cluster # 1858

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Oryza sativa
cluster # 1858 cluster # 1858 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1858#0 length = 372 sequences # 1

consensus_1858#1 length = 367 sequences # 1

consensusID : consensus_1858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [CCGGTGACAAATAAGTTCATACAAGATCTGTCCATTTTTCTTGTTGAAAATAGGAGAAAGGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTTCAGTCAAAGTATGTGCCCACTGGAGGCATTGATGTTATCTGTTGACCAAATTCAAGTTCATTTCTCTATCACACCGAAAGGACAGAAAAGAAGTTGCTCCACGCTGGGAGTTCTGCTGTCTTAAATGGTCTGTTACNAATCTTCAACAAAATTCTCTGCTTGAAATTGGATCACCAAATAGCATCTCTGTTTTGAAAAATTGCACTAGATGCNCAGTAGGAGTTAGAAGTCCCATCCTCAGTAAAAAAAAAA]

[+] EMBL BM420958             [CCGGTGACAAATAAGTTCATACAAGATCTGTCCATTTTTCTTGTTGAAAATAGGAGAAAGGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTTCAGTCAAAGTATGTGCCCACTGGAGGCATTGATGTTATCTGTTGACCAAATTCAAGTTCATTTCTCTATCACACCGAAAGGACAGAAAAGAAGTTGCTCCACGCTGGGAGTTCTGCTGTCTTAAATGGTCTGTTACNAATCTTCAACAAAATTCTCTGCTTGAAATTGGATCACCAAATAGCATCTCTGTTTTGAAAAATTGCACTAGATGCNCAGTAGGAGTTAGAAGTCCCATCCTCAGTAAAAAAAAAA]




>consensus_1858#0
CCGGTGACAAATAAGTTCATACAAGATCTGTCCATTTTTCTTGTTGAAAATAGGAGAAAG
GACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTT
CAGTCAAAGTATGTGCCCACTGGAGGCATTGATGTTATCTGTTGACCAAATTCAAGTTCA
TTTCTCTATCACACCGAAAGGACAGAAAAGAAGTTGCTCCACGCTGGGAGTTCTGCTGTC
TTAAATGGTCTGTTACNAATCTTCAACAAAATTCTCTGCTTGAAATTGGATCACCAAATA
GCATCTCTGTTTTGAAAAATTGCACTAGATGCNCAGTAGGAGTTAGAAGTCCCATCCTCA
GTAAAAAAAAAA

consensusID : consensus_1858#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [CCGGTGACCAAATAAGTTCATACCAGATCTGTCCCTTTTTCTTGTTGAAAATAGGAGAAAGGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTTCAGTCCAAGTATGTCCCCTGGAGGCATTATTTATCTTTGACCAAATTCAAGTTCATTTCTCTATCAACCGAAAGGACCAGAAAAGAAGTTGCTCCNGCTGGGAGTTCTCTGTTTAAATGGTCTTTACCAATCTTCAACCAAATTCTCTGCTTAAATTTATCAACCAAATACCCATCTCTGTTTTGAAAAAGTTGCCNCTAGATGCCACCACGGTTAAGGGAGTTAGAAGTCCCCTCCCCAGGTTAA]

[+] EMBL BM038106             [CCGGTGACCAAATAAGTTCATACCAGATCTGTCCCTTTTTCTTGTTGAAAATAGGAGAAAGGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTTTCAGTCCAAGTATGTCCCCTGGAGGCATTATTTATCTTTGACCAAATTCAAGTTCATTTCTCTATCAACCGAAAGGACCAGAAAAGAAGTTGCTCCNGCTGGGAGTTCTCTGTTTAAATGGTCTTTACCAATCTTCAACCAAATTCTCTGCTTAAATTTATCAACCAAATACCCATCTCTGTTTTGAAAAAGTTGCCNCTAGATGCCACCACGGTTAAGGGAGTTAGAAGTCCCCTCCCCAGGTTAA]




>consensus_1858#1
CCGGTGACCAAATAAGTTCATACCAGATCTGTCCCTTTTTCTTGTTGAAAATAGGAGAAA
GGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTT
TCAGTCCAAGTATGTCCCCTGGAGGCATTATTTATCTTTGACCAAATTCAAGTTCATTTC
TCTATCAACCGAAAGGACCAGAAAAGAAGTTGCTCCNGCTGGGAGTTCTCTGTTTAAATG
GTCTTTACCAATCTTCAACCAAATTCTCTGCTTAAATTTATCAACCAAATACCCATCTCT
GTTTTGAAAAAGTTGCCNCTAGATGCCACCACGGTTAAGGGAGTTAGAAGTCCCCTCCCC
AGGTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1858#0      CCGGTGAC-AAATAAGTTCATACAAGATCTGTCCATTTTTCTTGTTGAAAATAGGAGAAA 59
consensus_1858#1      CCGGTGACCAAATAAGTTCATACCAGATCTGTCCCTTTTTCTTGTTGAAAATAGGAGAAA 60
                      ******** ************** ********** *************************

consensus_1858#0      GGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTT 119
consensus_1858#1      GGACGTACCATGTCTCGTTCATTTCTGCGGAATTTGGCGTGTTCGTTTTCCCATAGTTTT 120
                      ************************************************************

consensus_1858#0      TCAGTCAAAGTATGTGCCCACTGGAGGCATTGATGTTATCTGTTGACCAAATTCAAGTTC 179
consensus_1858#1      TCAGTCCAAGTATGT--CCCCTGGAGGCATTATT--TATCT-TTGACCAAATTCAAGTTC 175
                      ****** ********  ** ***********  *  ***** ******************

consensus_1858#0      ATTTCTCTATCACACCGAAAGGAC-AGAAAAGAAGTTGCTCCACGCTGGGAGTTCTGCTG 238
consensus_1858#1      ATTTCTCTATCA-ACCGAAAGGACCAGAAAAGAAGTTGCTCCN-GCTGGGAGTTCT-CTG 232
                      ************ *********** *****************  ************ ***

consensus_1858#0      TCTTAAATGGTCTGTTACNAATCTTCAACAAAATTCTCTGCTTGAAATTGGATCACCAAA 298
consensus_1858#1      T-TTAAATGGTCT-TTACCAATCTTCAACCAAATTCTCTGCTT-AAATTTATCAACCAAA 289
                      * *********** **** ********** ************* *****     ******

consensus_1858#0      TAGC-ATCTCTGTTTTGAAAAA-TTGC-ACTAGATGCN----CAGT---AGGAGTTAGAA 348
consensus_1858#1      TACCCATCTCTGTTTTGAAAAAGTTGCCNCTAGATGCCACCACGGTTAAGGGAGTTAGAA 349
                      ** * ***************** ****  ********     * **    **********

consensus_1858#0      GTCCCATCCTCAGTAAAAAAAAAA 372
consensus_1858#1      GTCCCCTCCCCAGGTTAA------ 367
                      ***** *** ***   **