCATATGCTTCCCTTGTGTGCTCTCCCCGGCTGGGTACCTCGC
CCCGCCCCTCATCCTCGTCACCTCCTACGTGCTATTTCTCCCCTATCTGCTCGTGTCCGT
GAATAATATGGGCAAGATGACAACCTATGCATTTGACACCGGCACTCACCGGTGGCACAA
GCTGTACGACTACGGCCTGCCGTTCTTCGGCTCCGCGACGCCACTAGTAGGCATCCGTCT
AGTCTCATCCGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGC
ACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAG
CTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACACCACATGTCTTATGATAAAGA
TATACACGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGA
GGGGGAGAAGACTGATATGGACATTGTAGTCCGCTGCAAACGGGACAAGGCCTTGAAGAT
TTTCAGTTCCCATGGGTTCTCCTCTCCACCCATCGCCTTTGCTTTATCCATATAAGCAAG
ACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTGCAAATGTATATATG
TGCCATGTGCCAATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTA
CTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCT

consensusID : consensus_1844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CGTGACCGCCACCTAGGTAGCATCCGTCTAGTCTCATCCGGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACANCCACATGTCTTATGATAAAGATATACCCGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACACTTGTAGTCCGCTGCAAACGGGACAAGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCGCCTTTGCTTTATCAATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTCAAATGTATATACCCATGTCCATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCTGTTTGCCAAAAAAAA]

[+] EMBL BM038157             [CGTGACCGCCACCTAGGTAGCATCCGTCTAGTCTCATCCGGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACANCCACATGTCTTATGATAAAGATATACCCGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACACTTGTAGTCCGCTGCAAACGGGACAAGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCGCCTTTGCTTTATCAATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTCAAATGTATATACCCATGTCCATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCTGTTTGCCAAAAAAAA]




>consensus_1844#1
CGTGACCGCCACCTAGGTAGCATCCGTCTAGTCTCATCCGGCTCCTCATCTCAAGCTATC
CGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCT
ATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGA
CCGCGAACANCCACATGTCTTATGATAAAGATATACCCGAATTCTATCCAAGGAAGATGT
ATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACACTTGTA
GTCCGCTGCAAACGGGACAAGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCGCCTTTGC
TTTATCAATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACT
TGTCAAATGTATATACCCATGTCCATGTTCATTTCTCATGCTTTCTACACTACATAGGGA
AATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCTGTTTGCCA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1844#0      TCCTAAACTCACCCCCGATCGAATCCCCAATTGTTCAATCTCCTCCTCCGGGATGGGGCG 60
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      CCGCCGCCGCCACCGCCGCCACCACCGCCGGGACGGGACCGATCTGCTGGAGGCCGAGCC 120
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      GTTGTTGGACGACTCCCACCTGATGACGGTGCGGGATCCATTGCCAGCGGCGTACATTGC 180
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      AGTATGCCGTCGGGACTGGTATTCCCACTCCTACTACCGCCTGTACAAGGTGGAAGACGA 240
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      CTCTTCCTCCTCCTCCTCGCCGTCGTCGCCGGTGACAAAACAAGTCCTCCACCGCTTCGC 300
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      TCATCTACCGACGGACGTGGCCTGCAAGACCGTCGTCTCCGTGCGCTCAAGGTGGATCGT 360
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      CTCCGTCGGGGGAAACCCCGGCGGCACCGTCCTCTTCGACACCGAGACAAGGAGGGTCAT 420
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      CACCGGGCCGAAGCTGCTGTCCGCGAAGCTGTCGCCCGTCGCGGCGGCCGTCGGGGACAG 480
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      GATCTACGTCCTCTCGAGCCGCCCCCAATACTTCGAGCCGTGGTTCGAGGTGCTCGACCT 540
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      GTCCCGGGCCACGGTGGTGGCAACGGCGGACGGCCGCCACACGCTCGATGGGTGCTCGTG 600
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      GGAGGCCTTGCCGGATCCCATATGCTTCCCTTGTGTGCTCTCCCCGGCTGGGTACCTCGC 660
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      CCCGCCCCTCATCCTCGTCACCTCCTACGTGCTATTTCTCCCCTATCTGCTCGTGTCCGT 720
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      GAATAATATGGGCAAGATGACAACCTATGCATTTGACACCGGCACTCACCGGTGGCACAA 780
consensus_1844#1      ------------------------------------------------------------
                                                                                  

consensus_1844#0      GCTGTACGACTACGGCCTGCCGTTCTTCGGCTCCGCGAC-GCCAC-TAGTAGGCATCCGT 838
consensus_1844#1      ---------------------------------CGTGACCGCCACCTAGGTAGCATCCGT 27
                                                       ** *** ***** ***   ********

consensus_1844#0      CTAGTCTCATCCG-CTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGA 897
consensus_1844#1      CTAGTCTCATCCGGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGA 87
                      ************* **********************************************

consensus_1844#0      GGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGG 957
consensus_1844#1      GGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGG 147
                      ************************************************************

consensus_1844#0      GAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACACC-ACATGTCTTATGATA 1016
consensus_1844#1      GAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACANCCACATGTCTTATGATA 207
                      ****************************************** * ***************

consensus_1844#0      AAGATATACACGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAG 1076
consensus_1844#1      AAGATATACCCGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAG 267
                      ********* **************************************************

consensus_1844#0      TGGAGGGGGAGAAGACTGATATGGACA-TTGTAGTCCGCTGCAAACGGGACAAGGCCTTG 1135
consensus_1844#1      TGGAGGGGGAGAAGACTGATATGGACACTTGTAGTCCGCTGCAAACGGGACAAG-CCTTG 326
                      *************************** ************************** *****

consensus_1844#0      AAGATTTTCAGTTCCCATGGGTTCTCCTCTCCACCCATCGCCTTTGCTTTATCCATATAA 1195
consensus_1844#1      AAGATTTTCAGTTCCCATGGGTTCTC-------------GCCTTTGCTTTATCAATATAA 373
                      **************************             ************** ******

consensus_1844#0      GCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTGCAAATGTAT 1255
consensus_1844#1      GCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGT-CAAATGTAT 432
                      ************************************************** *********

consensus_1844#0      ATATGTGCCATGTGCCAATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCC 1315
consensus_1844#1      ATAC---CCATGTCC--ATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCC 487
                      ***    ****** *  *******************************************

consensus_1844#0      TTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCT--------------- 1360
consensus_1844#1      TTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCTGTTTGCCAAAAAAAA 547
                      *********************************************