These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1397 fasta sequence [TCCTGGCTTCCCGTGAGCATCCGCGGTAGCTGCTCTGCTTCTTCTCCATGCCCATGGTCGACTTTCACTGAGAGTGGTGTGCTACAAACAGTAAACAGTTGGTGGCACACGGCCAGCCAGTGTGAGACTGAGAGAAGGAGCTGATCGAGATCTAGTACGTACGTAGCAATATGGTAGGAGGAGGTGGGTACAGGCAGAAGCTGATCCAGGTATGGAACGATTGGCAGGTGAGCGTGCTGGTGCTGCTCAGCCTCACCCTGCAACTCCTCTTCCTGAGCACGGCGGGCGCCCGGAGACGGGCGCAGCCGAGCTGGGGGAAGAAAACCTACTTCTGGGCTCTCTACATCGGCTCCAGGTTCATCACCACCTACTCCCTCGGCATCCTCTCCCGCGCCTCCACGGGCGACGCCAACGCCGACATCCAGGCGTTCTGGGCGTCCCTCCTCCTGTTCCACCTGGGAGGCCCCGACGACTTCACCGCCCTGTCCCTCGAGGACAACAAGCTCTGGGATCGCCGCTGCCTGGAGCTCTTCATCCAGGTCTCGACCACACTCTATGTCTTCTCCCGCTACGTGCTCGACCCCGGATTCCGCCGCTTCATCGTGCCGTTCGCCCTCATCTTCTCCGCCGGGGTGGTCAAGTACGTGGAGCAGGTCGTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACATGCAGGTGAAAGATTACAGCGAAGATGAGCGGGTGGCCATCAAAACCATCCGGTCAGCACACTCTCTGTTCTCGAGATTCAGTGTCCTGTTCGCGGACGGCATCTTCAGCTTCGAGGACAGGCAGGAGAGCCAGGCCATGTTCTTGCGCAAGGACGCGAGGTGGGCGTTCAAGATCGTGGAGATCGAGCTGGGTTTCGCGTACGATCGGCTCTACACCAAGGCCTCGGTGTCCCGCGGGGCGAGGCTGGCGGTGCGTGTGTGCAGCCTGTCGCTCACGCTCGCCGCCGGCCTCTGGGCGGCGCTGGCGATCCTGCGGGCGAGCCAGTACCGGCAGCGGCACCGGTGCGTGACGTACGCGCTGCTCGCCGGAGCGGCGCTCAACGACGCCGCGATACTCGCCGCCCACGCCTTCTCCGTCTGGTCCCTGGTGCACGGCGACTGGCTGAGCTGGTGCTCCGTCATGCTGGTGAAGCGGAGGAGGTGGTCGGCGAGCATGGCGCAATCCAACCTCGTCACCTTCTGCCTCCGGAAGCTGCCTTCCAACAACGACTCCGAC] [+] EMBL AK106736 [TCCTGGCTTCCCGTGAGCATCCGCGGTAGCTGCTCTGCTTCTTCTCCATGCCCATGGTCGACTTTCACTGAGAGTGGTGTGCTACAAACAGTAAACAGTTGGTGGCACACGGCCAGCCAGTGTGAGACTGAGAGAAGGAGCTGATCGAGATCTAGTACGTACGTAGCAATATGGTAGGAGGAGGTGGGTACAGGCAGAAGCTGATCCAGGTATGGAACGATTGGCAGGTGAGCGTGCTGGTGCTGCTCAGCCTCACCCTGCAACTCCTCTTCCTGAGCACGGCGGGCGCCCGGAGACGGGCGCAGCCGAGCTGGGGGAAGAAAACCTACTTCTGGGCTCTCTACATCGGCTCCAGGTTCATCACCACCTACTCCCTCGGCATCCTCTCCCGCGCCTCCACGGGCGACGCCAACGCCGACATCCAGGCGTTCTGGGCGTCCCTCCTCCTGTTCCACCTGGGAGGCCCCGACGACTTCACCGCCCTGTCCCTCGAGGACAACAAGCTCTGGGATCGCCGCTGCCTGGAGCTCTTCATCCAGGTCTCGACCACACTCTATGTCTTCTCCCGCTACGTGCTCGACCCCGGATTCCGCCGCTTCATCGTGCCGTTCGCCCTCATCTTCTCCGCCGGGGTGGTCAAGTACGTGGAGCAGGTCGTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACATGCAGGTGAAAGATTACAGCGAAGATGAGCGGGTGGCCATCAAAACCATCCGGTCAGCACACTCTCTGTTCTCGAGATTCAGTGTCCTGTTCGCGGACGGCATCTTCAGCTTCGAGGACAGGCAGGAGAGCCAGGCCATGTTCTTGCGCAAGGACGCGAGGTGGGCGTTCAAGATCGTGGAGATCGAGCTGGGTTTCGCGTACGATCGGCTCTACACCAAGGCCTCGGTGTCCCGCGGGGCGAGGCTGGCGGTGCGTGTGTGCAGCCTGTCGCTCACGCTCGCCGCCGGCCTCTGGGCGGCGCTGGCGATCCTGCGGGCGAGCCAGTACCGGCAGCGGCACCGGTGCGTGACGTACGCGCTGCTCGCCGGAGCGGCGCTCAACGACGCCGCGATACTCGCCGCCCACGCCTTCTCCGTCTGGTCCCTGGTGCACGGCGACTGGCTGAGCTGGTGCTCCGTCATGCTGGTGAAGCGGAGGAGGTGGTCGGCGAGCATGGCGCAATCCAACCTCGTCACCTTCTGCCTCCGGAAGCTGCCTTCCAACAACGACTCCGAC] consensusID : consensus_1885#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [CGAGTTGTGCGGAATTCGGCACGAGTTTTCCGCCGGGTGGTCAAGTACGTGGAGCAGGTCGTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACGTGCAGGTGAAAGATTACAGCGAAGATGAGCAGGTGGCCAGCAAAACCATCCGGTCAGCAC] [+] EMBL AA754003 [CGAGTTGTGCGGAATTCGGCACGAGTTTTCCGCCGGGTGGTCAAGTACGTGGAGCAGGTCGTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACGTGCAGGTGAAAGATTACAGCGAAGATGAGCAGGTGGCCAGCAAAACCATCCGGTCAGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1885#0 TCCTGGCTTCCCGTGAGCATCCGCGGTAGCTGCTCTGCTTCTTCTCCATGCCCATGGTCG 60 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 ACTTTCACTGAGAGTGGTGTGCTACAAACAGTAAACAGTTGGTGGCACACGGCCAGCCAG 120 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 TGTGAGACTGAGAGAAGGAGCTGATCGAGATCTAGTACGTACGTAGCAATATGGTAGGAG 180 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 GAGGTGGGTACAGGCAGAAGCTGATCCAGGTATGGAACGATTGGCAGGTGAGCGTGCTGG 240 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 TGCTGCTCAGCCTCACCCTGCAACTCCTCTTCCTGAGCACGGCGGGCGCCCGGAGACGGG 300 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 CGCAGCCGAGCTGGGGGAAGAAAACCTACTTCTGGGCTCTCTACATCGGCTCCAGGTTCA 360 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 TCACCACCTACTCCCTCGGCATCCTCTCCCGCGCCTCCACGGGCGACGCCAACGCCGACA 420 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 TCCAGGCGTTCTGGGCGTCCCTCCTCCTGTTCCACCTGGGAGGCCCCGACGACTTCACCG 480 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 CCCTGTCCCTCGAGGACAACAAGCTCTGGGATCGCCGCTGCCTGGAGCTCTTCATCCAGG 540 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 TCTCGACCACACTCTATGTCTTCTCCCGCTACGTGCTCGACCCCGGATTCCGCCGCTTCA 600 consensus_1885#1 -----------------------------------------------------CGAGTTG 7 ** * consensus_1885#0 TCGTGCCGTTCGCCCTCATCTTCTCCGCCGGGGTGGTCAAGTACGTGGAGCAGGTCGTCG 660 consensus_1885#1 T-GCGGAATTCGGCACGAG-TTTTCCGCCGGG-TGGTCAAGTACGTGGAGCAGGTCGTCG 64 * * * **** * * ** ********* *************************** consensus_1885#0 CGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTG 720 consensus_1885#1 CGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTG 124 ************************************************************ consensus_1885#0 GCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGC 780 consensus_1885#1 GCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGC 184 ************************************************************ consensus_1885#0 CGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACA 840 consensus_1885#1 CGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACG 244 *********************************************************** consensus_1885#0 TGCAGGTGAAAGATTACAGCGAAGATGAGCGGGTGGCCATCAAAACCATCCGGTCAGCAC 900 consensus_1885#1 TGCAGGTGAAAGATTACAGCGAAGATGAGCAGGTGGCCAGCAAAACCATCCGGTCAGCAC 304 ****************************** ******** ******************** consensus_1885#0 ACTCTCTGTTCTCGAGATTCAGTGTCCTGTTCGCGGACGGCATCTTCAGCTTCGAGGACA 960 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 GGCAGGAGAGCCAGGCCATGTTCTTGCGCAAGGACGCGAGGTGGGCGTTCAAGATCGTGG 1020 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 AGATCGAGCTGGGTTTCGCGTACGATCGGCTCTACACCAAGGCCTCGGTGTCCCGCGGGG 1080 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 CGAGGCTGGCGGTGCGTGTGTGCAGCCTGTCGCTCACGCTCGCCGCCGGCCTCTGGGCGG 1140 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 CGCTGGCGATCCTGCGGGCGAGCCAGTACCGGCAGCGGCACCGGTGCGTGACGTACGCGC 1200 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 TGCTCGCCGGAGCGGCGCTCAACGACGCCGCGATACTCGCCGCCCACGCCTTCTCCGTCT 1260 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 GGTCCCTGGTGCACGGCGACTGGCTGAGCTGGTGCTCCGTCATGCTGGTGAAGCGGAGGA 1320 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 GGTGGTCGGCGAGCATGGCGCAATCCAACCTCGTCACCTTCTGCCTCCGGAAGCTGCCTT 1380 consensus_1885#1 ------------------------------------------------------------ consensus_1885#0 CCAACAACGACTCCGAC 1397 consensus_1885#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||