These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [TTTTTTTTTTTTTTTTTTTCAACAATTGAACACTTTTTATTCATGGAAAACGGGAATGAACCCCAAAACCATTAAACCTTAACTTTTTAAGGGTCAACCCTTTAAAAAATGAAAAGGGCCAACCCAACCCAATTCAATTGGAACTGCAACCCGGACCAAATGGGAAAATCAATTTGGGAATTTAAACAGGCCCCATCCCCATGGTTTGGAAACCACCATTGGTGCAAAAGGGGATTCCCCTATACATACCCTTTGGGACCCAAAACAAAATTTTTAACTTTTCCAAAAAAGGGAAA] [+] EMBL CF282041 [TTTTTTTTTTTTTTTTTTTCAACAATTGAACACTTTTTATTCATGGAAAACGGGAATGAACCCCAAAACCATTAAACCTTAACTTTTTAAGGGTCAACCCTTTAAAAAATGAAAAGGGCCAACCCAACCCAATTCAATTGGAACTGCAACCCGGACCAAATGGGAAAATCAATTTGGGAATTTAAACAGGCCCCATCCCCATGGTTTGGAAACCACCATTGGTGCAAAAGGGGATTCCCCTATACATACCCTTTGGGACCCAAAACAAAATTTTTAACTTTTCCAAAAAAGGGAAA] consensusID : consensus_1889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACAATGGATCATTTTTATTCATGTAAACCGGAAATGACCCCAAAACCATTAAACCTTAACCTTTTTAAGGGTCAACCCTTTAAAAATTTCTACTCCTTCAGCCCAT] [+] EMBL CF327101 [TTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACAATGGATCATTTTTATTCATGTAAACCGGAAATGACCCCAAAACCATTAAACCTTAACCTTTTTAAGGGTCAACCCTTTAAAAATTTCTACTCCTTCAGCCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1889#0 ---------TTTTTTTTTTTTTTTTTTTCAACAATTGAACACTTTTTATTCATGGAAAAC 51 consensus_1889#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACAATGGATCA-TTTTTATTCATGTAAACC 59 ****************** ******* ** ** ************ *** * consensus_1889#0 GGGAATGAACCCCAAAACCATTAAACCTTAAC-TTTTTAAGGGTCAACCCTTTAAAAAAT 110 consensus_1889#1 GGAAATGA-CCCCAAAACCATTAAACCTTAACCTTTTTAAGGGTCAACCCTTTAAAAATT 118 ** ***** *********************** ************************* * consensus_1889#0 GAAAAGGGCCAACCCAACCCAATTCAATTGGAACTGCAACCCGGACCAAATGGGAAAATC 170 consensus_1889#1 TCTA----CTCCTTCAGCCCAT-------------------------------------- 136 * * ** **** consensus_1889#0 AATTTGGGAATTTAAACAGGCCCCATCCCCATGGTTTGGAAACCACCATTGGTGCAAAAG 230 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GGGATTCCCCTATACATACCCTTTGGGACCCAAAACAAAATTTTTAACTTTTCCAAAAAA 290 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GGGAAA 296 consensus_1889#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||