These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence [ATACACGAAGCTTCTCATCATGGAGGAGATGAAGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGCCGCGCACGGCGTACGGTTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGAATCGGCCAGCCGCCATTAACCCGCTCTTCTCCGGCGAATGATGATTGCGCGCGCAGGAGGAGGTGGAGATGGATGGGAGGGTGGCGCACCGGAAGGGGAAGCTGACGGCCGCCGTGGTGGAGGTGCGGAGGAAGGCGTCCGGCGAGCTGGTGGCGATAGGGAGGCAGTGGATGACCTCTACTCGGGCGAGGCCGGAGAAGAATGGCGAGAGCAGGAGCAAACTCTGAAACGAAAATTTCCTCTAAAAATCGCTTTCTCTTCTTTTCTGATTTCATCATCTCAACACCTAAAGAAAACTGTTGTAAATTCTCAAGATAGTGATAATGGCGTCCATTCGAAAGTGCCAGTAACAGTAAGTAAACTGTTGTAAATTCTCAAGATGGTATAAAAGCTCTTTTCTTC] [+] EMBL AK107876 [ATACACGAAGCTTCTCATCATGGAGGAGATGAAGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGCCGCGCACGGCGTACGGTTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGAATCGGCCAGCCGCCATTAACCCGCTCTTCTCCGGCGAATGATGATTGCGCGCGCAGGAGGAGGTGGAGATGGATGGGAGGGTGGCGCACCGGAAGGGGAAGCTGACGGCCGCCGTGGTGGAGGTGCGGAGGAAGGCGTCCGGCGAGCTGGTGGCGATAGGGAGGCAGTGGATGACCTCTACTCGGGCGAGGCCGGAGAAGAATGGCGAGAGCAGGAGCAAACTCTGAAACGAAAATTTCCTCTAAAAATCGCTTTCTCTTCTTTTCTGATTTCATCATCTCAACACCTAAAGAAAACTGTTGTAAATTCTCAAGATAGTGATAATGGCGTCCATTCGAAAGTGCCAGTAACAGTAAGTAAACTGTTGTAAATTCTCAAGATGGTATAAAAGCTCTTTTCTTC] consensusID : consensus_1873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [AGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGTGGTGATGCCCGGGTTCCGCGTCTCCCTCGCCGAGCCCGGCCGCCTCGTCTGCTCCTTCTGCGTCCCCGCCGCCGTCGCCGTACGTGCGTCCTCCTTCCTTTCCCGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGNCGCGCACGGCGTACGGNTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGA] [+] EMBL CA756303 [AGAAGAGCTTTGCTCGGAGAGTGAGCCAGTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGCGGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGACTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGTGGTGATGCCCGGGTTCCGCGTCTCCCTCGCCGAGCCCGGCCGCCTCGTCTGCTCCTTCTGCGTCCCCGCCGCCGTCGCCGTACGTGCGTCCTCCTTCCTTTCCCGGCGGCCATGTCGGTCGCCACGCCGTGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCGGTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCGGTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATCAGCCAGGCCATGTCCTTCTTCTCCCCGGNCGCGCACGGCGTACGGNTCCTCCATGGATCATCATCTTCATCTTGCTCTCTTCTCCTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1873#0 ATACACGAAGCTTCTCATCATGGAGGAGATGAAGAAGAGCTTTGCTCGGAGAGTGAGCCA 60 consensus_1873#1 --------------------------------AGAAGAGCTTTGCTCGGAGAGTGAGCCA 28 **************************** consensus_1873#0 GTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGC 120 consensus_1873#1 GTGAGGCAGTCAAGCTAGCATTAGCAAGGGCGGCGACATGGACGGCGAGTCGCCGGCGGC 88 ************************************************************ consensus_1873#0 GGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGA 180 consensus_1873#1 GGCGGCGGCGGCGCTGCGGCTGGCCGCCGTGGCGAGGAGGTGGCTGGAGAACCCCCGGGA 148 ************************************************************ consensus_1873#0 CTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGG---------- 230 consensus_1873#1 CTCGCTGGCGAGGAGCAGAGAGGAAGGCTGCGGCGACGCGTTCAACACGGTGGTGATGCC 208 ************************************************** consensus_1873#0 ------------------------------------------------------------ consensus_1873#1 CGGGTTCCGCGTCTCCCTCGCCGAGCCCGGCCGCCTCGTCTGCTCCTTCTGCGTCCCCGC 268 consensus_1873#0 -------------------------------------CGGCCATGTCGGTCGCCACGCCG 253 consensus_1873#1 CGCCGTCGCCGTACGTGCGTCCTCCTTCCTTTCCCGGCGGCCATGTCGGTCGCCACGCCG 328 *********************** consensus_1873#0 TGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCG 313 consensus_1873#1 TGTTCGTTCGCACTCCGATTCGGTCTCACCTGCTTGTTCTTGGTTTCTGCTGCTGCGGCG 388 ************************************************************ consensus_1873#0 GTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCG 373 consensus_1873#1 GTGGCGGCGGCGGCGCAGGACGCGGACGGGAGGTGGCACGCCGGGGCGATGGCGGCGGCG 448 ************************************************************ consensus_1873#0 GTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATC 433 consensus_1873#1 GTGGACAACCTGTGCGCGGCGGTGGTGTACACGGCGGACGGCGTGCACAGGTTCACCATC 508 ************************************************************ consensus_1873#0 AGCCAGGCCATGTCCTTCTTCTCCCCGGCCGCGCACGGCGTACGGTTCCTCCATGGATCA 493 consensus_1873#1 AGCCAGGCCATGTCCTTCTTCTCCCCGGNCGCGCACGGCGTACGGNTCCTCCATGGATCA 568 **************************** **************** ************** consensus_1873#0 TCATCTTCATCTTGCTCTCTTCTCCTGTGAATCGGCCAGCCGCCATTAACCCGCTCTTCT 553 consensus_1873#1 TCATCTTCATCTTGCTCTCTTCTCCTGTGA------------------------------ 598 ****************************** consensus_1873#0 CCGGCGAATGATGATTGCGCGCGCAGGAGGAGGTGGAGATGGATGGGAGGGTGGCGCACC 613 consensus_1873#1 ------------------------------------------------------------ consensus_1873#0 GGAAGGGGAAGCTGACGGCCGCCGTGGTGGAGGTGCGGAGGAAGGCGTCCGGCGAGCTGG 673 consensus_1873#1 ------------------------------------------------------------ consensus_1873#0 TGGCGATAGGGAGGCAGTGGATGACCTCTACTCGGGCGAGGCCGGAGAAGAATGGCGAGA 733 consensus_1873#1 ------------------------------------------------------------ consensus_1873#0 GCAGGAGCAAACTCTGAAACGAAAATTTCCTCTAAAAATCGCTTTCTCTTCTTTTCTGAT 793 consensus_1873#1 ------------------------------------------------------------ consensus_1873#0 TTCATCATCTCAACACCTAAAGAAAACTGTTGTAAATTCTCAAGATAGTGATAATGGCGT 853 consensus_1873#1 ------------------------------------------------------------ consensus_1873#0 CCATTCGAAAGTGCCAGTAACAGTAAGTAAACTGTTGTAAATTCTCAAGATGGTATAAAA 913 consensus_1873#1 ------------------------------------------------------------ consensus_1873#0 GCTCTTTTCTTC 925 consensus_1873#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||