cluster # 1882

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Oryza sativa
cluster # 1882 cluster # 1882 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1882#0 length = 634 sequences # 1

consensus_1882#1 length = 297 sequences # 1

consensusID : consensus_1882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [AGTTAGTTGCCACCTTAGCTAAGCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCGCATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCAGCGCCCGAGGTGGCGGTACGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGCGGCTTGCAGGGTGAGGCGGCAGATGCGCATGACGAGGAGAGTGGCGGCCGCCGGCGCCGCCGCCAGGATGGCGCGCGCCCGCGCCGTCGCCCGCACTTCTGACCGCCCCAGCCGCCGCATCCCGCCACACCCGCCCCATCCATCAACCTACTCCCCTGCCCCCCCCCGCACTCACGACAAGCTCTACCCACTGGCATCACATCCGCTTCTTCCGATCGCGTGGGTAGATCGCTCCCGCTCCACCTGTCCCCTCCGTCCGCCCTCCTCGTCCGCCGCCCCGCCCCCCCGCCGCGCCCCCTCGCTCTACTACCATCCCTCCCCTCGGGCTTAGGTGCAGCTACGTAACCACTCCACTCATCTGCTCTCCTCCACCCAGCCGCTCCCCCGCCGCCTTACTCCCACCGCTCTCCCCCTATGAGCACCACGCCCGTCGCGACCTCCACACGTCCGACCGAGCCCTCCG]

[+] EMBL CA756262             [AGTTAGTTGCCACCTTAGCTAAGCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCGCATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCAGCGCCCGAGGTGGCGGTACGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGCGGCTTGCAGGGTGAGGCGGCAGATGCGCATGACGAGGAGAGTGGCGGCCGCCGGCGCCGCCGCCAGGATGGCGCGCGCCCGCGCCGTCGCCCGCACTTCTGACCGCCCCAGCCGCCGCATCCCGCCACACCCGCCCCATCCATCAACCTACTCCCCTGCCCCCCCCCGCACTCACGACAAGCTCTACCCACTGGCATCACATCCGCTTCTTCCGATCGCGTGGGTAGATCGCTCCCGCTCCACCTGTCCCCTCCGTCCGCCCTCCTCGTCCGCCGCCCCGCCCCCCCGCCGCGCCCCCTCGCTCTACTACCATCCCTCCCCTCGGGCTTAGGTGCAGCTACGTAACCACTCCACTCATCTGCTCTCCTCCACCCAGCCGCTCCCCCGCCGCCTTACTCCCACCGCTCTCCCCCTATGAGCACCACGCCCGTCGCGACCTCCACACGTCCGACCGAGCCCTCCG]




>consensus_1882#0
AGTTAGTTGCCACCTTAGCTAAGCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCG
CATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCAGCGCCCGAGGTGGCGGTA
CGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGCGGCTTGCAG
GGTGAGGCGGCAGATGCGCATGACGAGGAGAGTGGCGGCCGCCGGCGCCGCCGCCAGGAT
GGCGCGCGCCCGCGCCGTCGCCCGCACTTCTGACCGCCCCAGCCGCCGCATCCCGCCACA
CCCGCCCCATCCATCAACCTACTCCCCTGCCCCCCCCCGCACTCACGACAAGCTCTACCC
ACTGGCATCACATCCGCTTCTTCCGATCGCGTGGGTAGATCGCTCCCGCTCCACCTGTCC
CCTCCGTCCGCCCTCCTCGTCCGCCGCCCCGCCCCCCCGCCGCGCCCCCTCGCTCTACTA
CCATCCCTCCCCTCGGGCTTAGGTGCAGCTACGTAACCACTCCACTCATCTGCTCTCCTC
CACCCAGCCGCTCCCCCGCCGCCTTACTCCCACCGCTCTCCCCCTATGAGCACCACGCCC
GTCGCGACCTCCACACGTCCGACCGAGCCCTCCG

consensusID : consensus_1882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [AGTTAGTTGCCACCTTAGCTAAGCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCGCATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCAGCGCCCGAGGTGGCGGTACGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGGGGTTTGCAGGGTGAGGCGGCACTGCGGCTGAGGAGGAGAGTNGTGGNCGCCGGCGCCGACGNNAGGATGGCGCNCGGCGGCGGCGGCGGCGTCNNNGNAAGAAGAAGNTNAGNCTGATNCTGCTAG]

[+] EMBL OS0284A              [AGTTAGTTGCCACCTTAGCTAAGCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCGCATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCAGCGCCCGAGGTGGCGGTACGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGGGGTTTGCAGGGTGAGGCGGCACTGCGGCTGAGGAGGAGAGTNGTGGNCGCCGGCGCCGACGNNAGGATGGCGCNCGGCGGCGGCGGCGGCGTCNNNGNAAGAAGAAGNTNAGNCTGATNCTGCTAG]




>consensus_1882#1
AGTTAGTTGCCACCTTAGCTAAGCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCG
CATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCAGCGCCCGAGGTGGCGGTA
CGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGGGGTTTGCAG
GGTGAGGCGGCACTGCGGCTGAGGAGGAGAGTNGTGGNCGCCGGCGCCGACGNNAGGATG
GCGCNCGGCGGCGGCGGCGGCGTCNNNGNAAGAAGAAGNTNAGNCTGATNCTGCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1882#0      AGTTAGTTGCCACCTTAGCTAAGCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCG 60
consensus_1882#1      AGTTAGTTGCCACCTTAGCTAAGCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCG 60
                      ************************************************************

consensus_1882#0      CATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCAGCGCCCGAGGTGGCGGTA 120
consensus_1882#1      CATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCAGCGCCCGAGGTGGCGGTA 120
                      ************************************************************

consensus_1882#0      CGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGCGGCTTGCAG 180
consensus_1882#1      CGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGGGGTTTGCAG 180
                      ************************************************** ** ******

consensus_1882#0      GGTGAGGCGGCAGATGCGCATGACGAGGAGAGTGGCGGCCGCCGGCGCCGCCGCCAGGAT 240
consensus_1882#1      GGTGAGGCGGCAC-TGCGGCTGAGGAGGAGAGTNGTGGNCGCCGGCGCCGACGNNAGGAT 239
                      ************  ****  *** ********* * ** *********** **  *****

consensus_1882#0      GGCGCGCGCCCGCGCCGTCGCCCGCACTTCTGACCGCCCCAGCCGCCGCATCCCGCCACA 300
consensus_1882#1      GGCGCNCGGCGGCGGCGGCGGC-GTCNNNGNAAGAAGAAGNTNAGNCTGATNCTGCTAG- 297
                      ***** ** * *** ** ** * *        *           * *  ** * ** *  

consensus_1882#0      CCCGCCCCATCCATCAACCTACTCCCCTGCCCCCCCCCGCACTCACGACAAGCTCTACCC 360
consensus_1882#1      ------------------------------------------------------------
                                                                                  

consensus_1882#0      ACTGGCATCACATCCGCTTCTTCCGATCGCGTGGGTAGATCGCTCCCGCTCCACCTGTCC 420
consensus_1882#1      ------------------------------------------------------------
                                                                                  

consensus_1882#0      CCTCCGTCCGCCCTCCTCGTCCGCCGCCCCGCCCCCCCGCCGCGCCCCCTCGCTCTACTA 480
consensus_1882#1      ------------------------------------------------------------
                                                                                  

consensus_1882#0      CCATCCCTCCCCTCGGGCTTAGGTGCAGCTACGTAACCACTCCACTCATCTGCTCTCCTC 540
consensus_1882#1      ------------------------------------------------------------
                                                                                  

consensus_1882#0      CACCCAGCCGCTCCCCCGCCGCCTTACTCCCACCGCTCTCCCCCTATGAGCACCACGCCC 600
consensus_1882#1      ------------------------------------------------------------
                                                                                  

consensus_1882#0      GTCGCGACCTCCACACGTCCGACCGAGCCCTCCG 634
consensus_1882#1      ----------------------------------