cluster # 1890

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Oryza sativa
cluster # 1890 cluster # 1890 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1890#0 length = 527 sequences # 1

consensus_1890#1 length = 488 sequences # 1

consensusID : consensus_1890#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [CCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCACCGCTTGCCCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTGCCGCTGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGCATCAAAGTGCATGAGCTTGGATCGAGAAGGTCCATGATGTGATCGATGCTAACATCGTCAAGTATTACGCCAACCTGTGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCAGCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATGATGATGATGATGATGATGATGGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCATGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCAATCCGGTGTAGATGAAAATAAAAACAACTGTGTATTTGTACTT]

[+] EMBL CA753649             [CCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCACCGCTTGCCCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTGCCGCTGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGCATCAAAGTGCATGAGCTTGGATCGAGAAGGTCCATGATGTGATCGATGCTAACATCGTCAAGTATTACGCCAACCTGTGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCAGCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATGATGATGATGATGATGATGATGGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCATGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCAATCCGGTGTAGATGAAAATAAAAACAACTGTGTATTTGTACTT]




>consensus_1890#0
CCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCA
CCGCTTGCCCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTGCCGC
TGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGCATCAA
AGTGCATGAGCTTGGATCGAGAAGGTCCATGATGTGATCGATGCTAACATCGTCAAGTAT
TACGCCAACCTGTGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCAGCCATCAGAGG
GATCTGTGGACTCAGCAGGATTTGATGATGATGATGATGATGATGATGGGGGCAGAAGTA
TCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGT
TCAGGAATCGGGAGTTCATCATGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGG
CGCAATCCGGTGTAGATGAAAATAAAAACAACTGTGTATTTGTACTT

consensusID : consensus_1890#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [ATTTGGTTCCTTCATCCTGAATTTTATCCGCTGGTAATAGTTTCCATCCAAAAATTCAAAGAAAAAAAGGAACGATGAATATAGTTGTTCATATGCACGTGCACATGTCCGGATCTTACAGTTTAGATGCCACTAGATTTAGACCAAATGTAAAGGAGAATAGATAGGGATCTTACAGCTTCTAATTGATTTCTTCCCAGCCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATAATGATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCACTGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCATCTGTGTAGATGAAAATAAAACACTGTGTATTTGTACTTATGTACCGCTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGTCAAAAAAAAA]

[+] EMBL BI810831             [ATTTGGTTCCTTCATCCTGAATTTTATCCGCTGGTAATAGTTTCCATCCAAAAATTCAAAGAAAAAAAGGAACGATGAATATAGTTGTTCATATGCACGTGCACATGTCCGGATCTTACAGTTTAGATGCCACTAGATTTAGACCAAATGTAAAGGAGAATAGATAGGGATCTTACAGCTTCTAATTGATTTCTTCCCAGCCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATAATGATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCACTGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCATCTGTGTAGATGAAAATAAAACACTGTGTATTTGTACTTATGTACCGCTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGTCAAAAAAAAA]




>consensus_1890#1
ATTTGGTTCCTTCATCCTGAATTTTATCCGCTGGTAATAGTTTCCATCCAAAAATTCAAA
GAAAAAAAGGAACGATGAATATAGTTGTTCATATGCACGTGCACATGTCCGGATCTTACA
GTTTAGATGCCACTAGATTTAGACCAAATGTAAAGGAGAATAGATAGGGATCTTACAGCT
TCTAATTGATTTCTTCCCAGCCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATAAT
GATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTA
TTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCACTGGTGCCAAGATTT
GGGAGAGTTCTTGTTAGTGTGGAGGCGCATCTGTGTAGATGAAAATAAAACACTGTGTAT
TTGTACTTATGTACCGCTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGTCA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1890#0      CCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCA 60
consensus_1890#1      ------------------------------------------------------------
                                                                                  

consensus_1890#0      CCGCTTGCCCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTGCCGC 120
consensus_1890#1      -----------------------ATTTGGTTCCTTCATCCTGAATTTTATCCGCTGGTAA 37
                                               * *    *  ** *    **      *  **    

consensus_1890#0      TGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGCATCAA 180
consensus_1890#1      TAGTTTCCATCCAAA----AATTCAAA--GAAAAAAAGGAACGATGAATATAGTTGTTCA 91
                      *   **  * *  *       ****    *   ***   * * ***   *      *  *

consensus_1890#0      AGTGCATGAGCTTGGATCGAGAAGGTCCATGATGTGATCGATGCTAACATCG--TCAAGT 238
consensus_1890#1      TATGCACGTGCACATGTCCGGAT--CTTACAGTTTAGATGCCACTAGATTTAGACCAAAT 149
                        **** * **     **  **      *   * *    *   ***   *     *** *

consensus_1890#0      ATTACGCCAACCTG-TGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCAGCC-ATCA 296
consensus_1890#1      GTAAAGGAGAATAGATAGGGATCTTACAGCT--TCTAATTGATTTCTTCCCAGCCCATCA 207
                       * * *   *   * * *      * ****   * * * *   ** *   ***** ****

consensus_1890#0      GAGGGATCTGTGGACTCAGCAGGATTTGATGATGATGATGATGATGATGATGGGGGCAGA 356
consensus_1890#1      GAGGGATCTGTGGACTCAGCAGGATTTGATAATGATGATGATGATG-------GGGCAGA 260
                      ****************************** ***************       *******

consensus_1890#0      AGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCAT 416
consensus_1890#1      AGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCAT 320
                      ************************************************************

consensus_1890#0      TGGTTCAGGAATCGGGAGTTCATCA-TGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGT 475
consensus_1890#1      TGGTTCAGGAATCGGGAGTTCATCACTGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGT 380
                      ************************* **********************************

consensus_1890#0      GGAGGCGCAATCCGGTGTAGATGAAAATAAAAACAACTGTGTATTTGTACTT-------- 527
consensus_1890#1      GGAGGCGCA--TCTGTGTAGATGAAAATAAAAC--ACTGTGTATTTGTACTTATGTACCG 436
                      *********   * ******************   *****************        

consensus_1890#0      ----------------------------------------------------
consensus_1890#1      CTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGTCAAAAAAAAA 488