|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence
[GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACTGATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAACGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACCAGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCCCAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGACACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATTGCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCTCCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATNTTTATTATTTTATGTTTGGATCGAACTTTGGTGGGGACTGGATGCGGAGAGTTTACNTCTTGACTTTAGGTCACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCTATTTTGAGAATGAGCTCAACCACGTTTTTCCCGGCTATTCTGAGAATGAGCTTCAACCCAAAATGCACTGATTAGTAAATGGTAAAAAAAANAANNNANNNNNNNNNNTNNNNNNNNNNGANANNNCCTCGGGGGGGGGCCGGGCCCAGTCCCC]
[+] EMBL BE040452 [GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACTGATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAACGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACCAGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCCCAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGACACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATTGCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCTCCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATNTTTATTATTTTATGTTTGGATCGAACTTTGGTGGGGACTGGATGCGGAGAGTTTACNTCTTGACTTTAGGTCACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCTATTTTGAGAATGAGCTCAACCACGTTTTTCCCGGCTATTCTGAGAATGAGCTTCAACCCAAAATGCACTGATTAGTAAATGGTAAAAAAAANAANNNANNNNNNNNNNTNNNNNNNNNNGANANNNCCTCGGGGGGGGGCCGGGCCCAGTCCCC]
consensusID : consensus_1865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACTGATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAACGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACCAGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCCCAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGACACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATTGCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCTCCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATTTTTATTATTTTATGTTTGTATCGAACTTTGGTGTGGACTGCATGCGGTAAGTTTTCGTCTTGACTTTAGGTCACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCCTATTCTGAGAATGAGCTCGAACCACGTTTTCCCCGCCAAAAAAAA]
[+] EMBL CA757327 [GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACTGATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAACGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACCAGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCCCAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGACACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATTGCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCTCCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATTTTTATTATTTTATGTTTGTATCGAACTTTGGTGTGGACTGCATGCGGTAAGTTTTCGTCTTGACTTTAGGTCACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCCTATTCTGAGAATGAGCTCGAACCACGTTTTCCCCGCCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1865#0 GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACT 60
consensus_1865#1 GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACT 60
************************************************************
consensus_1865#0 GATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAA 120
consensus_1865#1 GATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAA 120
************************************************************
consensus_1865#0 CGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACC 180
consensus_1865#1 CGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACC 180
************************************************************
consensus_1865#0 AGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATG 240
consensus_1865#1 AGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATG 240
************************************************************
consensus_1865#0 CCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCC 300
consensus_1865#1 CCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCC 300
************************************************************
consensus_1865#0 CAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGAC 360
consensus_1865#1 CAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGAC 360
************************************************************
consensus_1865#0 ACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATT 420
consensus_1865#1 ACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATT 420
************************************************************
consensus_1865#0 GCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCT 480
consensus_1865#1 GCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCT 480
************************************************************
consensus_1865#0 CCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATNTTTATTATTTTA 540
consensus_1865#1 CCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATTTTTATTATTTTA 540
*********************************************** ************
consensus_1865#0 TGTTTGGATCGAACTTTGGTGGGGACTGGATGCGGAGAGTTTACNTCTTGACTTTAGGTC 600
consensus_1865#1 TGTTTGTATCGAACTTTGGTGTGGACTGCATGCGGTAAGTTTTCGTCTTGACTTTAGGTC 600
****** ************** ****** ****** ***** * ***************
consensus_1865#0 ACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGC-TATTTTGAGAATGAGC 659
consensus_1865#1 ACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCCTATTCTGAGAATGAGC 660
******************************************* **** ***********
consensus_1865#0 TC-AACCACGTTTTTCCCGGCTATTCTGAGAATGAGCTTCAACCCAAAATGCACTGATTA 718
consensus_1865#1 TCGAACCACGTTTTCCCCGCCAAAAAAAA------------------------------- 689
** *********** **** * * *
consensus_1865#0 GTAAATGGTAAAAAAAANAANNNANNNNNNNNNNTNNNNNNNNNNGANANNNCCTCGGGG 778
consensus_1865#1 ------------------------------------------------------------
consensus_1865#0 GGGGGCCGGGCCCAGTCCCC 798
consensus_1865#1 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||