cluster # 1881

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Oryza sativa
cluster # 1881 cluster # 1881 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1881#0 length = 1463 sequences # 1

consensus_1881#1 length = 456 sequences # 1

consensusID : consensus_1881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1463
fasta sequence

                              [TTGATTATTACTATGTTCAATTCGACGGAATCTTAGAGGAGGAAAATCCAAATGAATGGATGATTGATCTAATCGCAGCTGATATACCACCTATGAGGCACACGGATGATCCTGGCGCAATATATGCCAAGTGCTATGACGCGGTGCGGGTGTACTCGGTCGAGGTGAAGCAAATCAAGTGTGGGTTGCGGTGGCCTATCGAGGTGTTTGGCCATGTCGCCGTGCGAGACAGCGTCGATCGCAAGCGCAACCTCGTCTTCAATCGTGGCCGGGACGATTGCCAAACGCTCACGGCGGAGGTGATCGATCGACCTTACCTCAAATCAGCTACCTGAAAATTTGCTCGCACACGCACATTATTATTGCAACATCCAGTGCTAACGTTGCCTTAATCAGCTCTAGCTAAACATTGCTCACCCTTGCACAACACTATTTTTCTCCCAAGTTTTTCCTGCTAACGATGTCATCTTGTTATTTGCGTGGTACTTACTAGTTCTTCTGCTGTTATGGTTGTACTAGCTTGAGCAATATAGATATGCAGTACATACTACCACATCAGTATTCAGATAGCATTGCTTTTGTTTCTTAGCATATGCGTGTTAAATACTCTACAGATAAATTGATGTCATCTATTAAAAAACGGAGGTAGTACAACTTAAAGTAGCTACACTATGGTTCCCCTTGTTTTACTGTGTTTCATATTTGAAAACAAATTTGTCTTGGATCGAAATATATGTGTATAACACATATGGCTGTAATCAATATTTGCAGGACTCCTCTTTGGTGTTAACAGGGCCTAGTCGATATGTCTTGGCAATGGACAATCCGGACTTTGAAGTTGAGCTAAAGGTCAAGGGAATTGCGGAGACTGAAGACAAGGTTTTGAGCTCTCATGCCTTTACATTCAACTGCATCTATGACGATGGTAGTAGTGTTAAGAGGCGCGTGGCTTCCAACAAGCGCAGCACGGTGCAGATCACGTTTGCTTTAATTCCAGAGACAGTGGAGGCGACATTTGAGGTTAAAGTCGTTGATGGGTCATTGGATCCTTCCCTACGCCCACATTTCTTTGCTTCTACTCACCACCATCCCAGCACGGAATGTGTGTTGCTTGATCCTCGAGAGGGTGCAACGGTGATCAGCGACAATAATAGTGTCAAACTTACTCGATCTGTTGTTTCCGTTGAAGTGCTGGGGGGATTGAAGCTTACTGCAGAGGCTCTAGATGATGAAAAAGCTGTTGTTCCTAGGACAACAATTATCTTCGAACCACAAAGGGATGGTAGAGTGTATGGATTTCTTGATCTTAATTGTTGTAAGATGGTGGTTAAAGTTTCCTGGTCTCGACTTTCCATTTGTTGACTGAACATTATTTTGTAGCCGGTGCTATGTTGATATGTAGGAACTTGTGCTATCCTTTTTTATGATTAATGTTAGCTATGTACTGATGTATATGATCTTTT]

[+] EMBL AK064409             [TTGATTATTACTATGTTCAATTCGACGGAATCTTAGAGGAGGAAAATCCAAATGAATGGATGATTGATCTAATCGCAGCTGATATACCACCTATGAGGCACACGGATGATCCTGGCGCAATATATGCCAAGTGCTATGACGCGGTGCGGGTGTACTCGGTCGAGGTGAAGCAAATCAAGTGTGGGTTGCGGTGGCCTATCGAGGTGTTTGGCCATGTCGCCGTGCGAGACAGCGTCGATCGCAAGCGCAACCTCGTCTTCAATCGTGGCCGGGACGATTGCCAAACGCTCACGGCGGAGGTGATCGATCGACCTTACCTCAAATCAGCTACCTGAAAATTTGCTCGCACACGCACATTATTATTGCAACATCCAGTGCTAACGTTGCCTTAATCAGCTCTAGCTAAACATTGCTCACCCTTGCACAACACTATTTTTCTCCCAAGTTTTTCCTGCTAACGATGTCATCTTGTTATTTGCGTGGTACTTACTAGTTCTTCTGCTGTTATGGTTGTACTAGCTTGAGCAATATAGATATGCAGTACATACTACCACATCAGTATTCAGATAGCATTGCTTTTGTTTCTTAGCATATGCGTGTTAAATACTCTACAGATAAATTGATGTCATCTATTAAAAAACGGAGGTAGTACAACTTAAAGTAGCTACACTATGGTTCCCCTTGTTTTACTGTGTTTCATATTTGAAAACAAATTTGTCTTGGATCGAAATATATGTGTATAACACATATGGCTGTAATCAATATTTGCAGGACTCCTCTTTGGTGTTAACAGGGCCTAGTCGATATGTCTTGGCAATGGACAATCCGGACTTTGAAGTTGAGCTAAAGGTCAAGGGAATTGCGGAGACTGAAGACAAGGTTTTGAGCTCTCATGCCTTTACATTCAACTGCATCTATGACGATGGTAGTAGTGTTAAGAGGCGCGTGGCTTCCAACAAGCGCAGCACGGTGCAGATCACGTTTGCTTTAATTCCAGAGACAGTGGAGGCGACATTTGAGGTTAAAGTCGTTGATGGGTCATTGGATCCTTCCCTACGCCCACATTTCTTTGCTTCTACTCACCACCATCCCAGCACGGAATGTGTGTTGCTTGATCCTCGAGAGGGTGCAACGGTGATCAGCGACAATAATAGTGTCAAACTTACTCGATCTGTTGTTTCCGTTGAAGTGCTGGGGGGATTGAAGCTTACTGCAGAGGCTCTAGATGATGAAAAAGCTGTTGTTCCTAGGACAACAATTATCTTCGAACCACAAAGGGATGGTAGAGTGTATGGATTTCTTGATCTTAATTGTTGTAAGATGGTGGTTAAAGTTTCCTGGTCTCGACTTTCCATTTGTTGACTGAACATTATTTTGTAGCCGGTGCTATGTTGATATGTAGGAACTTGTGCTATCCTTTTTTATGATTAATGTTAGCTATGTACTGATGTATATGATCTTTT]




>consensus_1881#0
TTGATTATTACTATGTTCAATTCGACGGAATCTTAGAGGAGGAAAATCCAAATGAATGGA
TGATTGATCTAATCGCAGCTGATATACCACCTATGAGGCACACGGATGATCCTGGCGCAA
TATATGCCAAGTGCTATGACGCGGTGCGGGTGTACTCGGTCGAGGTGAAGCAAATCAAGT
GTGGGTTGCGGTGGCCTATCGAGGTGTTTGGCCATGTCGCCGTGCGAGACAGCGTCGATC
GCAAGCGCAACCTCGTCTTCAATCGTGGCCGGGACGATTGCCAAACGCTCACGGCGGAGG
TGATCGATCGACCTTACCTCAAATCAGCTACCTGAAAATTTGCTCGCACACGCACATTAT
TATTGCAACATCCAGTGCTAACGTTGCCTTAATCAGCTCTAGCTAAACATTGCTCACCCT
TGCACAACACTATTTTTCTCCCAAGTTTTTCCTGCTAACGATGTCATCTTGTTATTTGCG
TGGTACTTACTAGTTCTTCTGCTGTTATGGTTGTACTAGCTTGAGCAATATAGATATGCA
GTACATACTACCACATCAGTATTCAGATAGCATTGCTTTTGTTTCTTAGCATATGCGTGT
TAAATACTCTACAGATAAATTGATGTCATCTATTAAAAAACGGAGGTAGTACAACTTAAA
GTAGCTACACTATGGTTCCCCTTGTTTTACTGTGTTTCATATTTGAAAACAAATTTGTCT
TGGATCGAAATATATGTGTATAACACATATGGCTGTAATCAATATTTGCAGGACTCCTCT
TTGGTGTTAACAGGGCCTAGTCGATATGTCTTGGCAATGGACAATCCGGACTTTGAAGTT
GAGCTAAAGGTCAAGGGAATTGCGGAGACTGAAGACAAGGTTTTGAGCTCTCATGCCTTT
ACATTCAACTGCATCTATGACGATGGTAGTAGTGTTAAGAGGCGCGTGGCTTCCAACAAG
CGCAGCACGGTGCAGATCACGTTTGCTTTAATTCCAGAGACAGTGGAGGCGACATTTGAG
GTTAAAGTCGTTGATGGGTCATTGGATCCTTCCCTACGCCCACATTTCTTTGCTTCTACT
CACCACCATCCCAGCACGGAATGTGTGTTGCTTGATCCTCGAGAGGGTGCAACGGTGATC
AGCGACAATAATAGTGTCAAACTTACTCGATCTGTTGTTTCCGTTGAAGTGCTGGGGGGA
TTGAAGCTTACTGCAGAGGCTCTAGATGATGAAAAAGCTGTTGTTCCTAGGACAACAATT
ATCTTCGAACCACAAAGGGATGGTAGAGTGTATGGATTTCTTGATCTTAATTGTTGTAAG
ATGGTGGTTAAAGTTTCCTGGTCTCGACTTTCCATTTGTTGACTGAACATTATTTTGTAG
CCGGTGCTATGTTGATATGTAGGAACTTGTGCTATCCTTTTTTATGATTAATGTTAGCTA
TGTACTGATGTATATGATCTTTT

consensusID : consensus_1881#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [GGGGTGTTTANAACCAAAATATTGTTTNAATTATCACCTCCCCCCCCGAAAGGGGTGCTTGATCNTCGGGAGGTCCAATGGTGGTAAGTGGGGATGGCAGCGTCAAACTTACTCGGTCTGTTGTTTCCGTTGAATTGCTGGGGGGATTGAAGCTGACTGCAGAGGCTTTGGGTGATGAAAAAACTGTTGTTGATAGCGGCACGGTCATCTTCAAACCACAAAGAGCTGGTAGAGCGGATGGATTTCTTAATCTTAAAGGTTGTAAGATGGCTGTTAGAATTGCTTGGTCTCGTCTTTCCTTTTTTTGAGTGTACACTCAGAAGCCTATGCTATCTACGGAATGTAGAATCTCATGCTATCCTTTTGTCATGGTTTATGTTAGCTACTCCTTTAACTAGTGTATGTGCAATATTTCTTTGTTTATGTAATTTATCTACTATTGTTACTAAAAAAAAA]

[+] EMBL AA753989             [GGGGTGTTTANAACCAAAATATTGTTTNAATTATCACCTCCCCCCCCGAAAGGGGTGCTTGATCNTCGGGAGGTCCAATGGTGGTAAGTGGGGATGGCAGCGTCAAACTTACTCGGTCTGTTGTTTCCGTTGAATTGCTGGGGGGATTGAAGCTGACTGCAGAGGCTTTGGGTGATGAAAAAACTGTTGTTGATAGCGGCACGGTCATCTTCAAACCACAAAGAGCTGGTAGAGCGGATGGATTTCTTAATCTTAAAGGTTGTAAGATGGCTGTTAGAATTGCTTGGTCTCGTCTTTCCTTTTTTTGAGTGTACACTCAGAAGCCTATGCTATCTACGGAATGTAGAATCTCATGCTATCCTTTTGTCATGGTTTATGTTAGCTACTCCTTTAACTAGTGTATGTGCAATATTTCTTTGTTTATGTAATTTATCTACTATTGTTACTAAAAAAAAA]




>consensus_1881#1
GGGGTGTTTANAACCAAAATATTGTTTNAATTATCACCTCCCCCCCCGAAAGGGGTGCTT
GATCNTCGGGAGGTCCAATGGTGGTAAGTGGGGATGGCAGCGTCAAACTTACTCGGTCTG
TTGTTTCCGTTGAATTGCTGGGGGGATTGAAGCTGACTGCAGAGGCTTTGGGTGATGAAA
AAACTGTTGTTGATAGCGGCACGGTCATCTTCAAACCACAAAGAGCTGGTAGAGCGGATG
GATTTCTTAATCTTAAAGGTTGTAAGATGGCTGTTAGAATTGCTTGGTCTCGTCTTTCCT
TTTTTTGAGTGTACACTCAGAAGCCTATGCTATCTACGGAATGTAGAATCTCATGCTATC
CTTTTGTCATGGTTTATGTTAGCTACTCCTTTAACTAGTGTATGTGCAATATTTCTTTGT
TTATGTAATTTATCTACTATTGTTACTAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1881#0      TTGATTATTACTATGTTCAATTCGACGGAATCTTAGAGGAGGAAAATCCAAATGAATGGA 60
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TGATTGATCTAATCGCAGCTGATATACCACCTATGAGGCACACGGATGATCCTGGCGCAA 120
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TATATGCCAAGTGCTATGACGCGGTGCGGGTGTACTCGGTCGAGGTGAAGCAAATCAAGT 180
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      GTGGGTTGCGGTGGCCTATCGAGGTGTTTGGCCATGTCGCCGTGCGAGACAGCGTCGATC 240
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      GCAAGCGCAACCTCGTCTTCAATCGTGGCCGGGACGATTGCCAAACGCTCACGGCGGAGG 300
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TGATCGATCGACCTTACCTCAAATCAGCTACCTGAAAATTTGCTCGCACACGCACATTAT 360
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TATTGCAACATCCAGTGCTAACGTTGCCTTAATCAGCTCTAGCTAAACATTGCTCACCCT 420
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TGCACAACACTATTTTTCTCCCAAGTTTTTCCTGCTAACGATGTCATCTTGTTATTTGCG 480
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TGGTACTTACTAGTTCTTCTGCTGTTATGGTTGTACTAGCTTGAGCAATATAGATATGCA 540
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      GTACATACTACCACATCAGTATTCAGATAGCATTGCTTTTGTTTCTTAGCATATGCGTGT 600
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TAAATACTCTACAGATAAATTGATGTCATCTATTAAAAAACGGAGGTAGTACAACTTAAA 660
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      GTAGCTACACTATGGTTCCCCTTGTTTTACTGTGTTTCATATTTGAAAACAAATTTGTCT 720
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TGGATCGAAATATATGTGTATAACACATATGGCTGTAATCAATATTTGCAGGACTCCTCT 780
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      TTGGTGTTAACAGGGCCTAGTCGATATGTCTTGGCAATGGACAATCCGGACTTTGAAGTT 840
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      GAGCTAAAGGTCAAGGGAATTGCGGAGACTGAAGACAAGGTTTTGAGCTCTCATGCCTTT 900
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      ACATTCAACTGCATCTATGACGATGGTAGTAGTGTTAAGAGGCGCGTGGCTTCCAACAAG 960
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      CGCAGCACGGTGCAGATCACGTTTGCTTTAATTCCAGAGACAGTGGAGGCGACATTTGAG 1020
consensus_1881#1      ------------------------------------------------------------
                                                                                  

consensus_1881#0      GTTAAAGTCGTTGATGGGTCATTGGATCCTTCCCTACGCCCACATTTCTTTGCTTCTACT 1080
consensus_1881#1      -----------------------GGGGTGTT---TANAACCAAAATATTGT---TTNAAT 31
                                             **    **   **   *** * *  * *   *  * *

consensus_1881#0      CACCACCATCCCAGCACGGAATGTGTGTTGCTTGATCCTCGAGAGGGTGCAACGGTGATC 1140
consensus_1881#1      TATCACC-TCCCCCCCCGAAAGGGG---TGCTTGATCNTCGGGAGG-TCCAATGGTGGTA 86
                       * **** ****  * ** ** * *   ********* *** **** * *** **** * 

consensus_1881#0      AGCGACAATAATAGTGTCAAACTTACTCGATCTGTTGTTTCCGTTGAAGTGCTGGGGGGA 1200
consensus_1881#1      AGTGGGGATGGCAGCGTCAAACTTACTCGGTCTGTTGTTTCCGTTGAATTGCTGGGGGGA 146
                      ** *   **   ** ************** ****************** ***********

consensus_1881#0      TTGAAGCTTACTGCAGAGGCTCTAGATGATGAAAAAGCTGTTGTTCCTAGGACAACAATT 1260
consensus_1881#1      TTGAAGCTGACTGCAGAGGCTTTGGGTGATGAAAAAACTGTTGTTGATAGCGGCACGGTC 206
                      ******** ************ * * ********** ********  ***    **  * 

consensus_1881#0      ATCTTCGAACCACAAAGGGATGGTAGAGTGTATGGATTTCTTGATCTTAATTGTTGTAAG 1320
consensus_1881#1      ATCTTCAAACCACAAAGAGCTGGTAGAGCGGATGGATTTCTTAATCTTAAAGGTTGTAAG 266
                      ****** ********** * ******** * *********** *******  ********

consensus_1881#0      ATGGTGGTTAAAGTTTCCTGGTCTCGACTTTCCATTTGTTGACTGAACATTATTTTGTAG 1380
consensus_1881#1      ATGGCTGTTAGAATTGCTTGGTCTCGTCTTTCCTTTTTTTGAGTGTACACT---CAGAAG 323
                      ****  **** * ** * ******** ****** *** **** ** *** *     * **

consensus_1881#0      CCGGTGCTATGT-TGATATGTAGGAACTTGTGCTATCCTTTT-TTATGATTAATGTTAGC 1438
consensus_1881#1      CCTATGCTATCTACGGAATGTAGAATCTCATGCTATCCTTTTGTCATGGTTTATGTTAGC 383
                      **  ****** *  *  ****** * **  ************ * *** ** ********

consensus_1881#0      TATGT-----ACTGATGTATATG--ATCTTTT---------------------------- 1463
consensus_1881#1      TACTCCTTTAACTAGTGTATGTGCAATATTTCTTTGTTTATGTAATTTATCTACTATTGT 443
                      **        ***  ***** **  ** ***                             

consensus_1881#0      -------------
consensus_1881#1      TACTAAAAAAAAA 456